Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 202 |
| AccII | CGCG | 1 cut(s) | 404 |
| AcsI | RAATTY | 1 cut(s) | 398 |
| AcuI | CTGAAG | 1 cut(s) | 392 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AgsI | TTSAA | 2 cut(s) | 128, 346 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 383, 415 |
| AluBI | AGCT | 7 cut(s) | 52, 123, 310, 327, 332, 370, 489 |
| AluI | AGCT | 7 cut(s) | 52, 123, 310, 327, 332, 370, 489 |
| Alw21I | GWGCWC | 1 cut(s) | 329 |
| Alw26I | GTCTC | 1 cut(s) | 137 |
| AoxI | GGCC | 3 cut(s) | 43, 235, 381 |
| ApeKI | GCWGC | 4 cut(s) | 78, 120, 206, 486 |
| ApoI | RAATTY | 1 cut(s) | 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 132 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuC2I | CCSGG | 1 cut(s) | 266 |
| AsuHPI | GGTGA | 1 cut(s) | 379 |
| BanII | GRGCYC | 1 cut(s) | 329 |
| Bbv12I | GWGCWC | 1 cut(s) | 329 |
| BbvI | GCAGC | 3 cut(s) | 90, 132, 193 |
| BccI | CCATC | 1 cut(s) | 460 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BclI | TGATCA | 2 cut(s) | 84, 105 |
| BcnI | CCSGG | 1 cut(s) | 266 |
| BcoDI | GTCTC | 1 cut(s) | 137 |
| BfaI | CTAG | 2 cut(s) | 47, 153 |
| BisI | GCNGC | 4 cut(s) | 79, 121, 207, 487 |
| BlpI | GCTNAGC | 1 cut(s) | 328 |
| BlsI | GCNGC | 4 cut(s) | 80, 122, 208, 488 |
| Bme1390I | CCNGG | 2 cut(s) | 249, 266 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 360 |
| BmrFI | CCNGG | 2 cut(s) | 249, 266 |
| BmsI | GCATC | 3 cut(s) | 139, 173, 409 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 316, 348 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 328 |
| BpuMI | CCSGG | 1 cut(s) | 266 |
| BsaJI | CCNNGG | 1 cut(s) | 184 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 1 cut(s) | 319 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseDI | CCNNGG | 1 cut(s) | 184 |
| BseGI | GGATG | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseMII | CTCAG | 1 cut(s) | 342 |
| BseNI | ACTGG | 1 cut(s) | 319 |
| BseRI | GAGGAG | 2 cut(s) | 296, 299 |
| BseXI | GCAGC | 3 cut(s) | 90, 132, 193 |
| Bsh1236I | CGCG | 1 cut(s) | 404 |
| BshFI | GGCC | 3 cut(s) | 45, 237, 383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 329 |
| BsiSI | CCGG | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmAI | GTCTC | 1 cut(s) | 137 |
| BsmBI | CGTCTC | 1 cut(s) | 137 |
| BsmI | GAATGC | 1 cut(s) | 166 |
| BsnI | GGCC | 3 cut(s) | 45, 237, 383 |
| Bsp1286I | GDGCHC | 1 cut(s) | 329 |
| Bsp143I | GATC | 2 cut(s) | 84, 105 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 328 |
| Bsp68I | TCGCGA | 1 cut(s) | 404 |
| BspANI | GGCC | 3 cut(s) | 45, 237, 383 |
| BspCNI | CTCAG | 1 cut(s) | 341 |
| BspFNI | CGCG | 1 cut(s) | 404 |
| BspLI | GGNNCC | 1 cut(s) | 360 |
| BspQI | GCTCTTC | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 319 |
| BssECI | CCNNGG | 1 cut(s) | 184 |
| BssMI | GATC | 2 cut(s) | 84, 105 |
| BssT1I | CCWWGG | 1 cut(s) | 184 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| Bst6I | CTCTTC | 3 cut(s) | 249, 273, 317 |
| BstDEI | CTNAG | 2 cut(s) | 328, 354 |
| BstF5I | GGATG | 1 cut(s) | 154 |
| BstFNI | CGCG | 1 cut(s) | 404 |
| BstKTI | GATC | 2 cut(s) | 87, 108 |
| BstMAI | GTCTC | 1 cut(s) | 137 |
| BstMBI | GATC | 2 cut(s) | 84, 105 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 428 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstSCI | CCNGG | 2 cut(s) | 247, 264 |
| BstUI | CGCG | 1 cut(s) | 404 |
| BstV1I | GCAGC | 3 cut(s) | 90, 132, 193 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 466 |
| BsuRI | GGCC | 3 cut(s) | 45, 237, 383 |
| BtsCI | GGATG | 1 cut(s) | 154 |
| BtuMI | TCGCGA | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| CviAII | CATG | 2 cut(s) | 74, 434 |
| DdeI | CTNAG | 2 cut(s) | 328, 354 |
| DpnI | GATC | 2 cut(s) | 86, 107 |
| DpnII | GATC | 2 cut(s) | 84, 105 |
| Eam1104I | CTCTTC | 3 cut(s) | 249, 273, 317 |
| EarI | CTCTTC | 3 cut(s) | 249, 273, 317 |
| Ecl136II | GAGCTC | 1 cut(s) | 327 |
| Eco130I | CCWWGG | 1 cut(s) | 184 |
| Eco24I | GRGCYC | 1 cut(s) | 329 |
| Eco53kI | GAGCTC | 1 cut(s) | 327 |
| Eco57I | CTGAAG | 1 cut(s) | 392 |
| EcoICRI | GAGCTC | 1 cut(s) | 327 |
| EcoO109I | RGGNCCY | 1 cut(s) | 43 |
| EcoRI | GAATTC | 1 cut(s) | 398 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 184 |
| EcoT22I | ATGCAT | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 1 cut(s) | 329 |
| ErhI | CCWWGG | 1 cut(s) | 184 |
| Esp3I | CGTCTC | 1 cut(s) | 137 |
| FaeI | CATG | 2 cut(s) | 77, 437 |
| FatI | CATG | 2 cut(s) | 73, 433 |
| FauNDI | CATATG | 1 cut(s) | 178 |
| FbaI | TGATCA | 2 cut(s) | 84, 105 |
| Fnu4HI | GCNGC | 4 cut(s) | 79, 121, 207, 487 |
| FokI | GGATG | 1 cut(s) | 161 |
| FriOI | GRGCYC | 1 cut(s) | 329 |
| Fsp4HI | GCNGC | 4 cut(s) | 79, 121, 207, 487 |
| FspBI | CTAG | 2 cut(s) | 47, 153 |
| GluI | GCNGC | 4 cut(s) | 79, 121, 207, 487 |
| HaeIII | GGCC | 3 cut(s) | 45, 237, 383 |
| HapII | CCGG | 1 cut(s) | 266 |
| Hin1II | CATG | 2 cut(s) | 77, 437 |
| HincII | GTYRAC | 1 cut(s) | 351 |
| HindII | GTYRAC | 1 cut(s) | 351 |
| HpaII | CCGG | 1 cut(s) | 266 |
| HphI | GGTGA | 1 cut(s) | 379 |
| Hpy166II | GTNNAC | 1 cut(s) | 351 |
| Hpy188III | TCNNGA | 1 cut(s) | 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 351 |
| HpyAV | CCTTC | 4 cut(s) | 143, 312, 313, 394 |
| HpyCH4V | TGCA | 1 cut(s) | 164 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 428 |
| HpyF3I | CTNAG | 2 cut(s) | 328, 354 |
| Hsp92II | CATG | 2 cut(s) | 77, 437 |
| Ksp22I | TGATCA | 2 cut(s) | 84, 105 |
| Kzo9I | GATC | 2 cut(s) | 84, 105 |
| LguI | GCTCTTC | 1 cut(s) | 317 |
| LpnPI | CCDG | 6 cut(s) | 24, 234, 261, 279, 300, 408 |
| Lsp1109I | GCAGC | 3 cut(s) | 90, 132, 193 |
| LweI | GCATC | 3 cut(s) | 139, 173, 409 |
| MaeI | CTAG | 2 cut(s) | 47, 153 |
| MalI | GATC | 2 cut(s) | 86, 107 |
| MboI | GATC | 2 cut(s) | 84, 105 |
| MboII | GAAGA | 6 cut(s) | 169, 266, 284, 290, 291, 334 |
| MfeI | CAATTG | 1 cut(s) | 341 |
| MhlI | GDGCHC | 1 cut(s) | 329 |
| MluCI | AATT | 3 cut(s) | 20, 341, 398 |
| MmeI | TCCRAC | 1 cut(s) | 12 |
| MnlI | CCTC | 5 cut(s) | 106, 250, 262, 274, 277 |
| Mph1103I | ATGCAT | 1 cut(s) | 166 |
| MroXI | GAANNNNTTC | 1 cut(s) | 132 |
| MseI | TTAA | 1 cut(s) | 27 |
| MslI | CAYNNNNRTG | 1 cut(s) | 464 |
| MspA1I | CMGCKG | 1 cut(s) | 489 |
| MspI | CCGG | 1 cut(s) | 266 |
| MspR9I | CCNGG | 2 cut(s) | 249, 266 |
| MunI | CAATTG | 1 cut(s) | 341 |
| Mva1269I | GAATGC | 1 cut(s) | 166 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 428 |
| NciI | CCSGG | 1 cut(s) | 266 |
| NdeI | CATATG | 1 cut(s) | 178 |
| NdeII | GATC | 2 cut(s) | 84, 105 |
| NlaIII | CATG | 2 cut(s) | 77, 437 |
| NlaIV | GGNNCC | 1 cut(s) | 360 |
| NruI | TCGCGA | 1 cut(s) | 404 |
| NsiI | ATGCAT | 1 cut(s) | 166 |
| PciSI | GCTCTTC | 1 cut(s) | 317 |
| PctI | GAATGC | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 132 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 202 |
| PfoI | TCCNGGA | 2 cut(s) | 247, 264 |
| PkrI | GCNGC | 4 cut(s) | 80, 122, 208, 488 |
| Psp124BI | GAGCTC | 1 cut(s) | 329 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PvuII | CAGCTG | 1 cut(s) | 489 |
| RruI | TCGCGA | 1 cut(s) | 404 |
| RseI | CAYNNNNRTG | 1 cut(s) | 464 |
| SacI | GAGCTC | 1 cut(s) | 329 |
| SapI | GCTCTTC | 1 cut(s) | 317 |
| SaqAI | TTAA | 1 cut(s) | 27 |
| SatI | GCNGC | 4 cut(s) | 79, 121, 207, 487 |
| Sau3AI | GATC | 2 cut(s) | 84, 105 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 2 cut(s) | 249, 266 |
| SduI | GDGCHC | 1 cut(s) | 329 |
| SfaNI | GCATC | 3 cut(s) | 139, 173, 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 464 |
| Sse9I | AATT | 3 cut(s) | 20, 341, 398 |
| SspI | AATATT | 1 cut(s) | 441 |
| SspMI | CTAG | 2 cut(s) | 47, 153 |
| SstI | GAGCTC | 1 cut(s) | 329 |
| StyD4I | CCNGG | 2 cut(s) | 247, 264 |
| StyI | CCWWGG | 1 cut(s) | 184 |
| TaqI | TCGA | 1 cut(s) | 306 |
| TasI | AATT | 3 cut(s) | 20, 341, 398 |
| Tru1I | TTAA | 1 cut(s) | 27 |
| Tru9I | TTAA | 1 cut(s) | 27 |
| TseI | GCWGC | 4 cut(s) | 78, 120, 206, 486 |
| TspDTI | ATGAA | 2 cut(s) | 291, 450 |
| TspGWI | ACGGA | 2 cut(s) | 125, 161 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 202 |
| XapI | RAATTY | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 132 |
| XspI | CTAG | 2 cut(s) | 47, 153 |
| Zsp2I | ATGCAT | 1 cut(s) | 166 |