Rroxscaffold_2G00136720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000057
Physical Location & Seq
Forward (+)
74391153 .. 74392311
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136720.1

Sequence Viewer

Length: 720 bp
ATGGCGATTTTTGTACCAGCTACGATCATCGCGTCAACGAGAAAACAAATCAAGCATCCGACGACCGGCGGAAAAGACAAGAATGCATCATCGTTTATTCGAGAGGGCGGGGGTTTGAAGATCTCCGAGAGGACCATCCCGGACCCTACCATAGCGGTCCAATATGACAACGATGGGTATGAGTGCATATTCGACGAGTCTACGGAGGCCCGAGAGGGACCGAGGTGCCCGGAAGTCCGTCAAAAGTCAACGCGGCCATACAAGGTCGGACGAAGCGGCGGCTCCACATCACGGACACTAGCCCAACCTAAGCCTCGCAATGGAGAAATTGTTCGGGAAACTTTCGGAACCATTGAGCTCGAAGTAGATTTGGCTTCACTCATTCAGATGGCTCAACAACCGACCAAGTCCTCTATCACGTACCTACAACGTTTCCGGATCCGTAAAGGGAAGCCGAATGTGGTCCCGCCAAAGAAGGAATTTGTGAAGTTGGCAATCAAGGGTTTGGAACCCCGCCGAGCAAAAAAACAGACACGGTTGTATGTTCAACTCCATGGGAGACCTAATCACGAAGTAGGAAGCTACGAGCACCTGCTCGGAGAGATGGATGACATAAAGAATGCCTTTAAGGGAACATATATTCTAGGAAAGCGTAGGACGATGAGCTGCTCGAAACATTACTCGAGTTCCCATGATCCTTATTACAGACCGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.98

Weight (kDa)

9.92

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 200
AccII CGCG 2 cut(s) 32, 253
AccIII TCCGGA 1 cut(s) 435
AciI CCGC 8 cut(s) 69, 108, 155, 253, 276, 279, 467, 514
AclI AACGTT 1 cut(s) 430
AclWI GGATC 3 cut(s) 433, 446, 689
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 2 cut(s) 15, 422
AfiI CCNNNNNNNGG 3 cut(s) 65, 291, 320
AgsI TTSAA 2 cut(s) 118, 548
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 5 cut(s) 20, 358, 582, 666, 717
AluI AGCT 5 cut(s) 20, 358, 582, 666, 717
Alw21I GWGCWC 2 cut(s) 360, 591
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 3 cut(s) 433, 446, 689
Ama87I CYCGRG 2 cut(s) 210, 682
Aor13HI TCCGGA 1 cut(s) 435
AoxI GGCC 2 cut(s) 207, 254
ApeKI GCWGC 1 cut(s) 666
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 6 cut(s) 132, 142, 157, 208, 218, 463
AsuC2I CCSGG 2 cut(s) 140, 230
AvaI CYCGRG 2 cut(s) 210, 682
AvaII GGWCC 5 cut(s) 132, 142, 157, 218, 463
BaeGI GKGCMC 1 cut(s) 230
BamHI GGATCC 1 cut(s) 438
BanI GGYRCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 360, 591
BbvI GCAGC 1 cut(s) 653
BccI CCATC 4 cut(s) 143, 167, 382, 598
BcnI CCSGG 2 cut(s) 140, 230
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 3 cut(s) 299, 644, 718
BfuAI ACCTGC 1 cut(s) 600
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 254, 277, 280, 667
BlsI GCNGC 4 cut(s) 255, 278, 281, 668
Bme1390I CCNGG 2 cut(s) 140, 230
Bme18I GGWCC 5 cut(s) 132, 142, 157, 218, 463
BmeT110I CYCGRG 2 cut(s) 210, 682
BmgT120I GGNCC 6 cut(s) 132, 142, 157, 208, 218, 463
BmiI GGNNCC 8 cut(s) 144, 219, 227, 283, 349, 440, 465, 510
BmrFI CCNGG 2 cut(s) 140, 230
BmsI GCATC 2 cut(s) 64, 95
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 2 cut(s) 140, 230
BsaAI YACGTR 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 221, 553, 710
BsaWI WCCGGW 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 291, 320
Bse118I RCCGGY 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 325
BseAI TCCGGA 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 221, 553, 710
BseGI GGATG 3 cut(s) 55, 135, 613
BseLI CCNNNNNNNGG 3 cut(s) 65, 291, 320
BseMI GCAATG 1 cut(s) 325
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 653
Bsh1236I CGCG 2 cut(s) 32, 253
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 209, 256
BshNI GGYRCC 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 360, 591
BsiHKCI CYCGRG 2 cut(s) 210, 682
BsiSI CCGG 4 cut(s) 66, 140, 230, 436
BslFI GGGAC 2 cut(s) 231, 449
BslI CCNNNNNNNGG 3 cut(s) 65, 291, 320
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 2 cut(s) 231, 449
BsmI GAATGC 2 cut(s) 88, 625
BsnI GGCC 2 cut(s) 209, 256
Bso31I GGTCTC 1 cut(s) 553
BsoBI CYCGRG 2 cut(s) 210, 682
Bsp1286I GDGCHC 3 cut(s) 230, 360, 591
Bsp13I TCCGGA 1 cut(s) 435
Bsp143I GATC 4 cut(s) 24, 120, 438, 694
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 8 cut(s) 69, 108, 155, 253, 276, 279, 467, 514
BspANI GGCC 2 cut(s) 209, 256
BspEI TCCGGA 1 cut(s) 435
BspFNI CGCG 2 cut(s) 32, 253
BspLI GGNNCC 8 cut(s) 144, 219, 227, 283, 349, 440, 465, 510
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 3 cut(s) 433, 446, 689
BspT107I GGYRCC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 221, 553, 710
BssMI GATC 4 cut(s) 24, 120, 438, 694
BssT1I CCWWGG 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 537
BstBAI YACGTR 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 3 cut(s) 55, 135, 613
BstFNI CGCG 2 cut(s) 32, 253
BstKTI GATC 4 cut(s) 27, 123, 441, 697
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 4 cut(s) 24, 120, 438, 694
BstMCI CGRYCG 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 138, 228
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 2 cut(s) 32, 253
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 2 cut(s) 120, 438
BstYI RGATCY 2 cut(s) 120, 438
BsuRI GGCC 2 cut(s) 209, 256
BtgI CCRYGG 1 cut(s) 553
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 55, 135, 613
BveI ACCTGC 1 cut(s) 600
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 6 cut(s) 132, 142, 157, 208, 218, 463
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 14, 421
CviAII CATG 2 cut(s) 554, 692
CviQI GTAC 2 cut(s) 14, 421
DdeI CTNAG 1 cut(s) 309
DpnI GATC 4 cut(s) 26, 122, 440, 696
DpnII GATC 4 cut(s) 24, 120, 438, 694
EaeI YGGCCR 1 cut(s) 254
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 5 cut(s) 132, 142, 157, 218, 463
Eco53kI GAGCTC 1 cut(s) 358
Eco88I CYCGRG 2 cut(s) 210, 682
EcoICRI GAGCTC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 553
EcoT22I ATGCAT 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 2 cut(s) 557, 695
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 2 cut(s) 231, 449
FatI CATG 2 cut(s) 553, 691
FauI CCCGC 3 cut(s) 101, 474, 521
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 4 cut(s) 254, 277, 280, 667
FokI GGATG 3 cut(s) 42, 122, 620
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 4 cut(s) 254, 277, 280, 667
FspBI CTAG 3 cut(s) 299, 644, 718
GluI GCNGC 4 cut(s) 254, 277, 280, 667
HaeIII GGCC 2 cut(s) 209, 256
HapII CCGG 4 cut(s) 66, 140, 230, 436
HgaI GACGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 557, 695
HincII GTYRAC 2 cut(s) 36, 249
HindII GTYRAC 2 cut(s) 36, 249
HinfI GANTC 1 cut(s) 197
HpaII CCGG 4 cut(s) 66, 140, 230, 436
Hpy166II GTNNAC 3 cut(s) 36, 201, 249
Hpy188I TCNGA 6 cut(s) 60, 127, 269, 347, 387, 599
Hpy188III TCNNGA 4 cut(s) 101, 335, 436, 569
Hpy8I GTNNAC 3 cut(s) 36, 201, 249
Hpy99I CGWCG 2 cut(s) 64, 197
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 2 cut(s) 419, 430
HpyCH4V TGCA 2 cut(s) 86, 186
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 419, 430
Hsp92II CATG 2 cut(s) 557, 695
Kpn2I TCCGGA 1 cut(s) 435
Kzo9I GATC 4 cut(s) 24, 120, 438, 694
LmnI GCTCC 2 cut(s) 287, 714
LpnPI CCDG 6 cut(s) 30, 79, 153, 243, 449, 605
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 2 cut(s) 64, 95
MaeI CTAG 3 cut(s) 299, 644, 718
MaeII ACGT 2 cut(s) 419, 430
MalI GATC 4 cut(s) 26, 122, 440, 696
MboI GATC 4 cut(s) 24, 120, 438, 694
MboII GAAGA 1 cut(s) 130
MflI RGATCY 2 cut(s) 120, 438
MhlI GDGCHC 3 cut(s) 230, 360, 591
MluCI AATT 2 cut(s) 327, 479
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 83, 247
MnlI CCTC 8 cut(s) 97, 123, 199, 208, 216, 324, 421, 705
Mph1103I ATGCAT 1 cut(s) 88
MroI TCCGGA 1 cut(s) 435
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 4 cut(s) 66, 140, 230, 436
MspR9I CCNGG 2 cut(s) 140, 230
Mva1269I GAATGC 2 cut(s) 88, 625
MvnI CGCG 2 cut(s) 32, 253
NciI CCSGG 2 cut(s) 140, 230
NcoI CCATGG 1 cut(s) 553
NdeII GATC 4 cut(s) 24, 120, 438, 694
NlaIII CATG 2 cut(s) 557, 695
NlaIV GGNNCC 8 cut(s) 144, 219, 227, 283, 349, 440, 465, 510
NmeAIII GCCGAG 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 682
PaqCI CACCTGC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 2 cut(s) 88, 625
PdmI GAANNNNTTC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 406
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 4 cut(s) 255, 278, 281, 668
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 360
Psp1406I AACGTT 1 cut(s) 430
PspN4I GGNNCC 8 cut(s) 144, 219, 227, 283, 349, 440, 465, 510
PspPI GGNCC 6 cut(s) 132, 142, 157, 208, 218, 463
PspXI VCTCGAGB 1 cut(s) 682
PsuI RGATCY 2 cut(s) 120, 438
PsyI GACNNNGTC 1 cut(s) 406
RsaI GTAC 2 cut(s) 15, 422
RsaNI GTAC 2 cut(s) 14, 421
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 4 cut(s) 254, 277, 280, 667
Sau3AI GATC 4 cut(s) 24, 120, 438, 694
Sau96I GGNCC 6 cut(s) 132, 142, 157, 208, 218, 463
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 140, 230
SduI GDGCHC 3 cut(s) 230, 360, 591
SfaNI GCATC 2 cut(s) 64, 95
Sfr274I CTCGAG 1 cut(s) 682
SinI GGWCC 5 cut(s) 132, 142, 157, 218, 463
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 2 cut(s) 327, 479
SsiI CCGC 8 cut(s) 69, 108, 155, 253, 276, 279, 467, 514
SspMI CTAG 3 cut(s) 299, 644, 718
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 138, 228
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 2 cut(s) 422, 433
TaqI TCGA 5 cut(s) 100, 192, 360, 671, 683
TaqII GACCGA 1 cut(s) 235
TasI AATT 2 cut(s) 327, 479
TauI GCSGC 3 cut(s) 256, 279, 282
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TseI GCWGC 1 cut(s) 666
TspGWI ACGGA 4 cut(s) 218, 227, 307, 431
Tth111I GACNNNGTC 1 cut(s) 406
VpaK11BI GGWCC 5 cut(s) 132, 142, 157, 218, 463
XapI RAATTY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 3 cut(s) 299, 644, 718
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.