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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 268 |
| AccBSI | CCGCTC | 1 cut(s) | 779 |
| AccII | CGCG | 2 cut(s) | 231, 573 |
| AciI | CCGC | 9 cut(s) | 75, 229, 260, 330, 371, 390, 412, 699, 779 |
| AclI | AACGTT | 1 cut(s) | 591 |
| AclWI | GGATC | 3 cut(s) | 139, 381, 497 |
| AcuI | CTGAAG | 2 cut(s) | 459, 723 |
| AfaI | GTAC | 1 cut(s) | 764 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 475 |
| AgsI | TTSAA | 3 cut(s) | 304, 361, 466 |
| AjnI | CCWGG | 2 cut(s) | 269, 658 |
| AleI | CACNNNNGTG | 1 cut(s) | 68 |
| AluBI | AGCT | 1 cut(s) | 314 |
| AluI | AGCT | 1 cut(s) | 314 |
| Alw26I | GTCTC | 1 cut(s) | 128 |
| AlwI | GGATC | 3 cut(s) | 139, 381, 497 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 734, 746 |
| AoxI | GGCC | 4 cut(s) | 43, 423, 579, 645 |
| ApeKI | GCWGC | 5 cut(s) | 241, 274, 326, 617, 663 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 328, 360 |
| AspLEI | GCGC | 2 cut(s) | 310, 573 |
| AspS9I | GGNCC | 2 cut(s) | 43, 423 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 2 cut(s) | 89, 520 |
| AsuII | TTCGAA | 1 cut(s) | 101 |
| BaeGI | GKGCMC | 1 cut(s) | 561 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BauI | CACGAG | 1 cut(s) | 718 |
| BbvI | GCAGC | 5 cut(s) | 253, 286, 313, 604, 675 |
| BccI | CCATC | 4 cut(s) | 175, 329, 413, 634 |
| BceAI | ACGGC | 1 cut(s) | 520 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 122, 156 |
| BciT130I | CCWGG | 2 cut(s) | 271, 660 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 1 cut(s) | 128 |
| BfaI | CTAG | 1 cut(s) | 540 |
| BfmI | CTRYAG | 1 cut(s) | 66 |
| BfuAI | ACCTGC | 1 cut(s) | 268 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 305, 431 |
| BglII | AGATCT | 2 cut(s) | 190, 406 |
| BisI | GCNGC | 6 cut(s) | 242, 275, 327, 330, 618, 664 |
| BlsI | GCNGC | 6 cut(s) | 243, 276, 328, 331, 619, 665 |
| Bme1390I | CCNGG | 3 cut(s) | 113, 271, 660 |
| BmgT120I | GGNCC | 2 cut(s) | 43, 423 |
| BmiI | GGNNCC | 2 cut(s) | 224, 424 |
| BmrFI | CCNGG | 3 cut(s) | 113, 271, 660 |
| BmsI | GCATC | 2 cut(s) | 175, 401 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 11, 43 |
| Bpu14I | TTCGAA | 1 cut(s) | 101 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaBI | GATNNNNATC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 2 cut(s) | 517, 648 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 768 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 475 |
| Bse8I | GATNNNNATC | 1 cut(s) | 189 |
| BseBI | CCWGG | 2 cut(s) | 271, 660 |
| BseDI | CCNNGG | 2 cut(s) | 517, 648 |
| BseGI | GGATG | 2 cut(s) | 190, 424 |
| BseJI | GATNNNNATC | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 475 |
| BseMII | CTCAG | 2 cut(s) | 26, 30 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseSI | GKGCMC | 1 cut(s) | 561 |
| BseXI | GCAGC | 5 cut(s) | 253, 286, 313, 604, 675 |
| BseYI | CCCAGC | 1 cut(s) | 531 |
| Bsh1236I | CGCG | 2 cut(s) | 231, 573 |
| BshFI | GGCC | 4 cut(s) | 45, 425, 581, 647 |
| BsiSI | CCGG | 1 cut(s) | 113 |
| BslFI | GGGAC | 1 cut(s) | 745 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 475 |
| BsmAI | GTCTC | 1 cut(s) | 128 |
| BsmFI | GGGAC | 1 cut(s) | 745 |
| BsmI | GAATGC | 1 cut(s) | 367 |
| BsnI | GGCC | 4 cut(s) | 45, 425, 581, 647 |
| Bsp119I | TTCGAA | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 2 cut(s) | 53, 561 |
| Bsp143I | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| BspACI | CCGC | 9 cut(s) | 75, 229, 260, 330, 371, 390, 412, 699, 779 |
| BspANI | GGCC | 4 cut(s) | 45, 425, 581, 647 |
| BspCNI | CTCAG | 2 cut(s) | 25, 31 |
| BspFNI | CGCG | 2 cut(s) | 231, 573 |
| BspLI | GGNNCC | 2 cut(s) | 224, 424 |
| BspMI | ACCTGC | 1 cut(s) | 268 |
| BspPI | GGATC | 3 cut(s) | 139, 381, 497 |
| BspT104I | TTCGAA | 1 cut(s) | 101 |
| BsrBI | CCGCTC | 1 cut(s) | 779 |
| BssECI | CCNNGG | 2 cut(s) | 517, 648 |
| BssMI | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| BssSI | CACGAG | 1 cut(s) | 718 |
| BssT1I | CCWWGG | 2 cut(s) | 517, 648 |
| Bst2BI | CACGAG | 1 cut(s) | 718 |
| Bst2UI | CCWGG | 2 cut(s) | 271, 660 |
| Bst4CI | ACNGT | 2 cut(s) | 58, 613 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 734 |
| BstBI | TTCGAA | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 645 |
| BstDEI | CTNAG | 2 cut(s) | 12, 39 |
| BstF5I | GGATG | 2 cut(s) | 190, 424 |
| BstFNI | CGCG | 2 cut(s) | 231, 573 |
| BstHHI | GCGC | 2 cut(s) | 310, 573 |
| BstKTI | GATC | 5 cut(s) | 147, 193, 376, 409, 505 |
| BstMAI | GTCTC | 1 cut(s) | 128 |
| BstMBI | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 194, 283, 305, 431, 614, 734 |
| BstNI | CCWGG | 2 cut(s) | 271, 660 |
| BstSCI | CCNGG | 3 cut(s) | 111, 269, 658 |
| BstSFI | CTRYAG | 1 cut(s) | 66 |
| BstSLI | GKGCMC | 1 cut(s) | 561 |
| BstUI | CGCG | 2 cut(s) | 231, 573 |
| BstV1I | GCAGC | 5 cut(s) | 253, 286, 313, 604, 675 |
| BstX2I | RGATCY | 2 cut(s) | 190, 406 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 593 |
| BstYI | RGATCY | 2 cut(s) | 190, 406 |
| BsuRI | GGCC | 4 cut(s) | 45, 425, 581, 647 |
| BtgZI | GCGATG | 2 cut(s) | 155, 307 |
| BtsCI | GGATG | 2 cut(s) | 190, 424 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| BveI | ACCTGC | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 645 |
| CaiI | CAGNNNCTG | 2 cut(s) | 734, 746 |
| CfoI | GCGC | 2 cut(s) | 310, 573 |
| Cfr13I | GGNCC | 2 cut(s) | 43, 423 |
| CseI | GACGC | 1 cut(s) | 332 |
| Csp6I | GTAC | 1 cut(s) | 763 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 423, 458 |
| CviAII | CATG | 1 cut(s) | 470 |
| CviQI | GTAC | 1 cut(s) | 763 |
| DdeI | CTNAG | 2 cut(s) | 12, 39 |
| DpnI | GATC | 5 cut(s) | 146, 192, 375, 408, 504 |
| DpnII | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 2 cut(s) | 517, 648 |
| Eco147I | AGGCCT | 1 cut(s) | 647 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 2 cut(s) | 459, 723 |
| EcoRII | CCWGG | 2 cut(s) | 269, 658 |
| EcoT14I | CCWWGG | 2 cut(s) | 517, 648 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| ErhI | CCWWGG | 2 cut(s) | 517, 648 |
| FaeI | CATG | 1 cut(s) | 473 |
| FaqI | GGGAC | 1 cut(s) | 745 |
| FatI | CATG | 1 cut(s) | 469 |
| Fnu4HI | GCNGC | 6 cut(s) | 242, 275, 327, 330, 618, 664 |
| FokI | GGATG | 2 cut(s) | 197, 431 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| Fsp4HI | GCNGC | 6 cut(s) | 242, 275, 327, 330, 618, 664 |
| FspBI | CTAG | 1 cut(s) | 540 |
| GlaI | GCGC | 2 cut(s) | 309, 572 |
| GluI | GCNGC | 6 cut(s) | 242, 275, 327, 330, 618, 664 |
| GsaI | CCCAGC | 1 cut(s) | 535 |
| HaeIII | GGCC | 4 cut(s) | 45, 425, 581, 647 |
| HapII | CCGG | 1 cut(s) | 113 |
| HgaI | GACGC | 1 cut(s) | 332 |
| HhaI | GCGC | 2 cut(s) | 310, 573 |
| Hin1II | CATG | 1 cut(s) | 473 |
| Hin6I | GCGC | 2 cut(s) | 308, 571 |
| HinP1I | GCGC | 2 cut(s) | 308, 571 |
| HincII | GTYRAC | 2 cut(s) | 6, 61 |
| HindII | GTYRAC | 2 cut(s) | 6, 61 |
| HinfI | GANTC | 3 cut(s) | 22, 166, 250 |
| HpaII | CCGG | 1 cut(s) | 113 |
| HphI | GGTGA | 2 cut(s) | 89, 520 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 61, 692 |
| Hpy188I | TCNGA | 3 cut(s) | 15, 217, 742 |
| Hpy188III | TCNNGA | 3 cut(s) | 163, 358, 718 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 61, 692 |
| Hpy99I | CGWCG | 2 cut(s) | 607, 776 |
| HpyAV | CCTTC | 3 cut(s) | 110, 298, 469 |
| HpyCH4III | ACNGT | 2 cut(s) | 58, 613 |
| HpyCH4IV | ACGT | 1 cut(s) | 591 |
| HpyCH4V | TGCA | 3 cut(s) | 188, 451, 487 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 194, 283, 305, 431, 614, 734 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 39 |
| HpySE526I | ACGT | 1 cut(s) | 591 |
| Hsp92II | CATG | 1 cut(s) | 473 |
| HspAI | GCGC | 2 cut(s) | 308, 571 |
| Kzo9I | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| LmnI | GCTCC | 5 cut(s) | 119, 228, 640, 725, 776 |
| Lsp1109I | GCAGC | 5 cut(s) | 253, 286, 313, 604, 675 |
| LweI | GCATC | 2 cut(s) | 175, 401 |
| MaeI | CTAG | 1 cut(s) | 540 |
| MaeII | ACGT | 1 cut(s) | 591 |
| MaeIII | GTNAC | 4 cut(s) | 280, 344, 715, 748 |
| MalI | GATC | 5 cut(s) | 146, 192, 375, 408, 504 |
| MbiI | CCGCTC | 1 cut(s) | 779 |
| MboI | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| MboII | GAAGA | 3 cut(s) | 98, 190, 591 |
| MfeI | CAATTG | 1 cut(s) | 138 |
| MflI | RGATCY | 2 cut(s) | 190, 406 |
| MhlI | GDGCHC | 2 cut(s) | 53, 561 |
| MluCI | AATT | 2 cut(s) | 138, 461 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MnlI | CCTC | 7 cut(s) | 34, 43, 76, 82, 236, 472, 714 |
| MslI | CAYNNNNRTG | 1 cut(s) | 68 |
| MspI | CCGG | 1 cut(s) | 113 |
| MspR9I | CCNGG | 3 cut(s) | 113, 271, 660 |
| MunI | CAATTG | 1 cut(s) | 138 |
| Mva1269I | GAATGC | 1 cut(s) | 367 |
| MvaI | CCWGG | 2 cut(s) | 271, 660 |
| MvnI | CGCG | 2 cut(s) | 231, 573 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 194, 283, 305, 431, 614, 734 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NdeII | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| NlaIII | CATG | 1 cut(s) | 473 |
| NlaIV | GGNNCC | 2 cut(s) | 224, 424 |
| NmeAIII | GCCGAG | 1 cut(s) | 470 |
| NmuCI | GTSAC | 4 cut(s) | 280, 344, 715, 748 |
| NspV | TTCGAA | 1 cut(s) | 101 |
| OliI | CACNNNNGTG | 1 cut(s) | 68 |
| PceI | AGGCCT | 1 cut(s) | 647 |
| PctI | GAATGC | 1 cut(s) | 367 |
| PfeI | GAWTC | 2 cut(s) | 22, 166 |
| PfoI | TCCNGGA | 1 cut(s) | 111 |
| PkrI | GCNGC | 6 cut(s) | 243, 276, 328, 331, 619, 665 |
| PleI | GAGTC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 244 |
| Psp1406I | AACGTT | 1 cut(s) | 591 |
| Psp6I | CCWGG | 2 cut(s) | 269, 658 |
| PspFI | CCCAGC | 1 cut(s) | 531 |
| PspGI | CCWGG | 2 cut(s) | 269, 658 |
| PspN4I | GGNNCC | 2 cut(s) | 224, 424 |
| PspPI | GGNCC | 2 cut(s) | 43, 423 |
| PstNI | CAGNNNCTG | 2 cut(s) | 734, 746 |
| PsuI | RGATCY | 2 cut(s) | 190, 406 |
| RsaI | GTAC | 1 cut(s) | 764 |
| RsaNI | GTAC | 1 cut(s) | 763 |
| RseI | CAYNNNNRTG | 1 cut(s) | 68 |
| SatI | GCNGC | 6 cut(s) | 242, 275, 327, 330, 618, 664 |
| Sau3AI | GATC | 5 cut(s) | 144, 190, 373, 406, 502 |
| Sau96I | GGNCC | 2 cut(s) | 43, 423 |
| SchI | GAGTC | 1 cut(s) | 244 |
| ScrFI | CCNGG | 3 cut(s) | 113, 271, 660 |
| SduI | GDGCHC | 2 cut(s) | 53, 561 |
| SetI | ASST | 8 cut(s) | 35, 128, 282, 316, 483, 594, 691, 748 |
| SfaNI | GCATC | 2 cut(s) | 175, 401 |
| SfcI | CTRYAG | 1 cut(s) | 66 |
| SfuI | TTCGAA | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 68 |
| Sse9I | AATT | 2 cut(s) | 138, 461 |
| SseBI | AGGCCT | 1 cut(s) | 647 |
| SsiI | CCGC | 9 cut(s) | 75, 229, 260, 330, 371, 390, 412, 699, 779 |
| SspMI | CTAG | 1 cut(s) | 540 |
| StuI | AGGCCT | 1 cut(s) | 647 |
| StyD4I | CCNGG | 3 cut(s) | 111, 269, 658 |
| StyI | CCWWGG | 2 cut(s) | 517, 648 |
| TaaI | ACNGT | 2 cut(s) | 58, 613 |
| TaiI | ACGT | 1 cut(s) | 594 |
| TaqI | TCGA | 4 cut(s) | 29, 101, 162, 237 |
| TasI | AATT | 2 cut(s) | 138, 461 |
| TauI | GCSGC | 1 cut(s) | 332 |
| TfiI | GAWTC | 2 cut(s) | 22, 166 |
| TscAI | CASTG | 1 cut(s) | 61 |
| TseFI | GTSAC | 4 cut(s) | 280, 344, 715, 748 |
| TseI | GCWGC | 5 cut(s) | 241, 274, 326, 617, 663 |
| Tsp45I | GTSAC | 4 cut(s) | 280, 344, 715, 748 |
| TspDTI | ATGAA | 1 cut(s) | 672 |
| TspRI | CASTG | 1 cut(s) | 61 |
| XspI | CTAG | 1 cut(s) | 540 |