Rmu_sc0000533.1_g000055

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
OG0000057
Physical Location & Seq
Reverse (-)
189201 .. 190249
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000533.1_g000055.1.cds

Sequence Viewer

Length: 825 bp
atggaggctatcgcgaaccaaaccaagcagactgcgttagatatggcaggtcttcgcaaggacggcgctaacctcgcaaccgaggtggccatgcagagagccgaattgaaccaggttagcagcaataccgctaccccttccgcaaacgttgctgctacaccactgaaaaataaagagcaagctctggttatcggcggcagcaaagaaaatgccacctcgccatgcggacaaaccaccagacagaagcatcaggcctcgaaagctggcggaacctcgtccaactctgctacattcattcaatacgacagcgatggggcagaaaacatataccaagaactgtcaggaagagaggggacaacgactgtaaaccaagaaatacccttacaggctgctcgccagactgtggcgacgccacttcctcctccgggcccagaatacgtaagatgtgaaaaggtagaggagatgatcaggttagttaattctagggcccaactggatggggtctatgagggacctttccctccgcatatcatgctcgcgccctttcccaggggttataaaaatatcatattttctacttttttaggggaagacatagagtatgcggcaacccatttggccaggtttagggtgcaatacggccagtaccagaatgatgatatcctcaaatgcaagatctttggtacttctctttcagaagttgcctttagatggttctcaaagcttcgaccaggaacagtggcagattggccggcgatggagatgcttttccgagaaaccttcggagccattgagcctgaggtggacttggcttctctcacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

274

Amino Acids

29.97

Weight (kDa)

5.39

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 403
AccII CGCG 2 cut(s) 14, 539
AciI CCGC 7 cut(s) 129, 141, 195, 225, 267, 524, 605
AclI AACGTT 1 cut(s) 147
AcoI YGGCCR 4 cut(s) 87, 618, 640, 749
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 2 cut(s) 647, 685
AfiI CCNNNNNNNGG 5 cut(s) 403, 425, 549, 627, 711
AgsI TTSAA 2 cut(s) 109, 299
AjnI CCWGG 4 cut(s) 111, 548, 620, 730
AluBI AGCT 3 cut(s) 182, 263, 724
AluI AGCT 3 cut(s) 182, 263, 724
AoxI GGCC 7 cut(s) 87, 252, 427, 486, 618, 640, 749
ApaI GGGCCC 2 cut(s) 431, 490
ApeKI GCWGC 4 cut(s) 120, 152, 198, 389
AspLEI GCGC 2 cut(s) 68, 541
AspS9I GGNCC 5 cut(s) 427, 428, 486, 487, 512
AsuC2I CCSGG 1 cut(s) 426
AvaII GGWCC 1 cut(s) 512
AxyI CCTNAGG 1 cut(s) 798
BaeGI GKGCMC 2 cut(s) 431, 490
BalI TGGCCA 2 cut(s) 89, 620
BanII GRGCYC 2 cut(s) 431, 490
BbsI GAAGAC 2 cut(s) 44, 597
BbvI GCAGC 4 cut(s) 132, 139, 210, 376
BccI CCATC 4 cut(s) 305, 491, 705, 751
BceAI ACGGC 2 cut(s) 79, 655
BcgI CGANNNNNNTGC 2 cut(s) 745, 779
BciT130I CCWGG 4 cut(s) 113, 550, 622, 732
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 426
BfaI CTAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 675
BisI GCNGC 6 cut(s) 121, 153, 196, 199, 390, 606
BlsI GCNGC 6 cut(s) 122, 154, 197, 200, 391, 607
Bme1390I CCNGG 5 cut(s) 113, 426, 550, 622, 732
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 5 cut(s) 427, 428, 486, 487, 512
BmiI GGNNCC 5 cut(s) 271, 429, 488, 513, 787
BmrFI CCNGG 5 cut(s) 113, 426, 550, 622, 732
BmsI GCATC 2 cut(s) 256, 753
BpiI GAAGAC 2 cut(s) 44, 597
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 439
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 81, 548, 549
Bsc4I CCNNNNNNNGG 5 cut(s) 403, 425, 549, 627, 711
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 498, 643
Bse21I CCTNAGG 1 cut(s) 798
BseBI CCWGG 4 cut(s) 113, 550, 622, 732
BseDI CCNNGG 3 cut(s) 81, 548, 549
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 5 cut(s) 403, 425, 549, 627, 711
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 2 cut(s) 498, 643
BseRI GAGGAG 2 cut(s) 411, 473
BseSI GKGCMC 2 cut(s) 431, 490
BseXI GCAGC 4 cut(s) 132, 139, 210, 376
Bsh1236I CGCG 2 cut(s) 14, 539
BshFI GGCC 7 cut(s) 89, 254, 429, 488, 620, 642, 751
BsiSI CCGG 2 cut(s) 425, 752
BslFI GGGAC 2 cut(s) 367, 525
BslI CCNNNNNNNGG 5 cut(s) 403, 425, 549, 627, 711
BsmFI GGGAC 2 cut(s) 367, 525
BsnI GGCC 7 cut(s) 89, 254, 429, 488, 620, 642, 751
Bsp120I GGGCCC 2 cut(s) 427, 486
Bsp1286I GDGCHC 2 cut(s) 431, 490
Bsp143I GATC 2 cut(s) 465, 675
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 7 cut(s) 129, 141, 195, 225, 267, 524, 605
BspANI GGCC 7 cut(s) 89, 254, 429, 488, 620, 642, 751
BspCNI CTCAG 1 cut(s) 790
BspFNI CGCG 2 cut(s) 14, 539
BspLI GGNNCC 5 cut(s) 271, 429, 488, 513, 787
BspMI ACCTGC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 498, 643
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 3 cut(s) 81, 548, 549
BssMI GATC 2 cut(s) 465, 675
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 4 cut(s) 113, 550, 622, 732
Bst4CI ACNGT 4 cut(s) 339, 364, 403, 739
Bst6I CTCTTC 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 410
BstAPI GCANNNNNTGC 2 cut(s) 149, 532
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 5 cut(s) 180, 265, 394, 537, 753
BstDEI CTNAG 2 cut(s) 798, 822
BstENI CCTNNNNNAGG 1 cut(s) 547
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 2 cut(s) 14, 539
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 541
BstKTI GATC 2 cut(s) 468, 678
BstMBI GATC 2 cut(s) 465, 675
BstMWI GCNNNNNNNGC 5 cut(s) 63, 74, 149, 260, 532
BstNI CCWGG 4 cut(s) 113, 550, 622, 732
BstSCI CCNGG 5 cut(s) 111, 424, 548, 620, 730
BstSLI GKGCMC 2 cut(s) 431, 490
BstSNI TACGTA 1 cut(s) 439
BstUI CGCG 2 cut(s) 14, 539
BstV1I GCAGC 4 cut(s) 132, 139, 210, 376
BstV2I GAAGAC 2 cut(s) 44, 597
BstX2I RGATCY 1 cut(s) 675
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 1 cut(s) 675
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 7 cut(s) 89, 254, 429, 488, 620, 642, 751
BtgZI GCGATG 2 cut(s) 324, 770
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 2 cut(s) 161, 744
BtuMI TCGCGA 1 cut(s) 14
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 5 cut(s) 180, 265, 394, 537, 753
CfoI GCGC 2 cut(s) 68, 541
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 5 cut(s) 427, 428, 486, 487, 512
CseI GACGC 1 cut(s) 418
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 2 cut(s) 646, 684
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 3 cut(s) 91, 222, 532
CviQI GTAC 2 cut(s) 646, 684
DdeI CTNAG 2 cut(s) 798, 822
DpnI GATC 2 cut(s) 467, 677
DpnII GATC 2 cut(s) 465, 675
EaeI YGGCCR 4 cut(s) 87, 618, 640, 749
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 282
Eco105I TACGTA 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 254
Eco24I GRGCYC 2 cut(s) 431, 490
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 512
Eco81I CCTNAGG 1 cut(s) 798
EcoNI CCTNNNNNAGG 1 cut(s) 547
EcoO109I RGGNCCY 2 cut(s) 486, 512
EcoRII CCWGG 4 cut(s) 111, 548, 620, 730
EcoRV GATATC 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 431, 490
FaeI CATG 3 cut(s) 94, 225, 535
FaqI GGGAC 2 cut(s) 367, 525
FatI CATG 3 cut(s) 90, 221, 531
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 6 cut(s) 121, 153, 196, 199, 390, 606
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 2 cut(s) 431, 490
Fsp4HI GCNGC 6 cut(s) 121, 153, 196, 199, 390, 606
FspBI CTAG 1 cut(s) 483
GlaI GCGC 2 cut(s) 67, 540
GluI GCNGC 6 cut(s) 121, 153, 196, 199, 390, 606
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 7 cut(s) 89, 254, 429, 488, 620, 642, 751
HapII CCGG 2 cut(s) 425, 752
HgaI GACGC 1 cut(s) 418
HhaI GCGC 2 cut(s) 68, 541
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 3 cut(s) 94, 225, 535
Hin6I GCGC 2 cut(s) 66, 539
HinP1I GCGC 2 cut(s) 66, 539
HindIII AAGCTT 1 cut(s) 722
HpaII CCGG 2 cut(s) 425, 752
Hpy166II GTNNAC 2 cut(s) 367, 805
Hpy188I TCNGA 3 cut(s) 697, 773, 785
Hpy188III TCNNGA 2 cut(s) 13, 342
Hpy8I GTNNAC 2 cut(s) 367, 805
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 147, 790
HpyCH4III ACNGT 4 cut(s) 339, 364, 403, 739
HpyCH4IV ACGT 2 cut(s) 147, 438
HpyCH4V TGCA 3 cut(s) 94, 634, 672
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 74, 149, 260, 532
HpyF3I CTNAG 2 cut(s) 798, 822
HpySE526I ACGT 2 cut(s) 147, 438
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 3 cut(s) 94, 225, 535
HspAI GCGC 2 cut(s) 66, 539
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 2 cut(s) 465, 675
LmnI GCTCC 1 cut(s) 785
Lsp1109I GCAGC 4 cut(s) 132, 139, 210, 376
LweI GCATC 2 cut(s) 256, 753
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 147, 438
MalI GATC 2 cut(s) 467, 677
MboI GATC 2 cut(s) 465, 675
MboII GAAGA 3 cut(s) 44, 357, 602
MflI RGATCY 1 cut(s) 675
MhlI GDGCHC 2 cut(s) 431, 490
MlsI TGGCCA 2 cut(s) 89, 620
MluCI AATT 2 cut(s) 104, 478
MluNI TGGCCA 2 cut(s) 89, 620
MmeI TCCRAC 1 cut(s) 303
Mox20I TGGCCA 2 cut(s) 89, 620
MroNI GCCGGC 1 cut(s) 751
MscI TGGCCA 2 cut(s) 89, 620
MseI TTAA 1 cut(s) 477
Msp20I TGGCCA 2 cut(s) 89, 620
MspI CCGG 2 cut(s) 425, 752
MspR9I CCNGG 5 cut(s) 113, 426, 550, 622, 732
MvaI CCWGG 4 cut(s) 113, 550, 622, 732
MvnI CGCG 2 cut(s) 14, 539
MwoI GCNNNNNNNGC 5 cut(s) 63, 74, 149, 260, 532
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 1 cut(s) 426
NdeII GATC 2 cut(s) 465, 675
NgoMIV GCCGGC 1 cut(s) 751
NlaIII CATG 3 cut(s) 94, 225, 535
NlaIV GGNNCC 5 cut(s) 271, 429, 488, 513, 787
NruI TCGCGA 1 cut(s) 14
PasI CCCWGGG 1 cut(s) 549
PceI AGGCCT 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 753
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 6 cut(s) 122, 154, 197, 200, 391, 607
Ppu21I YACGTR 1 cut(s) 439
PpuMI RGGWCCY 1 cut(s) 512
PsiI TTATAA 1 cut(s) 558
Psp1406I AACGTT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 4 cut(s) 111, 548, 620, 730
PspGI CCWGG 4 cut(s) 111, 548, 620, 730
PspN4I GGNNCC 5 cut(s) 271, 429, 488, 513, 787
PspOMI GGGCCC 2 cut(s) 427, 486
PspPI GGNCC 5 cut(s) 427, 428, 486, 487, 512
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 1 cut(s) 675
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 2 cut(s) 647, 685
RsaNI GTAC 2 cut(s) 646, 684
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 6 cut(s) 121, 153, 196, 199, 390, 606
Sau3AI GATC 2 cut(s) 465, 675
Sau96I GGNCC 5 cut(s) 427, 428, 486, 487, 512
ScrFI CCNGG 5 cut(s) 113, 426, 550, 622, 732
SduI GDGCHC 2 cut(s) 431, 490
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 256, 753
SinI GGWCC 1 cut(s) 512
SnaBI TACGTA 1 cut(s) 439
Sse9I AATT 2 cut(s) 104, 478
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 7 cut(s) 129, 141, 195, 225, 267, 524, 605
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 5 cut(s) 111, 424, 548, 620, 730
TaaI ACNGT 4 cut(s) 339, 364, 403, 739
TaiI ACGT 2 cut(s) 150, 441
TaqI TCGA 2 cut(s) 257, 727
TasI AATT 2 cut(s) 104, 478
TauI GCSGC 2 cut(s) 198, 608
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 168, 744
TseI GCWGC 4 cut(s) 120, 152, 198, 389
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 2 cut(s) 168, 744
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 547
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.