Retrotransposon gag protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 93, 151, 291 |
| AclWI | GGATC | 2 cut(s) | 115, 371 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcuI | CTGAAG | 2 cut(s) | 92, 447 |
| AfaI | GTAC | 2 cut(s) | 104, 406 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 312, 343 |
| AgsI | TTSAA | 5 cut(s) | 16, 139, 229, 268, 474 |
| AjnI | CCWGG | 2 cut(s) | 325, 447 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 3 cut(s) | 10, 443, 505 |
| AluI | AGCT | 3 cut(s) | 10, 443, 505 |
| Alw21I | GWGCWC | 1 cut(s) | 507 |
| AlwI | GGATC | 2 cut(s) | 115, 371 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 416 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApeKI | GCWGC | 2 cut(s) | 347, 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 1 cut(s) | 448 |
| BanII | GRGCYC | 1 cut(s) | 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 507 |
| BbvI | GCAGC | 2 cut(s) | 334, 430 |
| BccI | CCATC | 3 cut(s) | 64, 280, 366 |
| BciT130I | CCWGG | 2 cut(s) | 327, 449 |
| BfaI | CTAG | 1 cut(s) | 402 |
| BglII | AGATCT | 1 cut(s) | 49 |
| BisI | GCNGC | 3 cut(s) | 291, 348, 444 |
| BlsI | GCNGC | 3 cut(s) | 292, 349, 445 |
| Bme1390I | CCNGG | 2 cut(s) | 327, 449 |
| BmrFI | CCNGG | 2 cut(s) | 327, 449 |
| Bpu10I | CCTNAGC | 1 cut(s) | 278 |
| BsaJI | CCNNGG | 4 cut(s) | 234, 325, 326, 447 |
| BsaWI | WCCGGW | 2 cut(s) | 458, 507 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 312, 343 |
| Bse1I | ACTGG | 3 cut(s) | 168, 249, 366 |
| BseBI | CCWGG | 2 cut(s) | 327, 449 |
| BseDI | CCNNGG | 4 cut(s) | 234, 325, 326, 447 |
| BseGI | GGATG | 1 cut(s) | 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 312, 343 |
| BseMII | CTCAG | 3 cut(s) | 80, 292, 367 |
| BseNI | ACTGG | 3 cut(s) | 168, 249, 366 |
| BseXI | GCAGC | 2 cut(s) | 334, 430 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 1 cut(s) | 507 |
| BsiSI | CCGG | 3 cut(s) | 41, 459, 508 |
| BslFI | GGGAC | 2 cut(s) | 43, 328 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 312, 343 |
| BsmFI | GGGAC | 2 cut(s) | 43, 328 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 507 |
| Bsp143I | GATC | 3 cut(s) | 49, 120, 376 |
| Bsp19I | CCATGG | 1 cut(s) | 234 |
| BspACI | CCGC | 3 cut(s) | 93, 151, 291 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 3 cut(s) | 79, 291, 366 |
| BspPI | GGATC | 2 cut(s) | 115, 371 |
| BsrI | ACTGG | 3 cut(s) | 168, 249, 366 |
| BssECI | CCNNGG | 4 cut(s) | 234, 325, 326, 447 |
| BssMI | GATC | 3 cut(s) | 49, 120, 376 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 2 cut(s) | 327, 449 |
| Bst4CI | ACNGT | 1 cut(s) | 495 |
| BstDEI | CTNAG | 4 cut(s) | 66, 187, 278, 353 |
| BstDSI | CCRYGG | 1 cut(s) | 234 |
| BstF5I | GGATG | 1 cut(s) | 321 |
| BstKTI | GATC | 3 cut(s) | 52, 123, 379 |
| BstMBI | GATC | 3 cut(s) | 49, 120, 376 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 173 |
| BstNI | CCWGG | 2 cut(s) | 327, 449 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstSCI | CCNGG | 2 cut(s) | 325, 447 |
| BstV1I | GCAGC | 2 cut(s) | 334, 430 |
| BstX2I | RGATCY | 2 cut(s) | 49, 120 |
| BstYI | RGATCY | 2 cut(s) | 49, 120 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtgI | CCRYGG | 1 cut(s) | 234 |
| BtsCI | GGATG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 1 cut(s) | 116 |
| CaiI | CAGNNNCTG | 1 cut(s) | 416 |
| Csp6I | GTAC | 2 cut(s) | 103, 405 |
| CviAII | CATG | 4 cut(s) | 100, 215, 223, 235 |
| CviQI | GTAC | 2 cut(s) | 103, 405 |
| DdeI | CTNAG | 4 cut(s) | 66, 187, 278, 353 |
| DpnI | GATC | 3 cut(s) | 51, 122, 378 |
| DpnII | GATC | 3 cut(s) | 49, 120, 376 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Ecl136II | GAGCTC | 1 cut(s) | 505 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco24I | GRGCYC | 1 cut(s) | 507 |
| Eco53kI | GAGCTC | 1 cut(s) | 505 |
| Eco57I | CTGAAG | 2 cut(s) | 92, 447 |
| EcoICRI | GAGCTC | 1 cut(s) | 505 |
| EcoRII | CCWGG | 2 cut(s) | 325, 447 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| EcoT38I | GRGCYC | 1 cut(s) | 507 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 4 cut(s) | 103, 218, 226, 238 |
| FaiI | YATR | 7 cut(s) | 101, 216, 224, 236, 296, 319, 387 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 2 cut(s) | 43, 328 |
| FatI | CATG | 4 cut(s) | 99, 214, 222, 234 |
| FauI | CCCGC | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 3 cut(s) | 291, 348, 444 |
| FokI | GGATG | 1 cut(s) | 308 |
| FriOI | GRGCYC | 1 cut(s) | 507 |
| Fsp4HI | GCNGC | 3 cut(s) | 291, 348, 444 |
| FspBI | CTAG | 1 cut(s) | 402 |
| GluI | GCNGC | 3 cut(s) | 291, 348, 444 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| HapII | CCGG | 3 cut(s) | 41, 459, 508 |
| Hin1II | CATG | 4 cut(s) | 103, 218, 226, 238 |
| HinfI | GANTC | 4 cut(s) | 89, 145, 398, 422 |
| HpaII | CCGG | 3 cut(s) | 41, 459, 508 |
| HphI | GGTGA | 1 cut(s) | 448 |
| Hpy188I | TCNGA | 3 cut(s) | 69, 120, 427 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 124 |
| HpyAV | CCTTC | 2 cut(s) | 34, 116 |
| HpyCH4III | ACNGT | 1 cut(s) | 495 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 2 cut(s) | 350, 498 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 173 |
| HpyF3I | CTNAG | 4 cut(s) | 66, 187, 278, 353 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 4 cut(s) | 103, 218, 226, 238 |
| Kzo9I | GATC | 3 cut(s) | 49, 120, 376 |
| LmnI | GCTCC | 1 cut(s) | 510 |
| Lsp1109I | GCAGC | 2 cut(s) | 334, 430 |
| MaeI | CTAG | 1 cut(s) | 402 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 247 |
| MalI | GATC | 3 cut(s) | 51, 122, 378 |
| MboI | GATC | 3 cut(s) | 49, 120, 376 |
| MboII | GAAGA | 2 cut(s) | 440, 443 |
| MflI | RGATCY | 2 cut(s) | 49, 120 |
| MhlI | GDGCHC | 1 cut(s) | 507 |
| MluCI | AATT | 2 cut(s) | 170, 229 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MnlI | CCTC | 3 cut(s) | 316, 388, 406 |
| MroXI | GAANNNNTTC | 1 cut(s) | 11 |
| MslI | CAYNNNNRTG | 1 cut(s) | 68 |
| MspA1I | CMGCKG | 1 cut(s) | 95 |
| MspI | CCGG | 3 cut(s) | 41, 459, 508 |
| MspR9I | CCNGG | 2 cut(s) | 327, 449 |
| MvaI | CCWGG | 2 cut(s) | 327, 449 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 173 |
| NcoI | CCATGG | 1 cut(s) | 234 |
| NdeII | GATC | 3 cut(s) | 49, 120, 376 |
| NlaIII | CATG | 4 cut(s) | 103, 218, 226, 238 |
| NmuCI | GTSAC | 1 cut(s) | 247 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PasI | CCCWGGG | 1 cut(s) | 326 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 1 cut(s) | 11 |
| PfeI | GAWTC | 3 cut(s) | 89, 145, 398 |
| PkrI | GCNGC | 3 cut(s) | 292, 349, 445 |
| PleI | GAGTC | 1 cut(s) | 430 |
| PpsI | GAGTC | 1 cut(s) | 430 |
| Psp124BI | GAGCTC | 1 cut(s) | 507 |
| Psp6I | CCWGG | 2 cut(s) | 325, 447 |
| PspGI | CCWGG | 2 cut(s) | 325, 447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 416 |
| PsuI | RGATCY | 2 cut(s) | 49, 120 |
| RsaI | GTAC | 2 cut(s) | 104, 406 |
| RsaNI | GTAC | 2 cut(s) | 103, 405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 68 |
| SacI | GAGCTC | 1 cut(s) | 507 |
| SatI | GCNGC | 3 cut(s) | 291, 348, 444 |
| Sau3AI | GATC | 3 cut(s) | 49, 120, 376 |
| SchI | GAGTC | 1 cut(s) | 431 |
| ScrFI | CCNGG | 2 cut(s) | 327, 449 |
| SduI | GDGCHC | 1 cut(s) | 507 |
| SetI | ASST | 6 cut(s) | 12, 26, 108, 144, 445, 507 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 68 |
| Sse9I | AATT | 2 cut(s) | 170, 229 |
| SsiI | CCGC | 3 cut(s) | 93, 151, 291 |
| SspMI | CTAG | 1 cut(s) | 402 |
| SstI | GAGCTC | 1 cut(s) | 507 |
| StyD4I | CCNGG | 2 cut(s) | 325, 447 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaaI | ACNGT | 1 cut(s) | 495 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TaqI | TCGA | 2 cut(s) | 36, 308 |
| TasI | AATT | 2 cut(s) | 170, 229 |
| TatI | WGTACW | 1 cut(s) | 404 |
| TauI | GCSGC | 1 cut(s) | 293 |
| TfiI | GAWTC | 3 cut(s) | 89, 145, 398 |
| TscAI | CASTG | 1 cut(s) | 116 |
| TseFI | GTSAC | 1 cut(s) | 247 |
| TseI | GCWGC | 2 cut(s) | 347, 443 |
| Tsp45I | GTSAC | 1 cut(s) | 247 |
| TspDTI | ATGAA | 1 cut(s) | 311 |
| TspRI | CASTG | 1 cut(s) | 116 |
| XceI | RCATGY | 1 cut(s) | 226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 11 |
| XspI | CTAG | 1 cut(s) | 402 |