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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 392 |
| Acc36I | ACCTGC | 2 cut(s) | 298, 392 |
| AccIII | TCCGGA | 1 cut(s) | 15 |
| AciI | CCGC | 3 cut(s) | 302, 305, 370 |
| AclWI | GGATC | 4 cut(s) | 7, 122, 137, 268 |
| AcoI | YGGCCR | 1 cut(s) | 299 |
| AfaI | GTAC | 1 cut(s) | 37 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 15, 107 |
| AgsI | TTSAA | 2 cut(s) | 94, 208 |
| AluBI | AGCT | 3 cut(s) | 289, 350, 389 |
| AluI | AGCT | 3 cut(s) | 289, 350, 389 |
| Alw21I | GWGCWC | 2 cut(s) | 187, 352 |
| AlwI | GGATC | 4 cut(s) | 7, 122, 137, 268 |
| Ama87I | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| Aor13HI | TCCGGA | 1 cut(s) | 15 |
| AoxI | GGCC | 2 cut(s) | 151, 299 |
| ApeKI | GCWGC | 1 cut(s) | 244 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 15, 47 |
| AsuC2I | CCSGG | 2 cut(s) | 223, 224 |
| AsuHPI | GGTGA | 4 cut(s) | 73, 148, 416, 419 |
| AvaI | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| BanII | GRGCYC | 1 cut(s) | 352 |
| BbsI | GAAGAC | 1 cut(s) | 416 |
| Bbv12I | GWGCWC | 2 cut(s) | 187, 352 |
| BbvI | GCAGC | 1 cut(s) | 231 |
| BccI | CCATC | 2 cut(s) | 135, 263 |
| BcnI | CCSGG | 2 cut(s) | 223, 224 |
| BfaI | CTAG | 1 cut(s) | 290 |
| BfmI | CTRYAG | 1 cut(s) | 282 |
| BfuAI | ACCTGC | 2 cut(s) | 298, 392 |
| BisI | GCNGC | 3 cut(s) | 245, 302, 305 |
| BlsI | GCNGC | 3 cut(s) | 246, 303, 306 |
| Bme1390I | CCNGG | 2 cut(s) | 223, 224 |
| BmeT110I | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| BmrFI | CCNGG | 2 cut(s) | 223, 224 |
| BmsI | GCATC | 1 cut(s) | 374 |
| BpiI | GAAGAC | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 1 cut(s) | 396 |
| BpuMI | CCSGG | 2 cut(s) | 223, 224 |
| Bsa29I | ATCGAT | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 4 cut(s) | 135, 222, 223, 321 |
| BsaWI | WCCGGW | 1 cut(s) | 15 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 15, 107 |
| BseAI | TCCGGA | 1 cut(s) | 15 |
| BseCI | ATCGAT | 1 cut(s) | 88 |
| BseDI | CCNNGG | 4 cut(s) | 135, 222, 223, 321 |
| BseGI | GGATG | 2 cut(s) | 218, 365 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 15, 107 |
| BseRI | GAGGAG | 1 cut(s) | 167 |
| BseX3I | CGGCCG | 1 cut(s) | 299 |
| BseXI | GCAGC | 1 cut(s) | 231 |
| Bsh1285I | CGRYCG | 2 cut(s) | 45, 302 |
| BshFI | GGCC | 2 cut(s) | 153, 301 |
| BshVI | ATCGAT | 1 cut(s) | 88 |
| BsiEI | CGRYCG | 2 cut(s) | 45, 302 |
| BsiHKAI | GWGCWC | 2 cut(s) | 187, 352 |
| BsiHKCI | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| BsiSI | CCGG | 3 cut(s) | 16, 223, 298 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 15, 107 |
| BsnI | GGCC | 2 cut(s) | 153, 301 |
| BsoBI | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 352 |
| Bsp13I | TCCGGA | 1 cut(s) | 15 |
| Bsp143I | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| BspACI | CCGC | 3 cut(s) | 302, 305, 370 |
| BspANI | GGCC | 2 cut(s) | 153, 301 |
| BspDI | ATCGAT | 1 cut(s) | 88 |
| BspEI | TCCGGA | 1 cut(s) | 15 |
| BspMI | ACCTGC | 2 cut(s) | 298, 392 |
| BspPI | GGATC | 4 cut(s) | 7, 122, 137, 268 |
| BssECI | CCNNGG | 4 cut(s) | 135, 222, 223, 321 |
| BssMI | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 1 cut(s) | 340 |
| BstF5I | GGATG | 2 cut(s) | 218, 365 |
| BstKTI | GATC | 7 cut(s) | 15, 45, 66, 117, 145, 251, 276 |
| BstMBI | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| BstMCI | CGRYCG | 2 cut(s) | 45, 302 |
| BstSCI | CCNGG | 2 cut(s) | 221, 222 |
| BstSFI | CTRYAG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 1 cut(s) | 231 |
| BstV2I | GAAGAC | 1 cut(s) | 416 |
| BstX2I | RGATCY | 1 cut(s) | 114 |
| BstYI | RGATCY | 1 cut(s) | 114 |
| BstZI | CGGCCG | 1 cut(s) | 299 |
| Bsu15I | ATCGAT | 1 cut(s) | 88 |
| BsuRI | GGCC | 2 cut(s) | 153, 301 |
| BsuTUI | ATCGAT | 1 cut(s) | 88 |
| BtsCI | GGATG | 2 cut(s) | 218, 365 |
| BveI | ACCTGC | 2 cut(s) | 298, 392 |
| Cac8I | GCNNGC | 1 cut(s) | 340 |
| Cfr9I | CCCGGG | 1 cut(s) | 222 |
| ClaI | ATCGAT | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 36 |
| CviJI | RGCY | 9 cut(s) | 133, 153, 232, 244, 254, 289, 301, 350, 389 |
| CviKI_1 | RGCY | 9 cut(s) | 133, 153, 232, 244, 254, 289, 301, 350, 389 |
| CviQI | GTAC | 1 cut(s) | 36 |
| DpnI | GATC | 7 cut(s) | 14, 44, 65, 116, 144, 250, 275 |
| DpnII | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| EaeI | YGGCCR | 1 cut(s) | 299 |
| EagI | CGGCCG | 1 cut(s) | 299 |
| Eam1104I | CTCTTC | 1 cut(s) | 309 |
| EarI | CTCTTC | 1 cut(s) | 309 |
| Ecl136II | GAGCTC | 1 cut(s) | 350 |
| EclXI | CGGCCG | 1 cut(s) | 299 |
| Eco147I | AGGCCT | 1 cut(s) | 153 |
| Eco24I | GRGCYC | 1 cut(s) | 352 |
| Eco52I | CGGCCG | 1 cut(s) | 299 |
| Eco53kI | GAGCTC | 1 cut(s) | 350 |
| Eco88I | CYCGRG | 4 cut(s) | 134, 192, 222, 345 |
| EcoICRI | GAGCTC | 1 cut(s) | 350 |
| EcoT38I | GRGCYC | 1 cut(s) | 352 |
| FaiI | YATR | 6 cut(s) | 72, 200, 216, 272, 284, 392 |
| FauI | CCCGC | 1 cut(s) | 377 |
| Fnu4HI | GCNGC | 3 cut(s) | 245, 302, 305 |
| FokI | GGATG | 2 cut(s) | 205, 352 |
| FriOI | GRGCYC | 1 cut(s) | 352 |
| Fsp4HI | GCNGC | 3 cut(s) | 245, 302, 305 |
| FspBI | CTAG | 1 cut(s) | 290 |
| GluI | GCNGC | 3 cut(s) | 245, 302, 305 |
| HaeIII | GGCC | 2 cut(s) | 153, 301 |
| HapII | CCGG | 3 cut(s) | 16, 223, 298 |
| HinfI | GANTC | 3 cut(s) | 90, 294, 317 |
| HpaII | CCGG | 3 cut(s) | 16, 223, 298 |
| HphI | GGTGA | 4 cut(s) | 73, 148, 416, 419 |
| Hpy188I | TCNGA | 6 cut(s) | 42, 47, 102, 114, 182, 322 |
| Hpy188III | TCNNGA | 2 cut(s) | 16, 194 |
| HpyAV | CCTTC | 4 cut(s) | 15, 181, 202, 355 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 2 cut(s) | 120, 394 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Kpn2I | TCCGGA | 1 cut(s) | 15 |
| Kzo9I | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| LpnPI | CCDG | 6 cut(s) | 29, 74, 236, 293, 311, 387 |
| Lsp1109I | GCAGC | 1 cut(s) | 231 |
| LweI | GCATC | 1 cut(s) | 374 |
| MaeI | CTAG | 1 cut(s) | 290 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MalI | GATC | 7 cut(s) | 14, 44, 65, 116, 144, 250, 275 |
| MboI | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| MboII | GAAGA | 5 cut(s) | 156, 159, 326, 338, 416 |
| MflI | RGATCY | 1 cut(s) | 114 |
| MhlI | GDGCHC | 2 cut(s) | 187, 352 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 1 cut(s) | 92 |
| MnlI | CCTC | 7 cut(s) | 19, 89, 130, 164, 185, 188, 316 |
| MroI | TCCGGA | 1 cut(s) | 15 |
| MspI | CCGG | 3 cut(s) | 16, 223, 298 |
| MspR9I | CCNGG | 2 cut(s) | 223, 224 |
| NciI | CCSGG | 2 cut(s) | 223, 224 |
| NdeII | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| PaeR7I | CTCGAG | 1 cut(s) | 345 |
| PaqCI | CACCTGC | 1 cut(s) | 392 |
| PceI | AGGCCT | 1 cut(s) | 153 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 318 |
| PfeI | GAWTC | 2 cut(s) | 90, 294 |
| PkrI | GCNGC | 3 cut(s) | 246, 303, 306 |
| Ple19I | CGATCG | 1 cut(s) | 45 |
| PleI | GAGTC | 1 cut(s) | 325 |
| PpsI | GAGTC | 1 cut(s) | 325 |
| Psp124BI | GAGCTC | 1 cut(s) | 352 |
| PspXI | VCTCGAGB | 1 cut(s) | 345 |
| PsuI | RGATCY | 1 cut(s) | 114 |
| PvuI | CGATCG | 1 cut(s) | 45 |
| RsaI | GTAC | 1 cut(s) | 37 |
| RsaNI | GTAC | 1 cut(s) | 36 |
| SacI | GAGCTC | 1 cut(s) | 352 |
| SatI | GCNGC | 3 cut(s) | 245, 302, 305 |
| Sau3AI | GATC | 7 cut(s) | 12, 42, 63, 114, 142, 248, 273 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 2 cut(s) | 223, 224 |
| SduI | GDGCHC | 2 cut(s) | 187, 352 |
| SfaNI | GCATC | 1 cut(s) | 374 |
| SfcI | CTRYAG | 1 cut(s) | 282 |
| Sfr274I | CTCGAG | 1 cut(s) | 345 |
| SlaI | CTCGAG | 1 cut(s) | 345 |
| SmaI | CCCGGG | 1 cut(s) | 224 |
| SmlI | CTYRAG | 2 cut(s) | 345, 411 |
| SmoI | CTYRAG | 2 cut(s) | 345, 411 |
| SseBI | AGGCCT | 1 cut(s) | 153 |
| SsiI | CCGC | 3 cut(s) | 302, 305, 370 |
| SspMI | CTAG | 1 cut(s) | 290 |
| SstI | GAGCTC | 1 cut(s) | 352 |
| StuI | AGGCCT | 1 cut(s) | 153 |
| StyD4I | CCNGG | 2 cut(s) | 221, 222 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 6 cut(s) | 11, 88, 141, 312, 346, 384 |
| TauI | GCSGC | 2 cut(s) | 304, 307 |
| TfiI | GAWTC | 2 cut(s) | 90, 294 |
| TseI | GCWGC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 1 cut(s) | 345 |
| TspGWI | ACGGA | 3 cut(s) | 23, 135, 369 |
| TspMI | CCCGGG | 1 cut(s) | 222 |
| XhoI | CTCGAG | 1 cut(s) | 345 |
| XmaI | CCCGGG | 1 cut(s) | 222 |
| XspI | CTAG | 1 cut(s) | 290 |