Rmu_sc0015325.1_g000011

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015325.1
OG0000057
Physical Location & Seq
Reverse (-)
30978 .. 32345
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015325.1_g000011.1.cds

Sequence Viewer

Length: 1368 bp
atgatccagtcagtgggagaactcatcacagaggtgggtagcttcgaacatctttttagagagacagacgcaaggaagaatgcatccaaagggacatacgtactaggaaaacatagtactatagcggccctgagctaccagccggctacctatgacccttattaccatcatcacagtgaagaagtggttcaggatgacaacgaagaagaagagaatgatatcgctgctcatgaattaaccgggaggaagaatccagccctaaagcagctggaaatttccaaggaacctggcaagctcaaattgacggccttcaccaaacctgaattcgtgacatatacatatgatgccaataaggagcatgagatgatcgccgcgaagatggtgaagactgactttggaccttttcctcgaccagagcagctgaaagggaagaagtactacaagtttcacaacttgtggaatcacaacaccgcgaactgtgtgaagctcaaggaccagattcaagtatggcttaataatggcagtttgcaggtagaagctccagtaacggcagcagagctagtggacctggacccctttcctgacactgggaccaacatggtcgatgtggactggaccaagcagaaccagaggagaccgaccttggatttgaggacaagggagcgagatggaaagtctgtaacggatgagacacctgcaaagaggaaagctgaaccaattgttcaggcctcgcctgtggtcctatgctcacgatgcaaagaagaatgtggtatccaagtgtcgcatgacgaggtcgagcaaacatttcactttggctctttacagcccgtcaggtgggcttcgtcatcgcgaaactatcagccttctagcccgagggaaaaagagaaaatggagtcaccaccatccccaaaggactccaatttgttcaagaagctgagagcggtcgctgttgttcagaaacgtgaagagagtgccacgaacaggcgcaatgatgcactaaccaagccttacatcccgcctgcgccagccaccaccatcaaggaaggaaaatggtacaccagggaaaagggaaaggcggtggaaataagcacttctaagaagaggaaactgcagcgcaggttcggggaagccaagcgcgcgctagaggctctggaccagggcctgattaagccttcacaatttgtcaaatcacctgagcagtatcacaaagagatggaggcattagctgctaaaccgttaatggctccccgtagccttagaaaacaagtgagttcgctaacaagggcatttaagcctagtgttttttgcaggattactgaggagaggacacctccgatagctcaaaaggatagctcgccgactcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

455

Amino Acids

51.76

Weight (kDa)

9.2

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 3 cut(s) 520, 703, 1107
AccB7I CCANNNNNTGG 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 941
AccII CGCG 5 cut(s) 374, 473, 850, 1137, 1139
AciI CCGC 6 cut(s) 125, 372, 471, 941, 1016, 1076
AcsI RAATTY 2 cut(s) 273, 323
AfaI GTAC 4 cut(s) 102, 118, 437, 1055
AfiI CCNNNNNNNGG 4 cut(s) 13, 587, 834, 981
AgsI TTSAA 2 cut(s) 503, 928
AjnI CCWGG 4 cut(s) 286, 567, 1058, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 32
Alw26I GTCTC 3 cut(s) 56, 628, 683
AlwNI CAGNNNCTG 1 cut(s) 1162
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 4 cut(s) 126, 306, 726, 1159
ApeKI GCWGC 6 cut(s) 224, 265, 418, 551, 1111, 1226
ApoI RAATTY 2 cut(s) 273, 323
ArsI GACNNNNNNTTYG 2 cut(s) 631, 663
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 6 cut(s) 987, 1024, 1116, 1137, 1139, 1141
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 4 cut(s) 304, 394, 888, 1182
AsuII TTCGAA 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 8 cut(s) 398, 493, 565, 571, 591, 615, 739, 1153
BarI GAAGNNNNNNTAC 2 cut(s) 422, 454
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 6 cut(s) 211, 277, 430, 563, 1123, 1213
BccI CCATC 6 cut(s) 174, 373, 662, 910, 1043, 1207
BceAI ACGGC 2 cut(s) 321, 564
BciT130I CCWGG 4 cut(s) 288, 569, 1060, 1157
BciVI GTATCC 1 cut(s) 782
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 56, 628, 683
BfaI CTAG 5 cut(s) 104, 560, 867, 1142, 1296
BfmI CTRYAG 2 cut(s) 120, 1109
BfuAI ACCTGC 3 cut(s) 520, 703, 1107
BfuI GTATCC 1 cut(s) 782
BisI GCNGC 8 cut(s) 126, 225, 266, 372, 419, 552, 1112, 1227
BlsI GCNGC 8 cut(s) 127, 226, 267, 373, 420, 553, 1113, 1228
BmcAI AGTACT 2 cut(s) 118, 437
Bme1390I CCNGG 5 cut(s) 241, 288, 569, 1060, 1157
Bme18I GGWCC 8 cut(s) 398, 493, 565, 571, 591, 615, 739, 1153
BmeT110I CYCGRG 1 cut(s) 871
BmiI GGNNCC 4 cut(s) 285, 573, 592, 1245
BmrFI CCNGG 5 cut(s) 241, 288, 569, 1060, 1157
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 92, 334, 743, 982
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 392
BplI GAGNNNNNCTC 2 cut(s) 1315, 1347
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 2 cut(s) 131, 1194
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 628
BsaJI CCNNGG 5 cut(s) 279, 642, 872, 1059, 1156
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 587, 834, 981
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 4 cut(s) 7, 542, 592, 617
Bse3DI GCAATG 1 cut(s) 994
BseBI CCWGG 4 cut(s) 288, 569, 1060, 1157
BseDI CCNNGG 5 cut(s) 279, 642, 872, 1059, 1156
BseGI GGATG 5 cut(s) 83, 199, 691, 902, 1011
BseLI CCNNNNNNNGG 4 cut(s) 13, 587, 834, 981
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 4 cut(s) 122, 926, 1185, 1308
BseNI ACTGG 4 cut(s) 7, 542, 592, 617
BsePI GCGCGC 2 cut(s) 1135, 1137
BseRI GAGGAG 2 cut(s) 646, 1334
BseXI GCAGC 6 cut(s) 211, 277, 430, 563, 1123, 1213
Bsh1236I CGCG 5 cut(s) 374, 473, 850, 1137, 1139
Bsh1285I CGRYCG 1 cut(s) 945
BshFI GGCC 4 cut(s) 128, 308, 728, 1161
BsiEI CGRYCG 1 cut(s) 945
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 2 cut(s) 143, 240
BslFI GGGAC 2 cut(s) 106, 604
BslI CCNNNNNNNGG 4 cut(s) 13, 587, 834, 981
BsmAI GTCTC 3 cut(s) 56, 628, 683
BsmFI GGGAC 2 cut(s) 106, 604
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 4 cut(s) 128, 308, 728, 1161
Bso31I GGTCTC 1 cut(s) 628
BsoBI CYCGRG 1 cut(s) 871
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 2 cut(s) 3, 366
Bsp68I TCGCGA 1 cut(s) 850
BspACI CCGC 6 cut(s) 125, 372, 471, 941, 1016, 1076
BspANI GGCC 4 cut(s) 128, 308, 728, 1161
BspCNI CTCAG 4 cut(s) 123, 927, 1186, 1309
BspFNI CGCG 5 cut(s) 374, 473, 850, 1137, 1139
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 4 cut(s) 285, 573, 592, 1245
BspMAI CTGCAG 1 cut(s) 1113
BspMI ACCTGC 3 cut(s) 520, 703, 1107
BspT104I TTCGAA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 628
BsrBI CCGCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 994
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 4 cut(s) 7, 542, 592, 617
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 279, 642, 872, 1059, 1156
BssHII GCGCGC 2 cut(s) 1135, 1137
BssMI GATC 2 cut(s) 3, 366
BssT1I CCWWGG 2 cut(s) 279, 642
Bst2UI CCWGG 4 cut(s) 288, 569, 1060, 1157
Bst4CI ACNGT 3 cut(s) 176, 479, 1236
Bst6I CTCTTC 3 cut(s) 204, 960, 1094
BstAPI GCANNNNNTGC 1 cut(s) 1226
BstBAI YACGTR 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 7 cut(s) 144, 293, 1020, 1026, 1137, 1139, 1355
BstDEI CTNAG 6 cut(s) 131, 935, 1095, 1194, 1256, 1317
BstF5I GGATG 5 cut(s) 83, 199, 691, 902, 1011
BstFNI CGCG 5 cut(s) 374, 473, 850, 1137, 1139
BstHHI GCGC 6 cut(s) 987, 1024, 1116, 1137, 1139, 1141
BstKTI GATC 2 cut(s) 6, 369
BstMAI GTCTC 3 cut(s) 56, 628, 683
BstMBI GATC 2 cut(s) 3, 366
BstMCI CGRYCG 1 cut(s) 945
BstMWI GCNNNNNNNGC 4 cut(s) 753, 1136, 1145, 1226
BstNI CCWGG 4 cut(s) 288, 569, 1060, 1157
BstSCI CCNGG 5 cut(s) 239, 286, 567, 1058, 1155
BstSFI CTRYAG 2 cut(s) 120, 1109
BstSNI TACGTA 1 cut(s) 100
BstUI CGCG 5 cut(s) 374, 473, 850, 1137, 1139
BstV1I GCAGC 6 cut(s) 211, 277, 430, 563, 1123, 1213
BstV2I GAAGAC 1 cut(s) 392
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 4 cut(s) 128, 308, 728, 1161
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 5 cut(s) 83, 199, 691, 902, 1011
BtsIMutI CAGTG 3 cut(s) 18, 181, 585
BtuMI TCGCGA 1 cut(s) 850
BveI ACCTGC 3 cut(s) 520, 703, 1107
Cac8I GCNNGC 7 cut(s) 144, 293, 1020, 1026, 1137, 1139, 1355
CaiI CAGNNNCTG 1 cut(s) 1162
CciI TCATGA 1 cut(s) 229
CfoI GCGC 6 cut(s) 987, 1024, 1116, 1137, 1139, 1141
Cfr10I RCCGGY 1 cut(s) 142
CseI GACGC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 101, 117, 436, 1054
CviAII CATG 4 cut(s) 230, 359, 598, 785
CviQI GTAC 4 cut(s) 101, 117, 436, 1054
DdeI CTNAG 6 cut(s) 131, 935, 1095, 1194, 1256, 1317
DpnI GATC 2 cut(s) 5, 368
DpnII GATC 2 cut(s) 3, 366
Eam1104I CTCTTC 3 cut(s) 204, 960, 1094
EarI CTCTTC 3 cut(s) 204, 960, 1094
Eco105I TACGTA 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 279, 642
Eco147I AGGCCT 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 628
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 8 cut(s) 398, 493, 565, 571, 591, 615, 739, 1153
Eco88I CYCGRG 1 cut(s) 871
EcoO109I RGGNCCY 1 cut(s) 1159
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 4 cut(s) 286, 567, 1058, 1155
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 279, 642
EcoT22I ATGCAT 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 279, 642
FaeI CATG 4 cut(s) 233, 362, 601, 788
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 495, 527
FaqI GGGAC 2 cut(s) 106, 604
FatI CATG 4 cut(s) 229, 358, 597, 784
FauI CCCGC 1 cut(s) 1023
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 8 cut(s) 126, 225, 266, 372, 419, 552, 1112, 1227
FokI GGATG 5 cut(s) 70, 206, 698, 889, 998
Fsp4HI GCNGC 8 cut(s) 126, 225, 266, 372, 419, 552, 1112, 1227
FspBI CTAG 5 cut(s) 104, 560, 867, 1142, 1296
GlaI GCGC 6 cut(s) 986, 1023, 1115, 1136, 1138, 1140
GluI GCNGC 8 cut(s) 126, 225, 266, 372, 419, 552, 1112, 1227
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 4 cut(s) 128, 308, 728, 1161
HapII CCGG 2 cut(s) 143, 240
HgaI GACGC 1 cut(s) 77
HhaI GCGC 6 cut(s) 987, 1024, 1116, 1137, 1139, 1141
Hin1II CATG 4 cut(s) 233, 362, 601, 788
Hin6I GCGC 6 cut(s) 985, 1022, 1114, 1135, 1137, 1139
HinP1I GCGC 6 cut(s) 985, 1022, 1114, 1135, 1137, 1139
HinfI GANTC 6 cut(s) 250, 460, 499, 893, 914, 1360
HpaII CCGG 2 cut(s) 143, 240
HphI GGTGA 4 cut(s) 304, 394, 888, 1182
Hpy166II GTNNAC 3 cut(s) 565, 610, 1056
Hpy188I TCNGA 2 cut(s) 957, 1335
Hpy188III TCNNGA 8 cut(s) 191, 230, 328, 581, 750, 849, 928, 1151
Hpy8I GTNNAC 3 cut(s) 565, 610, 1056
HpyAV CCTTC 4 cut(s) 319, 873, 1037, 1182
HpyCH4III ACNGT 3 cut(s) 176, 479, 1236
HpyCH4IV ACGT 2 cut(s) 99, 961
HpyCH4V TGCA 7 cut(s) 83, 529, 698, 756, 995, 1111, 1308
HpyF10VI GCNNNNNNNGC 4 cut(s) 753, 1136, 1145, 1226
HpyF3I CTNAG 6 cut(s) 131, 935, 1095, 1194, 1256, 1317
HpySE526I ACGT 2 cut(s) 99, 961
Hsp92II CATG 4 cut(s) 233, 362, 601, 788
HspAI GCGC 6 cut(s) 985, 1022, 1114, 1135, 1137, 1139
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 3, 366
LmnI GCTCC 4 cut(s) 355, 544, 661, 1249
Lsp1109I GCAGC 6 cut(s) 211, 277, 430, 563, 1123, 1213
LweI GCATC 4 cut(s) 92, 334, 743, 982
MaeI CTAG 5 cut(s) 104, 560, 867, 1142, 1296
MaeII ACGT 2 cut(s) 99, 961
MaeIII GTNAC 4 cut(s) 328, 544, 679, 894
MalI GATC 2 cut(s) 5, 368
MbiI CCGCTC 1 cut(s) 941
MboI GATC 2 cut(s) 3, 366
MfeI CAATTG 1 cut(s) 717
MluCI AATT 7 cut(s) 233, 273, 299, 323, 717, 919, 1178
MlyI GAGTC 3 cut(s) 902, 908, 1354
Mph1103I ATGCAT 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 5 cut(s) 236, 513, 1167, 1238, 1290
MslI CAYNNNNRTG 2 cut(s) 32, 174
MspA1I CMGCKG 2 cut(s) 268, 421
MspI CCGG 2 cut(s) 143, 240
MspR9I CCNGG 5 cut(s) 241, 288, 569, 1060, 1157
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 4 cut(s) 288, 569, 1060, 1157
MvnI CGCG 5 cut(s) 374, 473, 850, 1137, 1139
MwoI GCNNNNNNNGC 4 cut(s) 753, 1136, 1145, 1226
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 340
NdeII GATC 2 cut(s) 3, 366
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 4 cut(s) 233, 362, 601, 788
NlaIV GGNNCC 4 cut(s) 285, 573, 592, 1245
NmuCI GTSAC 2 cut(s) 328, 894
NruI TCGCGA 1 cut(s) 850
NsiI ATGCAT 1 cut(s) 85
NspV TTCGAA 1 cut(s) 45
OliI CACNNNNGTG 1 cut(s) 32
PagI TCATGA 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 703
PauI GCGCGC 2 cut(s) 1135, 1137
PceI AGGCCT 1 cut(s) 728
PctI GAATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 250, 460, 499
PflFI GACNNNGTC 1 cut(s) 791
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 8 cut(s) 127, 226, 267, 373, 420, 553, 1113, 1228
PleI GAGTC 3 cut(s) 901, 908, 1354
PpsI GAGTC 3 cut(s) 901, 908, 1354
Ppu21I YACGTR 1 cut(s) 100
Psp6I CCWGG 4 cut(s) 286, 567, 1058, 1155
PspGI CCWGG 4 cut(s) 286, 567, 1058, 1155
PspN4I GGNNCC 4 cut(s) 285, 573, 592, 1245
PstI CTGCAG 1 cut(s) 1113
PstNI CAGNNNCTG 1 cut(s) 1162
PsyI GACNNNGTC 1 cut(s) 791
PteI GCGCGC 2 cut(s) 1135, 1137
PvuII CAGCTG 2 cut(s) 268, 421
RruI TCGCGA 1 cut(s) 850
RsaI GTAC 4 cut(s) 102, 118, 437, 1055
RsaNI GTAC 4 cut(s) 101, 117, 436, 1054
RseI CAYNNNNRTG 2 cut(s) 32, 174
SaqAI TTAA 5 cut(s) 236, 513, 1167, 1238, 1290
SatI GCNGC 8 cut(s) 126, 225, 266, 372, 419, 552, 1112, 1227
Sau3AI GATC 2 cut(s) 3, 366
ScaI AGTACT 2 cut(s) 118, 437
SchI GAGTC 3 cut(s) 902, 908, 1354
ScrFI CCNGG 5 cut(s) 241, 288, 569, 1060, 1157
SfaNI GCATC 4 cut(s) 92, 334, 743, 982
SfcI CTRYAG 2 cut(s) 120, 1109
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 8 cut(s) 398, 493, 565, 571, 591, 615, 739, 1153
SmiMI CAYNNNNRTG 2 cut(s) 32, 174
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SnaBI TACGTA 1 cut(s) 100
Sse9I AATT 7 cut(s) 233, 273, 299, 323, 717, 919, 1178
SseBI AGGCCT 1 cut(s) 728
SsiI CCGC 6 cut(s) 125, 372, 471, 941, 1016, 1076
SspMI CTAG 5 cut(s) 104, 560, 867, 1142, 1296
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 5 cut(s) 239, 286, 567, 1058, 1155
StyI CCWWGG 2 cut(s) 279, 642
TaaI ACNGT 3 cut(s) 176, 479, 1236
TaiI ACGT 2 cut(s) 102, 964
TaqI TCGA 4 cut(s) 45, 409, 603, 795
TaqII GACCGA 1 cut(s) 652
TasI AATT 7 cut(s) 233, 273, 299, 323, 717, 919, 1178
TatI WGTACW 2 cut(s) 116, 435
TauI GCSGC 2 cut(s) 128, 374
TfiI GAWTC 3 cut(s) 250, 460, 499
Tru1I TTAA 5 cut(s) 236, 513, 1167, 1238, 1290
Tru9I TTAA 5 cut(s) 236, 513, 1167, 1238, 1290
TscAI CASTG 3 cut(s) 18, 181, 592
TseFI GTSAC 2 cut(s) 328, 894
TseI GCWGC 6 cut(s) 224, 265, 418, 551, 1111, 1226
Tsp45I GTSAC 2 cut(s) 328, 894
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 3 cut(s) 18, 181, 592
Tth111I GACNNNGTC 1 cut(s) 791
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 8 cut(s) 398, 493, 565, 571, 591, 615, 739, 1153
XapI RAATTY 2 cut(s) 273, 323
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 5 cut(s) 104, 560, 867, 1142, 1296
ZrmI AGTACT 2 cut(s) 118, 437
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.