Rroxscaffold_5G00356560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000057
Physical Location & Seq
Reverse (-)
35848729 .. 35850824
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356560.1

Sequence Viewer

Length: 1107 bp
ATGCCACCTCGTCGGGCGGACGGACCACCGGATCGAAGCATCGGACCAAAGTTGGTGGAACTTCGTCCGACTCTACCATATTCATTCAATATGACAAGTAATGGAGCAGAAAACATATACCAAGAGCTGCCCGGAAGTTATTATGGGATTGACCAAGCCGGTACTCCGATTAAGATAACGACCTTGGCAAAAGAGATGCCTAGGCCAGCGGTGACTCTTCGAAGAACCGGCTACAACCCGCGTTGTGCATGTAGGAGAAGGGACGACGATCGTAAACCAAGCGGTACCCTTGCGGCTACTCGCCGGACTATGGCGATACCTCATCCTCCTCCTCCGGCCCCGAGAATACGTAAGGCACCGAAGAGAACTCGTGGCGGTTGGCCCGCAATGGAAAAGCTTTTCCGAGAAACCTTTGGGGCCATTAAGCCCGAGGTTGACTTGGCTTCACTCACTCGGATGGCCCAACGGCCTACGGAGTCCGCCGTGGCTTATCTTCGCCGCTTCCGGATTCGAAGGCCAAGCCGAACGTCGTCCCCGCCCGAGAAAGAGTTAGTCAAGCCGGCGGTTAAGGGTTTGGAACCTCATCGGCGAAGAAGCAACATGGCGGCTAAGCGAACCGAGGAAACCAACCTTGGATTTGAGCACAAAGGGCGCGAAGGAAAATCTGCCGACGATGAGATCCATGCAAAAAAGAAAGCTAAACCGGTTGGTCAAGCTTCACCGTGGTCTTATGCTCGCGATGCAAAGAAGAGTCGGAACTATCGGCCTTCTGGCCCGAAAGAAAAAGCGAATACGGAATCACCACCATCCCCAAAGGATTCCAATCTGTTCAAGAAGCCGAGAGCGGTCGCGGTTGCTCGAAACAAGAGGAGAGGGTTGCGAACAAGCACAAAGACGTTCGACCAAGCCACTATATCCCGCCTCGCTCCAACCGCCGCCATCAAAGAAGGAAGGTGGTACACCGAAGAAAAGGGGAAGGCGGTGGAAATAAGCCCTTCCAAGAAGAGGAAATTGCGGCGTAGGTTTGGGGAAGCCAAATGCGCGCTAGAGGCTTTAGATCGGGGCACGATTAAGCCTTCGCAATTGGTCAAATCACCCGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.34

Weight (kDa)

10.82

Isoelectric Point (pI)

69.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 284, 355
AccBSI CCGCTC 2 cut(s) 845, 1102
AccII CGCG 5 cut(s) 241, 654, 738, 851, 1043
AccIII TCCGGA 1 cut(s) 504
AclWI GGATC 2 cut(s) 39, 673
AfaI GTAC 3 cut(s) 163, 286, 959
AfiI CCNNNNNNNGG 2 cut(s) 310, 1005
AgeI ACCGGT 1 cut(s) 703
AgsI TTSAA 2 cut(s) 88, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 4 cut(s) 127, 397, 698, 716
AluI AGCT 4 cut(s) 127, 397, 698, 716
Alw21I GWGCWC 1 cut(s) 645
AlwI GGATC 2 cut(s) 39, 673
Ama87I CYCGRG 4 cut(s) 340, 428, 539, 1097
Aor13HI TCCGGA 1 cut(s) 504
AoxI GGCC 9 cut(s) 203, 336, 380, 417, 459, 467, 515, 764, 772
ApeKI GCWGC 1 cut(s) 127
AsiGI ACCGGT 1 cut(s) 703
Asp718I GGTACC 1 cut(s) 284
AspA2I CCTAGG 1 cut(s) 200
AspLEI GCGC 3 cut(s) 654, 1043, 1045
AspS9I GGNCC 7 cut(s) 23, 44, 337, 381, 417, 460, 773
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 223, 711, 792, 1086
AsuII TTCGAA 2 cut(s) 220, 511
AvaI CYCGRG 4 cut(s) 340, 428, 539, 1097
AvaII GGWCC 2 cut(s) 23, 44
AvrII CCTAGG 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 1067
BanI GGYRCC 2 cut(s) 284, 355
BauI CACGAG 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 1 cut(s) 114
BccI CCATC 3 cut(s) 451, 814, 947
BceAI ACGGC 2 cut(s) 467, 482
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 2 cut(s) 201, 1046
BisI GCNGC 6 cut(s) 128, 294, 499, 606, 936, 1016
BlnI CCTAGG 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 6 cut(s) 129, 295, 500, 607, 937, 1017
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 23, 44
BmeT110I CYCGRG 4 cut(s) 340, 428, 539, 1097
BmgT120I GGNCC 7 cut(s) 23, 44, 337, 381, 417, 460, 773
BmiI GGNNCC 5 cut(s) 286, 339, 357, 418, 579
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 48, 186, 730
Bpu1102I GCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 2 cut(s) 220, 511
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 7 cut(s) 183, 200, 429, 483, 618, 631, 722
BsaWI WCCGGW 3 cut(s) 28, 504, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 1005
Bse118I RCCGGY 4 cut(s) 158, 227, 559, 703
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 822
BseAI TCCGGA 1 cut(s) 504
BseDI CCNNGG 7 cut(s) 183, 200, 429, 483, 618, 631, 722
BseGI GGATG 3 cut(s) 322, 462, 806
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 310, 1005
BseMI GCAATG 1 cut(s) 393
BsePI GCGCGC 1 cut(s) 1041
BseRI GAGGAG 3 cut(s) 318, 321, 883
BseSI GKGCMC 1 cut(s) 1067
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 5 cut(s) 241, 654, 738, 851, 1043
Bsh1285I CGRYCG 2 cut(s) 271, 849
BshFI GGCC 9 cut(s) 205, 338, 382, 419, 461, 469, 517, 766, 774
BshNI GGYRCC 2 cut(s) 284, 355
BshTI ACCGGT 1 cut(s) 703
BsiEI CGRYCG 2 cut(s) 271, 849
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 4 cut(s) 340, 428, 539, 1097
BsiSI CCGG 9 cut(s) 29, 132, 159, 228, 304, 335, 505, 560, 704
BslFI GGGAC 2 cut(s) 275, 517
BslI CCNNNNNNNGG 2 cut(s) 310, 1005
BsmFI GGGAC 2 cut(s) 275, 517
BsnI GGCC 9 cut(s) 205, 338, 382, 419, 461, 469, 517, 766, 774
BsoBI CYCGRG 4 cut(s) 340, 428, 539, 1097
Bsp119I TTCGAA 2 cut(s) 220, 511
Bsp1286I GDGCHC 2 cut(s) 645, 1067
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 31, 268, 678, 1057
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp68I TCGCGA 1 cut(s) 738
BspANI GGCC 9 cut(s) 205, 338, 382, 419, 461, 469, 517, 766, 774
BspEI TCCGGA 1 cut(s) 504
BspFNI CGCG 5 cut(s) 241, 654, 738, 851, 1043
BspLI GGNNCC 5 cut(s) 286, 339, 357, 418, 579
BspPI GGATC 2 cut(s) 39, 673
BspT104I TTCGAA 2 cut(s) 220, 511
BspT107I GGYRCC 2 cut(s) 284, 355
BsrBI CCGCTC 2 cut(s) 845, 1102
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 4 cut(s) 158, 227, 559, 703
BssAI RCCGGY 4 cut(s) 158, 227, 559, 703
BssECI CCNNGG 7 cut(s) 183, 200, 429, 483, 618, 631, 722
BssHII GCGCGC 1 cut(s) 1041
BssMI GATC 4 cut(s) 31, 268, 678, 1057
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 3 cut(s) 183, 200, 631
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 723
Bst6I CTCTTC 4 cut(s) 222, 356, 743, 998
BstBAI YACGTR 1 cut(s) 350
BstBI TTCGAA 2 cut(s) 220, 511
BstC8I GCNNGC 5 cut(s) 207, 384, 561, 736, 1043
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 2 cut(s) 483, 722
BstF5I GGATG 3 cut(s) 322, 462, 806
BstFNI CGCG 5 cut(s) 241, 654, 738, 851, 1043
BstHHI GCGC 3 cut(s) 654, 1043, 1045
BstKTI GATC 4 cut(s) 34, 271, 681, 1060
BstMBI GATC 4 cut(s) 31, 268, 678, 1057
BstMCI CGRYCG 2 cut(s) 271, 849
BstMWI GCNNNNNNNGC 5 cut(s) 649, 740, 932, 1040, 1049
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 1067
BstSNI TACGTA 1 cut(s) 350
BstUI CGCG 5 cut(s) 241, 654, 738, 851, 1043
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 678
BstYI RGATCY 1 cut(s) 678
BsuRI GGCC 9 cut(s) 205, 338, 382, 419, 461, 469, 517, 766, 774
BtgI CCRYGG 2 cut(s) 483, 722
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 322, 462, 806
BtuMI TCGCGA 1 cut(s) 738
Cac8I GCNNGC 5 cut(s) 207, 384, 561, 736, 1043
CfoI GCGC 3 cut(s) 654, 1043, 1045
Cfr10I RCCGGY 4 cut(s) 158, 227, 559, 703
Cfr13I GGNCC 7 cut(s) 23, 44, 337, 381, 417, 460, 773
Csp6I GTAC 3 cut(s) 162, 285, 958
CspAI ACCGGT 1 cut(s) 703
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 3 cut(s) 249, 601, 683
CviQI GTAC 3 cut(s) 162, 285, 958
DdeI CTNAG 1 cut(s) 609
DpnI GATC 4 cut(s) 33, 270, 680, 1059
DpnII GATC 4 cut(s) 31, 268, 678, 1057
Eam1104I CTCTTC 4 cut(s) 222, 356, 743, 998
EarI CTCTTC 4 cut(s) 222, 356, 743, 998
EciI GGCGGA 2 cut(s) 32, 469
Eco105I TACGTA 1 cut(s) 350
Eco130I CCWWGG 3 cut(s) 183, 200, 631
Eco47I GGWCC 2 cut(s) 23, 44
Eco88I CYCGRG 4 cut(s) 340, 428, 539, 1097
EcoT14I CCWWGG 3 cut(s) 183, 200, 631
ErhI CCWWGG 3 cut(s) 183, 200, 631
FaeI CATG 3 cut(s) 252, 604, 686
FaqI GGGAC 2 cut(s) 275, 517
FatI CATG 3 cut(s) 248, 600, 682
FauI CCCGC 4 cut(s) 246, 391, 543, 926
Fnu4HI GCNGC 6 cut(s) 128, 294, 499, 606, 936, 1016
FokI GGATG 3 cut(s) 309, 469, 793
Fsp4HI GCNGC 6 cut(s) 128, 294, 499, 606, 936, 1016
FspBI CTAG 2 cut(s) 201, 1046
GlaI GCGC 3 cut(s) 653, 1042, 1044
GluI GCNGC 6 cut(s) 128, 294, 499, 606, 936, 1016
HaeIII GGCC 9 cut(s) 205, 338, 382, 419, 461, 469, 517, 766, 774
HapII CCGG 9 cut(s) 29, 132, 159, 228, 304, 335, 505, 560, 704
HhaI GCGC 3 cut(s) 654, 1043, 1045
Hin1II CATG 3 cut(s) 252, 604, 686
Hin6I GCGC 3 cut(s) 652, 1041, 1043
HinP1I GCGC 3 cut(s) 652, 1041, 1043
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 395, 714
HinfI GANTC 7 cut(s) 70, 214, 476, 508, 751, 797, 818
HpaII CCGG 9 cut(s) 29, 132, 159, 228, 304, 335, 505, 560, 704
HphI GGTGA 4 cut(s) 223, 711, 792, 1086
Hpy166II GTNNAC 3 cut(s) 275, 436, 960
Hpy188I TCNGA 6 cut(s) 44, 69, 168, 404, 456, 756
Hpy188III TCNNGA 3 cut(s) 505, 737, 832
Hpy8I GTNNAC 3 cut(s) 275, 436, 960
Hpy99I CGWCG 4 cut(s) 15, 269, 532, 674
HpyAV CCTTC 9 cut(s) 252, 507, 650, 777, 941, 945, 970, 1005, 1086
HpyCH4III ACNGT 1 cut(s) 723
HpyCH4IV ACGT 3 cut(s) 349, 527, 896
HpyCH4V TGCA 3 cut(s) 248, 686, 743
HpyF10VI GCNNNNNNNGC 5 cut(s) 649, 740, 932, 1040, 1049
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 3 cut(s) 349, 527, 896
Hsp92II CATG 3 cut(s) 252, 604, 686
HspAI GCGC 3 cut(s) 652, 1041, 1043
Kpn2I TCCGGA 1 cut(s) 504
KpnI GGTACC 1 cut(s) 288
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 31, 268, 678, 1057
LmnI GCTCC 2 cut(s) 104, 931
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 3 cut(s) 48, 186, 730
MaeI CTAG 2 cut(s) 201, 1046
MaeII ACGT 3 cut(s) 349, 527, 896
MaeIII GTNAC 1 cut(s) 211
MalI GATC 4 cut(s) 33, 270, 680, 1059
MbiI CCGCTC 2 cut(s) 845, 1102
MboI GATC 4 cut(s) 31, 268, 678, 1057
MboII GAAGA 8 cut(s) 209, 234, 373, 485, 603, 760, 977, 1015
MfeI CAATTG 1 cut(s) 1082
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 2 cut(s) 645, 1067
MluCI AATT 2 cut(s) 1010, 1082
MlyI GAGTC 4 cut(s) 64, 208, 485, 760
MmeI TCCRAC 3 cut(s) 92, 734, 953
MroI TCCGGA 1 cut(s) 504
MroNI GCCGGC 1 cut(s) 559
MseI TTAA 4 cut(s) 171, 423, 567, 1071
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 9 cut(s) 29, 132, 159, 228, 304, 335, 505, 560, 704
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 1082
MvnI CGCG 5 cut(s) 241, 654, 738, 851, 1043
MwoI GCNNNNNNNGC 5 cut(s) 649, 740, 932, 1040, 1049
NaeI GCCGGC 1 cut(s) 561
NciI CCSGG 1 cut(s) 132
NdeII GATC 4 cut(s) 31, 268, 678, 1057
NgoMIV GCCGGC 1 cut(s) 559
NlaIII CATG 3 cut(s) 252, 604, 686
NlaIV GGNNCC 5 cut(s) 286, 339, 357, 418, 579
NmeAIII GCCGAG 1 cut(s) 864
NmuCI GTSAC 1 cut(s) 211
NruI TCGCGA 1 cut(s) 738
NspI RCATGY 1 cut(s) 252
NspV TTCGAA 2 cut(s) 220, 511
PauI GCGCGC 1 cut(s) 1041
PdiI GCCGGC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 508, 797, 818
PinAI ACCGGT 1 cut(s) 703
PkrI GCNGC 6 cut(s) 129, 295, 500, 607, 937, 1017
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 4 cut(s) 64, 208, 484, 759
PpsI GAGTC 4 cut(s) 64, 208, 484, 759
Ppu21I YACGTR 1 cut(s) 350
PspN4I GGNNCC 5 cut(s) 286, 339, 357, 418, 579
PspPI GGNCC 7 cut(s) 23, 44, 337, 381, 417, 460, 773
PsuI RGATCY 1 cut(s) 678
PteI GCGCGC 1 cut(s) 1041
PvuI CGATCG 1 cut(s) 271
RruI TCGCGA 1 cut(s) 738
RsaI GTAC 3 cut(s) 163, 286, 959
RsaNI GTAC 3 cut(s) 162, 285, 958
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 4 cut(s) 171, 423, 567, 1071
SatI GCNGC 6 cut(s) 128, 294, 499, 606, 936, 1016
Sau3AI GATC 4 cut(s) 31, 268, 678, 1057
Sau96I GGNCC 7 cut(s) 23, 44, 337, 381, 417, 460, 773
SchI GAGTC 4 cut(s) 64, 208, 485, 760
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 645, 1067
SfaNI GCATC 3 cut(s) 48, 186, 730
SfuI TTCGAA 2 cut(s) 220, 511
SinI GGWCC 2 cut(s) 23, 44
SmiMI CAYNNNNRTG 1 cut(s) 455
SnaBI TACGTA 1 cut(s) 350
Sse9I AATT 2 cut(s) 1010, 1082
SspMI CTAG 2 cut(s) 201, 1046
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 3 cut(s) 183, 200, 631
TaaI ACNGT 1 cut(s) 723
TaiI ACGT 3 cut(s) 352, 530, 899
TaqI TCGA 5 cut(s) 34, 220, 511, 859, 900
TasI AATT 2 cut(s) 1010, 1082
TauI GCSGC 5 cut(s) 296, 501, 608, 938, 1018
TfiI GAWTC 3 cut(s) 508, 797, 818
Tru1I TTAA 4 cut(s) 171, 423, 567, 1071
Tru9I TTAA 4 cut(s) 171, 423, 567, 1071
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 3 cut(s) 36, 488, 809
VpaK11BI GGWCC 2 cut(s) 23, 44
XceI RCATGY 1 cut(s) 252
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 2 cut(s) 201, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.