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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 220 |
| AccII | CGCG | 2 cut(s) | 350, 684 |
| AciI | CCGC | 3 cut(s) | 202, 338, 350 |
| AclWI | GGATC | 1 cut(s) | 699 |
| AfaI | GTAC | 1 cut(s) | 22 |
| AflIII | ACRYGT | 1 cut(s) | 417 |
| AgsI | TTSAA | 5 cut(s) | 7, 158, 371, 617, 650 |
| AjiI | CACGTC | 1 cut(s) | 144 |
| AleI | CACNNNNGTG | 1 cut(s) | 521 |
| AluBI | AGCT | 4 cut(s) | 152, 231, 638, 676 |
| AluI | AGCT | 4 cut(s) | 152, 231, 638, 676 |
| Alw21I | GWGCWC | 1 cut(s) | 138 |
| Alw26I | GTCTC | 2 cut(s) | 41, 233 |
| AlwI | GGATC | 1 cut(s) | 699 |
| AoxI | GGCC | 1 cut(s) | 483 |
| ApeKI | GCWGC | 1 cut(s) | 638 |
| AspLEI | GCGC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuC2I | CCSGG | 1 cut(s) | 12 |
| AsuHPI | GGTGA | 2 cut(s) | 434, 505 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| Bbv12I | GWGCWC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 625 |
| BccI | CCATC | 1 cut(s) | 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 115, 149 |
| BciVI | GTATCC | 1 cut(s) | 712 |
| BclI | TGATCA | 1 cut(s) | 478 |
| BcnI | CCSGG | 1 cut(s) | 12 |
| BcoDI | GTCTC | 2 cut(s) | 41, 233 |
| BfaI | CTAG | 4 cut(s) | 33, 107, 273, 723 |
| BfmI | CTRYAG | 1 cut(s) | 519 |
| BfuI | GTATCC | 1 cut(s) | 712 |
| BisI | GCNGC | 1 cut(s) | 639 |
| BlsI | GCNGC | 1 cut(s) | 640 |
| Bme1390I | CCNGG | 1 cut(s) | 12 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgBI | CACGTC | 1 cut(s) | 144 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BmrFI | CCNGG | 1 cut(s) | 12 |
| BpmI | CTGGAG | 1 cut(s) | 310 |
| BpuMI | CCSGG | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 1 cut(s) | 456 |
| Bse1I | ACTGG | 3 cut(s) | 327, 430, 693 |
| BseDI | CCNNGG | 1 cut(s) | 456 |
| BseGI | GGATG | 1 cut(s) | 410 |
| BseMII | CTCAG | 3 cut(s) | 40, 398, 573 |
| BseNI | ACTGG | 3 cut(s) | 327, 430, 693 |
| BseXI | GCAGC | 1 cut(s) | 625 |
| BsgI | GTGCAG | 1 cut(s) | 178 |
| Bsh1236I | CGCG | 2 cut(s) | 350, 684 |
| Bsh1285I | CGRYCG | 1 cut(s) | 19 |
| BshFI | GGCC | 1 cut(s) | 485 |
| BsiEI | CGRYCG | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 1 cut(s) | 138 |
| BsiSI | CCGG | 1 cut(s) | 12 |
| BslFI | GGGAC | 1 cut(s) | 191 |
| BsmAI | GTCTC | 2 cut(s) | 41, 233 |
| BsmFI | GGGAC | 1 cut(s) | 191 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 1 cut(s) | 138 |
| Bsp143I | GATC | 2 cut(s) | 478, 691 |
| BspACI | CCGC | 3 cut(s) | 202, 338, 350 |
| BspANI | GGCC | 1 cut(s) | 485 |
| BspCNI | CTCAG | 3 cut(s) | 39, 397, 574 |
| BspFNI | CGCG | 2 cut(s) | 350, 684 |
| BspPI | GGATC | 1 cut(s) | 699 |
| BsrI | ACTGG | 3 cut(s) | 327, 430, 693 |
| BssECI | CCNNGG | 1 cut(s) | 456 |
| BssMI | GATC | 2 cut(s) | 478, 691 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 52, 244, 356, 523 |
| Bst6I | CTCTTC | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 5 cut(s) | 209, 213, 217, 487, 491 |
| BstDEI | CTNAG | 3 cut(s) | 26, 384, 582 |
| BstF5I | GGATG | 1 cut(s) | 410 |
| BstFNI | CGCG | 2 cut(s) | 350, 684 |
| BstHHI | GCGC | 1 cut(s) | 221 |
| BstKTI | GATC | 2 cut(s) | 481, 694 |
| BstMAI | GTCTC | 2 cut(s) | 41, 233 |
| BstMBI | GATC | 2 cut(s) | 478, 691 |
| BstMCI | CGRYCG | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 208 |
| BstNSI | RCATGY | 3 cut(s) | 215, 421, 713 |
| BstSCI | CCNGG | 1 cut(s) | 10 |
| BstSFI | CTRYAG | 1 cut(s) | 519 |
| BstUI | CGCG | 2 cut(s) | 350, 684 |
| BstV1I | GCAGC | 1 cut(s) | 625 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 523 |
| BsuI | GTATCC | 1 cut(s) | 712 |
| BsuRI | GGCC | 1 cut(s) | 485 |
| BtrI | CACGTC | 1 cut(s) | 144 |
| BtsCI | GGATG | 1 cut(s) | 410 |
| BtsIMutI | CAGTG | 2 cut(s) | 61, 528 |
| Cac8I | GCNNGC | 5 cut(s) | 209, 213, 217, 487, 491 |
| CfoI | GCGC | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| Csp6I | GTAC | 1 cut(s) | 21 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 136, 171 |
| CviAII | CATG | 4 cut(s) | 212, 418, 604, 710 |
| CviQI | GTAC | 1 cut(s) | 21 |
| DdeI | CTNAG | 3 cut(s) | 26, 384, 582 |
| DpnI | GATC | 2 cut(s) | 480, 693 |
| DpnII | GATC | 2 cut(s) | 478, 691 |
| Eam1104I | CTCTTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 1 cut(s) | 429 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 1 cut(s) | 90 |
| FaeI | CATG | 4 cut(s) | 215, 421, 607, 713 |
| FaiI | YATR | 6 cut(s) | 213, 318, 419, 605, 680, 711 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 529, 561 |
| FaqI | GGGAC | 1 cut(s) | 191 |
| FatI | CATG | 4 cut(s) | 211, 417, 603, 709 |
| FbaI | TGATCA | 1 cut(s) | 478 |
| Fnu4HI | GCNGC | 1 cut(s) | 639 |
| FokI | GGATG | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 1 cut(s) | 639 |
| FspBI | CTAG | 4 cut(s) | 33, 107, 273, 723 |
| FspI | TGCGCA | 1 cut(s) | 220 |
| GlaI | GCGC | 1 cut(s) | 220 |
| GluI | GCNGC | 1 cut(s) | 639 |
| GsuI | CTGGAG | 1 cut(s) | 310 |
| HaeIII | GGCC | 1 cut(s) | 485 |
| HapII | CCGG | 1 cut(s) | 12 |
| HhaI | GCGC | 1 cut(s) | 221 |
| Hin1II | CATG | 4 cut(s) | 215, 421, 607, 713 |
| Hin6I | GCGC | 1 cut(s) | 219 |
| HinP1I | GCGC | 1 cut(s) | 219 |
| HincII | GTYRAC | 2 cut(s) | 401, 423 |
| HindII | GTYRAC | 2 cut(s) | 401, 423 |
| HindIII | AAGCTT | 1 cut(s) | 674 |
| HinfI | GANTC | 4 cut(s) | 115, 382, 439, 468 |
| HpaII | CCGG | 1 cut(s) | 12 |
| HphI | GGTGA | 2 cut(s) | 434, 505 |
| Hpy166II | GTNNAC | 4 cut(s) | 147, 298, 401, 423 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 387, 555, 583 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 155 |
| Hpy8I | GTNNAC | 4 cut(s) | 147, 298, 401, 423 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 52, 244, 356, 523 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 249, 713 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 208 |
| HpyF3I | CTNAG | 3 cut(s) | 26, 384, 582 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Hsp92II | CATG | 4 cut(s) | 215, 421, 607, 713 |
| HspAI | GCGC | 1 cut(s) | 219 |
| Ksp22I | TGATCA | 1 cut(s) | 478 |
| Kzo9I | GATC | 2 cut(s) | 478, 691 |
| LmnI | GCTCC | 1 cut(s) | 572 |
| Lsp1109I | GCAGC | 1 cut(s) | 625 |
| MaeI | CTAG | 4 cut(s) | 33, 107, 273, 723 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 2 cut(s) | 329, 379 |
| MalI | GATC | 2 cut(s) | 480, 693 |
| MboI | GATC | 2 cut(s) | 478, 691 |
| MboII | GAAGA | 6 cut(s) | 124, 170, 173, 383, 446, 643 |
| MhlI | GDGCHC | 1 cut(s) | 138 |
| MluCI | AATT | 1 cut(s) | 699 |
| MlyI | GAGTC | 2 cut(s) | 376, 477 |
| MmeI | TCCRAC | 1 cut(s) | 438 |
| MnlI | CCTC | 8 cut(s) | 120, 334, 381, 451, 535, 577, 589, 709 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| MspI | CCGG | 1 cut(s) | 12 |
| MspR9I | CCNGG | 1 cut(s) | 12 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvnI | CGCG | 2 cut(s) | 350, 684 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 208 |
| NciI | CCSGG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 478, 691 |
| NlaIII | CATG | 4 cut(s) | 215, 421, 607, 713 |
| NmuCI | GTSAC | 1 cut(s) | 379 |
| NsbI | TGCGCA | 1 cut(s) | 220 |
| NspI | RCATGY | 3 cut(s) | 215, 421, 713 |
| OliI | CACNNNNGTG | 1 cut(s) | 521 |
| PaeI | GCATGC | 1 cut(s) | 215 |
| PciI | ACATGT | 1 cut(s) | 417 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PfeI | GAWTC | 2 cut(s) | 115, 439 |
| PkrI | GCNGC | 1 cut(s) | 640 |
| PleI | GAGTC | 2 cut(s) | 376, 476 |
| PpsI | GAGTC | 2 cut(s) | 376, 476 |
| PpuMI | RGGWCCY | 1 cut(s) | 90 |
| PscI | ACATGT | 1 cut(s) | 417 |
| Psp5II | RGGWCCY | 1 cut(s) | 90 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| PspPPI | RGGWCCY | 1 cut(s) | 90 |
| RsaI | GTAC | 1 cut(s) | 22 |
| RsaNI | GTAC | 1 cut(s) | 21 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SatI | GCNGC | 1 cut(s) | 639 |
| Sau3AI | GATC | 2 cut(s) | 478, 691 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| SchI | GAGTC | 2 cut(s) | 376, 477 |
| ScrFI | CCNGG | 1 cut(s) | 12 |
| SduI | GDGCHC | 1 cut(s) | 138 |
| SfcI | CTRYAG | 1 cut(s) | 519 |
| SinI | GGWCC | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SphI | GCATGC | 1 cut(s) | 215 |
| Sse9I | AATT | 1 cut(s) | 699 |
| SsiI | CCGC | 3 cut(s) | 202, 338, 350 |
| SspI | AATATT | 2 cut(s) | 475, 613 |
| SspMI | CTAG | 4 cut(s) | 33, 107, 273, 723 |
| StyD4I | CCNGG | 1 cut(s) | 10 |
| TaaI | ACNGT | 5 cut(s) | 20, 52, 244, 356, 523 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TaqI | TCGA | 1 cut(s) | 706 |
| TasI | AATT | 1 cut(s) | 699 |
| TfiI | GAWTC | 2 cut(s) | 115, 439 |
| TscAI | CASTG | 2 cut(s) | 61, 528 |
| TseFI | GTSAC | 1 cut(s) | 379 |
| TseI | GCWGC | 1 cut(s) | 638 |
| Tsp45I | GTSAC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 1 cut(s) | 538 |
| TspRI | CASTG | 2 cut(s) | 61, 528 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| XceI | RCATGY | 3 cut(s) | 215, 421, 713 |
| XspI | CTAG | 4 cut(s) | 33, 107, 273, 723 |