Rmu_sc0004283.1_g000022

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004283.1
OG0000057
Physical Location & Seq
Forward (+)
115219 .. 116674
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004283.1_g000022.1.cds

Sequence Viewer

Length: 1143 bp
atgactggccaagccgctcagagcaagcgtatctctactgacatcgccaatcagcctaagcatactgcggcagagttggcagtacttcgcaacgaggggtccaatctcgcgacccaagttgccatgcagagagctgagttggaccaggctaaggaagtgatgaataaggctttaggagatcctaacgccattcttggctcacttggacaaccttcaggtaccagcaaatacatacttcctaatgctcgggagaaaattagcggcaatacagtcacaccggctgcagccgcctctgcctcagcaacaaaaaacaaggataaagccctagtaattggtggggttagtaaggccactcaactcctgcgcaaaagagtaaaactcataagacaggggaaggcactctccttgatcttgctgcgtttacacaatacgatagtgacggggcagagaatgtctatgaagagcttccagggaattattatgaatgctcgccagaatgtggcgatacctccccttcttccgggctatgtgagacgtgaagaggttgaggagatgatcaggctagctaatcctagggcccacctagatagggtctatgagggaccgttcccgcagcgtataatgctcgcaccttttcccaaaggctataaaaatatcatattctctactttttcaggagaagatactaaggacgcggtaacccatctggccagatggttttctaaactgcgaccagggtcagtggttgattggccagccatggagaagctttttcgagagacttttggagctattgagcctgagatccagaaggccaaattgagcatgatattacctgaaagggagttggttaaattggaaatcaaaggtctggggcctcgccaacgaaagaagcaacatggcagcatgattcagtcaatgggagagcttatcacagaggtcagtagctttgagcatctcctcagagagactgacgctaggaaaaatgcgtccaaagggacatatgtgccaggaaagcaccgcacagtagcggcgctgagctaccagccgactacttatgatccttacaaccatcgtcatagtgaagaaattttccaggatgaagaagaggaagaggagactgaaggaagaacacagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

380

Amino Acids

42.28

Weight (kDa)

9.69

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 17
AccII CGCG 2 cut(s) 110, 695
AciI CCGC 8 cut(s) 15, 68, 261, 288, 611, 695, 1021, 1031
AclWI GGATC 3 cut(s) 173, 799, 1055
AcoI YGGCCR 3 cut(s) 7, 708, 752
AcsI RAATTY 1 cut(s) 1089
AcuI CTGAAG 2 cut(s) 198, 1143
AfaI GTAC 2 cut(s) 84, 220
AfiI CCNNNNNNNGG 4 cut(s) 151, 499, 520, 589
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 5 cut(s) 144, 468, 733, 1009, 1095
AluBI AGCT 8 cut(s) 134, 465, 566, 769, 791, 928, 948, 1041
AluI AGCT 8 cut(s) 134, 465, 566, 769, 791, 928, 948, 1041
Alw26I GTCTC 4 cut(s) 526, 773, 962, 1112
AlwI GGATC 3 cut(s) 173, 799, 1055
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 7 cut(s) 7, 348, 576, 708, 752, 813, 875
ApaI GGGCCC 1 cut(s) 580
ApeKI GCWGC 5 cut(s) 281, 284, 415, 613, 903
ApoI RAATTY 1 cut(s) 1089
Asp700I GAANNNNTTC 1 cut(s) 464
Asp718I GGTACC 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 2 cut(s) 366, 1036
AspS9I GGNCC 6 cut(s) 99, 142, 576, 577, 602, 875
AsuC2I CCSGG 1 cut(s) 522
AsuNHI GCTAGC 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 3 cut(s) 99, 142, 602
AvrII CCTAGG 1 cut(s) 572
BaeGI GKGCMC 1 cut(s) 580
BalI TGGCCA 3 cut(s) 9, 710, 754
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 580
BbvCI CCTCAGC 1 cut(s) 298
BbvI GCAGC 5 cut(s) 268, 296, 402, 625, 915
BccI CCATC 3 cut(s) 708, 711, 1080
BciT130I CCWGG 5 cut(s) 146, 470, 735, 1011, 1097
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 4 cut(s) 526, 773, 962, 1112
BfaI CTAG 5 cut(s) 326, 563, 573, 584, 978
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 1037
BlnI CCTAGG 1 cut(s) 572
BlpI GCTNAGC 1 cut(s) 1037
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 6 cut(s) 146, 470, 522, 735, 1011, 1097
Bme18I GGWCC 3 cut(s) 99, 142, 602
BmeT110I CYCGRG 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 6 cut(s) 99, 142, 576, 577, 602, 875
BmiI GGNNCC 5 cut(s) 100, 220, 578, 603, 876
BmrFI CCNGG 6 cut(s) 146, 470, 522, 735, 1011, 1097
BmsI GCATC 1 cut(s) 964
BmtI GCTAGC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 736
BplI GAGNNNNNCTC 2 cut(s) 363, 395
Bpu10I CCTNAGC 3 cut(s) 57, 150, 298
Bpu1102I GCTNAGC 1 cut(s) 1037
BpuMI CCSGG 1 cut(s) 522
BsaJI CCNNGG 4 cut(s) 469, 572, 734, 759
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 499, 520, 589
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 5 cut(s) 146, 470, 735, 1011, 1097
BseDI CCNNGG 4 cut(s) 469, 572, 734, 759
BseGI GGATG 1 cut(s) 1105
BseLI CCNNNNNNNGG 4 cut(s) 151, 499, 520, 589
BseMII CTCAG 6 cut(s) 32, 126, 312, 792, 976, 1028
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 3 cut(s) 563, 950, 1130
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 5 cut(s) 268, 296, 402, 625, 915
Bsh1236I CGCG 2 cut(s) 110, 695
BshFI GGCC 7 cut(s) 9, 350, 578, 710, 754, 815, 877
BshNI GGYRCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 2 cut(s) 278, 521
BslFI GGGAC 2 cut(s) 615, 1012
BslI CCNNNNNNNGG 4 cut(s) 151, 499, 520, 589
BsmAI GTCTC 4 cut(s) 526, 773, 962, 1112
BsmBI CGTCTC 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 615, 1012
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 7 cut(s) 9, 350, 578, 710, 754, 815, 877
BsoBI CYCGRG 1 cut(s) 246
Bsp120I GGGCCC 1 cut(s) 576
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 5 cut(s) 178, 408, 555, 804, 1060
Bsp1720I GCTNAGC 1 cut(s) 1037
Bsp19I CCATGG 1 cut(s) 759
Bsp68I TCGCGA 1 cut(s) 110
BspACI CCGC 8 cut(s) 15, 68, 261, 288, 611, 695, 1021, 1031
BspANI GGCC 7 cut(s) 9, 350, 578, 710, 754, 815, 877
BspCNI CTCAG 6 cut(s) 31, 127, 311, 793, 975, 1029
BspFNI CGCG 2 cut(s) 110, 695
BspLI GGNNCC 5 cut(s) 100, 220, 578, 603, 876
BspMAI CTGCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 3 cut(s) 173, 799, 1055
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 469, 572, 734, 759
BssMI GATC 5 cut(s) 178, 408, 555, 804, 1060
BssT1I CCWWGG 2 cut(s) 572, 759
Bst2UI CCWGG 5 cut(s) 146, 470, 735, 1011, 1097
Bst4CI ACNGT 3 cut(s) 271, 606, 1027
Bst6I CTCTTC 4 cut(s) 455, 534, 1101, 1107
BstC8I GCNNGC 5 cut(s) 26, 490, 564, 627, 756
BstDEI CTNAG 9 cut(s) 18, 57, 135, 150, 298, 687, 801, 962, 1037
BstDSI CCRYGG 1 cut(s) 759
BstEII GGTNACC 1 cut(s) 697
BstF5I GGATG 1 cut(s) 1105
BstFNI CGCG 2 cut(s) 110, 695
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 2 cut(s) 366, 1036
BstKTI GATC 5 cut(s) 181, 411, 558, 807, 1063
BstMAI GTCTC 4 cut(s) 526, 773, 962, 1112
BstMBI GATC 5 cut(s) 178, 408, 555, 804, 1060
BstMWI GCNNNNNNNGC 5 cut(s) 77, 287, 293, 622, 1015
BstNI CCWGG 5 cut(s) 146, 470, 735, 1011, 1097
BstPAI GACNNNNGTC 1 cut(s) 736
BstPI GGTNACC 1 cut(s) 697
BstSCI CCNGG 6 cut(s) 144, 468, 520, 733, 1009, 1095
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 2 cut(s) 110, 695
BstV1I GCAGC 5 cut(s) 268, 296, 402, 625, 915
BstX2I RGATCY 2 cut(s) 178, 804
BstYI RGATCY 2 cut(s) 178, 804
BsuRI GGCC 7 cut(s) 9, 350, 578, 710, 754, 815, 877
BtgI CCRYGG 1 cut(s) 759
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 1 cut(s) 1105
BtsIMutI CAGTG 1 cut(s) 747
BtuMI TCGCGA 1 cut(s) 110
Cac8I GCNNGC 5 cut(s) 26, 490, 564, 627, 756
CfoI GCGC 2 cut(s) 366, 1036
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 6 cut(s) 99, 142, 576, 577, 602, 875
CseI GACGC 3 cut(s) 701, 978, 983
Csp6I GTAC 2 cut(s) 83, 219
CviAII CATG 5 cut(s) 124, 760, 826, 899, 907
CviQI GTAC 2 cut(s) 83, 219
DdeI CTNAG 9 cut(s) 18, 57, 135, 150, 298, 687, 801, 962, 1037
DpnI GATC 5 cut(s) 180, 410, 557, 806, 1062
DpnII GATC 5 cut(s) 178, 408, 555, 804, 1060
EaeI YGGCCR 3 cut(s) 7, 708, 752
Eam1104I CTCTTC 4 cut(s) 455, 534, 1101, 1107
EarI CTCTTC 4 cut(s) 455, 534, 1101, 1107
Eco130I CCWWGG 2 cut(s) 572, 759
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 3 cut(s) 99, 142, 602
Eco57I CTGAAG 2 cut(s) 198, 1143
Eco88I CYCGRG 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 697
EcoO109I RGGNCCY 2 cut(s) 576, 875
EcoO65I GGTNACC 1 cut(s) 697
EcoRII CCWGG 5 cut(s) 144, 468, 733, 1009, 1095
EcoT14I CCWWGG 2 cut(s) 572, 759
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 572, 759
Esp3I CGTCTC 1 cut(s) 526
FaeI CATG 5 cut(s) 127, 763, 829, 902, 910
FaqI GGGAC 2 cut(s) 615, 1012
FatI CATG 5 cut(s) 123, 759, 825, 898, 906
FauI CCCGC 1 cut(s) 618
FauNDI CATATG 1 cut(s) 1003
FbaI TGATCA 1 cut(s) 555
FokI GGATG 1 cut(s) 1112
FriOI GRGCYC 1 cut(s) 580
FspBI CTAG 5 cut(s) 326, 563, 573, 584, 978
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 2 cut(s) 365, 1035
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 7 cut(s) 9, 350, 578, 710, 754, 815, 877
HapII CCGG 2 cut(s) 278, 521
HgaI GACGC 3 cut(s) 701, 978, 983
HhaI GCGC 2 cut(s) 366, 1036
Hin1II CATG 5 cut(s) 127, 763, 829, 902, 910
Hin6I GCGC 2 cut(s) 364, 1034
HinP1I GCGC 2 cut(s) 364, 1034
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 1 cut(s) 910
HpaII CCGG 2 cut(s) 278, 521
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 21, 965
Hpy188III TCNNGA 5 cut(s) 109, 248, 675, 776, 808
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 5 cut(s) 222, 388, 524, 805, 1118
HpyCH4III ACNGT 3 cut(s) 271, 606, 1027
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 2 cut(s) 127, 284
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 287, 293, 622, 1015
HpyF3I CTNAG 9 cut(s) 18, 57, 135, 150, 298, 687, 801, 962, 1037
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 5 cut(s) 127, 763, 829, 902, 910
HspAI GCGC 2 cut(s) 364, 1034
KpnI GGTACC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 5 cut(s) 178, 408, 555, 804, 1060
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 5 cut(s) 268, 296, 402, 625, 915
LweI GCATC 1 cut(s) 964
MaeI CTAG 5 cut(s) 326, 563, 573, 584, 978
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 3 cut(s) 271, 436, 697
MalI GATC 5 cut(s) 180, 410, 557, 806, 1062
MbiI CCGCTC 1 cut(s) 17
MboI GATC 5 cut(s) 178, 408, 555, 804, 1060
MboII GAAGA 9 cut(s) 472, 509, 551, 692, 1097, 1115, 1118, 1124, 1140
MflI RGATCY 2 cut(s) 178, 804
MhlI GDGCHC 1 cut(s) 580
MlsI TGGCCA 3 cut(s) 9, 710, 754
MluCI AATT 6 cut(s) 255, 330, 474, 818, 854, 1089
MluNI TGGCCA 3 cut(s) 9, 710, 754
MmeI TCCRAC 1 cut(s) 120
Mox20I TGGCCA 3 cut(s) 9, 710, 754
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 3 cut(s) 9, 710, 754
MseI TTAA 1 cut(s) 852
Msp20I TGGCCA 3 cut(s) 9, 710, 754
MspI CCGG 2 cut(s) 278, 521
MspR9I CCNGG 6 cut(s) 146, 470, 522, 735, 1011, 1097
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 5 cut(s) 146, 470, 735, 1011, 1097
MvnI CGCG 2 cut(s) 110, 695
MwoI GCNNNNNNNGC 5 cut(s) 77, 287, 293, 622, 1015
NciI CCSGG 1 cut(s) 522
NcoI CCATGG 1 cut(s) 759
NdeI CATATG 1 cut(s) 1003
NdeII GATC 5 cut(s) 178, 408, 555, 804, 1060
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 5 cut(s) 127, 763, 829, 902, 910
NlaIV GGNNCC 5 cut(s) 100, 220, 578, 603, 876
NmuCI GTSAC 2 cut(s) 271, 436
NruI TCGCGA 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 455
PctI GAATGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 910
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 1095
PshAI GACNNNNGTC 1 cut(s) 736
Psp6I CCWGG 5 cut(s) 144, 468, 733, 1009, 1095
PspEI GGTNACC 1 cut(s) 697
PspGI CCWGG 5 cut(s) 144, 468, 733, 1009, 1095
PspN4I GGNNCC 5 cut(s) 100, 220, 578, 603, 876
PspOMI GGGCCC 1 cut(s) 576
PspPI GGNCC 6 cut(s) 99, 142, 576, 577, 602, 875
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 178, 804
RruI TCGCGA 1 cut(s) 110
RsaI GTAC 2 cut(s) 84, 220
RsaNI GTAC 2 cut(s) 83, 219
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 852
Sau3AI GATC 5 cut(s) 178, 408, 555, 804, 1060
Sau96I GGNCC 6 cut(s) 99, 142, 576, 577, 602, 875
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 6 cut(s) 146, 470, 522, 735, 1011, 1097
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 1 cut(s) 964
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 3 cut(s) 99, 142, 602
Sse9I AATT 6 cut(s) 255, 330, 474, 818, 854, 1089
SsiI CCGC 8 cut(s) 15, 68, 261, 288, 611, 695, 1021, 1031
SspMI CTAG 5 cut(s) 326, 563, 573, 584, 978
StyD4I CCNGG 6 cut(s) 144, 468, 520, 733, 1009, 1095
StyI CCWWGG 2 cut(s) 572, 759
TaaI ACNGT 3 cut(s) 271, 606, 1027
TaiI ACGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 775
TasI AATT 6 cut(s) 255, 330, 474, 818, 854, 1089
TatI WGTACW 1 cut(s) 82
TauI GCSGC 5 cut(s) 17, 71, 264, 290, 1034
TfiI GAWTC 1 cut(s) 910
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 2 cut(s) 271, 436
TseI GCWGC 5 cut(s) 281, 284, 415, 613, 903
Tsp45I GTSAC 2 cut(s) 271, 436
TspDTI ATGAA 4 cut(s) 176, 473, 497, 1116
TspRI CASTG 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 3 cut(s) 99, 142, 602
XapI RAATTY 1 cut(s) 1089
XmaJI CCTAGG 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 5 cut(s) 326, 563, 573, 584, 978
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.