Rroxscaffold_4G00331220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000057
Physical Location & Seq
Forward (+)
65093025 .. 65094784
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331220.1

Sequence Viewer

Length: 1221 bp
ATGGAGAATATCGAAAATCATCGCAAGAAGATAGCTGCTGATTTTGAAAGGGAAACGGCGAAACAACAAATCACACAATCGAGAGAATGCAATGAGGGCTCATGCCACGGTATTGCTAATGAGCGAATCAGCGCCGAAAGAAATCATGGAGGCTATCACGAACCAAACCAAGAAGATTGCGTCGGATATGGCGGTCTTCGCAAGGATGGCGCTAACCTCGCCGCCGAGGTGGCCATGCAGAGAGCCGAATTGAACCGAGCAGAAGTGTTGAACAAAGCTTTAGGGGATCCTAACGCTATCCTTGGCTCCCTTGGCCAGCCGTCCGGTTCGGGTAAATACGTACCGCCGAATCGGCGAGAGAAGATCGAAGCATCGTGCCAAAGTTGGTGGAACTTCGTCGACTCTACCACATTCATTCAATGCGACGGTGATGAAGCGAGAAAACATATACCAAGAACTGCCGGAAGCTATTATGGGATTGACCAAGGCGGTAACTCGATTAAGATAACGGCCTTGGCAAAAGAGATGCCTAGGCCATCGGTGACTCTTCGAAGAACCAGCTACAACCCGCGTTGTACATGTAGGAGAAGGGACGGCGATCGTAAACTAGCAATACCCTTGCGGTCGCTCGCCATACGTGGCGATACCCCCTCCTCCTCCTCCGTGCCCGAATATGTAAGGCTTGAAGAGGTTGAGGAGATGATCGAGCGGCTAATCCTAGGGCCCAAATGGATGGGGTCTATGAGGGACCTTTCCCGCGCATATAATGCTCGCGCCTTTCCTGGGAAAGAGTTAGTCAAGGCTGAGGTCAAGGGTTTGGAACCTCGTCGGCGAAAGAAGCAACATGGCGGCATGATCCGGTCGATGGGAGAACTCATCACAAAGGTGGGCAGCTTTGAACATCTCCTCGCAGAAACCGACGCAAGGAAGAATGCGTCCAAAGGGACATATGTACCAGGAAAACATCGCACCGTAGTGGCCCTAAGCTACCAGCCGACTACTTATGACCATTACTACCGTCACCACGGTGAAGAAGTGGTTCGGGATGATGATGAGGAAGAGGAGAGTGATATCGCCGCTTATGAACCGACCGGGATGAAGGATCCACCAAGCAACCGAAAATTTCCAAGGAACCCGTCAAGCTCATATCGATGGCCTTTACCAAACCCGATTTCGCGACATATACATATGATGCCAATAAGGCACATGAGATTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.87

Weight (kDa)

9.09

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 709
AccI GTMKAC 1 cut(s) 399
AccII CGCG 4 cut(s) 571, 759, 774, 1177
AclWI GGATC 5 cut(s) 281, 294, 850, 1097, 1110
AcoI YGGCCR 2 cut(s) 231, 313
AcsI RAATTY 1 cut(s) 1121
AfaI GTAC 3 cut(s) 342, 577, 954
AfiI CCNNNNNNNGG 3 cut(s) 783, 865, 924
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 6 cut(s) 47, 253, 271, 419, 686, 899
AjnI CCWGG 2 cut(s) 781, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AleI CACNNNNGTG 3 cut(s) 884, 974, 1026
AluBI AGCT 7 cut(s) 35, 278, 468, 561, 894, 987, 1143
AluI AGCT 7 cut(s) 35, 278, 468, 561, 894, 987, 1143
AlwI GGATC 5 cut(s) 281, 294, 850, 1097, 1110
AoxI GGCC 7 cut(s) 231, 313, 510, 533, 722, 978, 1154
ApaI GGGCCC 1 cut(s) 726
ApeKI GCWGC 2 cut(s) 35, 891
ApoI RAATTY 1 cut(s) 1121
Asp700I GAANNNNTTC 1 cut(s) 1038
AspA2I CCTAGG 2 cut(s) 530, 718
AspLEI GCGC 4 cut(s) 134, 212, 761, 776
AspS9I GGNCC 4 cut(s) 722, 723, 748, 979
AsuC2I CCSGG 1 cut(s) 1093
AsuHPI GGTGA 4 cut(s) 440, 553, 1013, 1040
AsuII TTCGAA 1 cut(s) 550
AvaII GGWCC 1 cut(s) 748
AvrII CCTAGG 2 cut(s) 530, 718
BaeGI GKGCMC 2 cut(s) 669, 726
BaeI ACNNNNGTAYC 2 cut(s) 936, 969
BalI TGGCCA 2 cut(s) 233, 315
BamHI GGATCC 2 cut(s) 286, 1102
BanII GRGCYC 2 cut(s) 101, 726
BbsI GAAGAC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 2 cut(s) 22, 903
BccI CCATC 5 cut(s) 200, 544, 727, 859, 1146
BceAI ACGGC 4 cut(s) 72, 304, 525, 610
BciT130I CCWGG 2 cut(s) 783, 957
BcnI CCSGG 1 cut(s) 1093
BfaI CTAG 3 cut(s) 531, 608, 719
BfoI RGCGCY 2 cut(s) 135, 213
BglI GCCNNNNNGGC 3 cut(s) 230, 352, 1201
BisI GCNGC 6 cut(s) 36, 222, 710, 850, 892, 1077
BlnI CCTAGG 2 cut(s) 530, 718
BlsI GCNGC 6 cut(s) 37, 223, 711, 851, 893, 1078
Bme1390I CCNGG 3 cut(s) 783, 957, 1093
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 4 cut(s) 722, 723, 748, 979
BmiI GGNNCC 7 cut(s) 288, 307, 724, 749, 822, 1104, 1133
BmrFI CCNGG 3 cut(s) 783, 957, 1093
BmsI GCATC 3 cut(s) 380, 516, 1182
BpiI GAAGAC 1 cut(s) 188
Bpu10I CCTNAGC 2 cut(s) 804, 983
Bpu14I TTCGAA 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 1093
Bsa29I ATCGAT 1 cut(s) 1150
BsaAI YACGTR 2 cut(s) 340, 638
BsaWI WCCGGW 2 cut(s) 323, 858
Bsc4I CCNNNNNNNGG 3 cut(s) 783, 865, 924
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 783, 957
BseCI ATCGAT 1 cut(s) 1150
BseGI GGATG 4 cut(s) 211, 738, 1051, 1101
BseLI CCNNNNNNNGG 3 cut(s) 783, 865, 924
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 795
BseRI GAGGAG 6 cut(s) 643, 646, 649, 710, 896, 1076
BseSI GKGCMC 2 cut(s) 669, 726
BseXI GCAGC 2 cut(s) 22, 903
Bsh1236I CGCG 4 cut(s) 571, 759, 774, 1177
Bsh1285I CGRYCG 4 cut(s) 601, 626, 863, 1092
BshFI GGCC 7 cut(s) 233, 315, 512, 535, 724, 980, 1156
BshVI ATCGAT 1 cut(s) 1150
BsiEI CGRYCG 4 cut(s) 601, 626, 863, 1092
BsiSI CCGG 4 cut(s) 324, 462, 859, 1092
BslFI GGGAC 3 cut(s) 605, 761, 958
BslI CCNNNNNNNGG 3 cut(s) 783, 865, 924
BsmFI GGGAC 3 cut(s) 605, 761, 958
BsmI GAATGC 2 cut(s) 92, 937
BsnI GGCC 7 cut(s) 233, 315, 512, 535, 724, 980, 1156
Bsp119I TTCGAA 1 cut(s) 550
Bsp120I GGGCCC 1 cut(s) 722
Bsp1286I GDGCHC 3 cut(s) 101, 669, 726
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
Bsp68I TCGCGA 1 cut(s) 1177
BspANI GGCC 7 cut(s) 233, 315, 512, 535, 724, 980, 1156
BspCNI CTCAG 1 cut(s) 796
BspDI ATCGAT 1 cut(s) 1150
BspFNI CGCG 4 cut(s) 571, 759, 774, 1177
BspLI GGNNCC 7 cut(s) 288, 307, 724, 749, 822, 1104, 1133
BspPI GGATC 5 cut(s) 281, 294, 850, 1097, 1110
BspT104I TTCGAA 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 575
BssMI GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
BssT1I CCWWGG 7 cut(s) 301, 310, 484, 513, 530, 718, 1127
Bst2UI CCWGG 2 cut(s) 783, 957
Bst4CI ACNGT 5 cut(s) 110, 428, 973, 1019, 1028
Bst6I CTCTTC 3 cut(s) 552, 681, 1053
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 575
BstBAI YACGTR 2 cut(s) 340, 638
BstBI TTCGAA 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 317, 630, 772
BstDEI CTNAG 2 cut(s) 804, 983
BstDSI CCRYGG 2 cut(s) 106, 1024
BstF5I GGATG 4 cut(s) 211, 738, 1051, 1101
BstFNI CGCG 4 cut(s) 571, 759, 774, 1177
BstH2I RGCGCY 2 cut(s) 135, 213
BstHHI GCGC 4 cut(s) 134, 212, 761, 776
BstKTI GATC 6 cut(s) 289, 366, 601, 705, 858, 1105
BstMBI GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
BstMCI CGRYCG 4 cut(s) 601, 626, 863, 1092
BstNI CCWGG 2 cut(s) 783, 957
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 3 cut(s) 781, 955, 1091
BstSLI GKGCMC 2 cut(s) 669, 726
BstSNI TACGTA 1 cut(s) 340
BstUI CGCG 4 cut(s) 571, 759, 774, 1177
BstV1I GCAGC 2 cut(s) 22, 903
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 286, 1102
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 2 cut(s) 286, 1102
Bsu15I ATCGAT 1 cut(s) 1150
BsuRI GGCC 7 cut(s) 233, 315, 512, 535, 724, 980, 1156
BsuTUI ATCGAT 1 cut(s) 1150
BtgI CCRYGG 2 cut(s) 106, 1024
BtgZI GCGATG 2 cut(s) 5, 950
BtsCI GGATG 4 cut(s) 211, 738, 1051, 1101
BtuMI TCGCGA 1 cut(s) 1177
Cac8I GCNNGC 3 cut(s) 317, 630, 772
CfoI GCGC 4 cut(s) 134, 212, 761, 776
Cfr13I GGNCC 4 cut(s) 722, 723, 748, 979
ClaI ATCGAT 1 cut(s) 1150
CseI GACGC 3 cut(s) 169, 924, 929
Csp6I GTAC 3 cut(s) 341, 576, 953
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CviAII CATG 7 cut(s) 102, 146, 235, 579, 845, 853, 1207
CviQI GTAC 3 cut(s) 341, 576, 953
DdeI CTNAG 2 cut(s) 804, 983
DpnI GATC 6 cut(s) 288, 365, 600, 704, 857, 1104
DpnII GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
EaeI YGGCCR 2 cut(s) 231, 313
Eam1104I CTCTTC 3 cut(s) 552, 681, 1053
EarI CTCTTC 3 cut(s) 552, 681, 1053
Eco105I TACGTA 1 cut(s) 340
Eco130I CCWWGG 7 cut(s) 301, 310, 484, 513, 530, 718, 1127
Eco24I GRGCYC 2 cut(s) 101, 726
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 748
EcoO109I RGGNCCY 2 cut(s) 722, 748
EcoRII CCWGG 2 cut(s) 781, 955
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 7 cut(s) 301, 310, 484, 513, 530, 718, 1127
EcoT38I GRGCYC 2 cut(s) 101, 726
ErhI CCWWGG 7 cut(s) 301, 310, 484, 513, 530, 718, 1127
FaeI CATG 7 cut(s) 105, 149, 238, 582, 848, 856, 1210
FaqI GGGAC 3 cut(s) 605, 761, 958
FatI CATG 7 cut(s) 101, 145, 234, 578, 844, 852, 1206
FauI CCCGC 2 cut(s) 576, 764
FauNDI CATATG 2 cut(s) 949, 1188
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 6 cut(s) 36, 222, 710, 850, 892, 1077
FokI GGATG 4 cut(s) 218, 745, 1058, 1108
FriOI GRGCYC 2 cut(s) 101, 726
Fsp4HI GCNGC 6 cut(s) 36, 222, 710, 850, 892, 1077
FspBI CTAG 3 cut(s) 531, 608, 719
GlaI GCGC 4 cut(s) 133, 211, 760, 775
GluI GCNGC 6 cut(s) 36, 222, 710, 850, 892, 1077
HaeII RGCGCY 2 cut(s) 135, 213
HaeIII GGCC 7 cut(s) 233, 315, 512, 535, 724, 980, 1156
HapII CCGG 4 cut(s) 324, 462, 859, 1092
HgaI GACGC 3 cut(s) 169, 924, 929
HhaI GCGC 4 cut(s) 134, 212, 761, 776
Hin1II CATG 7 cut(s) 105, 149, 238, 582, 848, 856, 1210
Hin6I GCGC 4 cut(s) 132, 210, 759, 774
HinP1I GCGC 4 cut(s) 132, 210, 759, 774
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 5 cut(s) 126, 349, 401, 544, 1212
HpaII CCGG 4 cut(s) 324, 462, 859, 1092
HphI GGTGA 4 cut(s) 440, 553, 1013, 1040
Hpy166II GTNNAC 2 cut(s) 400, 605
Hpy188I TCNGA 2 cut(s) 185, 1217
Hpy188III TCNNGA 4 cut(s) 81, 158, 1043, 1176
Hpy8I GTNNAC 2 cut(s) 400, 605
Hpy99I CGWCG 5 cut(s) 185, 401, 428, 831, 923
HpyAV CCTTC 2 cut(s) 582, 1093
HpyCH4III ACNGT 5 cut(s) 110, 428, 973, 1019, 1028
HpyCH4IV ACGT 2 cut(s) 339, 637
HpyCH4V TGCA 2 cut(s) 90, 238
HpyF3I CTNAG 2 cut(s) 804, 983
HpySE526I ACGT 2 cut(s) 339, 637
Hsp92II CATG 7 cut(s) 105, 149, 238, 582, 848, 856, 1210
HspAI GCGC 4 cut(s) 132, 210, 759, 774
Kzo9I GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 22, 903
LweI GCATC 3 cut(s) 380, 516, 1182
MaeI CTAG 3 cut(s) 531, 608, 719
MaeII ACGT 2 cut(s) 339, 637
MaeIII GTNAC 3 cut(s) 491, 541, 1019
MalI GATC 6 cut(s) 288, 365, 600, 704, 857, 1104
MbiI CCGCTC 1 cut(s) 709
MboI GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
MflI RGATCY 2 cut(s) 286, 1102
MhlI GDGCHC 3 cut(s) 101, 669, 726
MlsI TGGCCA 2 cut(s) 233, 315
MluCI AATT 2 cut(s) 248, 1121
MluNI TGGCCA 2 cut(s) 233, 315
MlyI GAGTC 2 cut(s) 395, 538
MmeI TCCRAC 1 cut(s) 163
Mox20I TGGCCA 2 cut(s) 233, 315
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 2 cut(s) 233, 315
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 4 cut(s) 884, 974, 1026, 1150
Msp20I TGGCCA 2 cut(s) 233, 315
MspI CCGG 4 cut(s) 324, 462, 859, 1092
MspR9I CCNGG 3 cut(s) 783, 957, 1093
Mva1269I GAATGC 2 cut(s) 92, 937
MvaI CCWGG 2 cut(s) 783, 957
MvnI CGCG 4 cut(s) 571, 759, 774, 1177
NciI CCSGG 1 cut(s) 1093
NdeI CATATG 2 cut(s) 949, 1188
NdeII GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
NlaIII CATG 7 cut(s) 105, 149, 238, 582, 848, 856, 1210
NlaIV GGNNCC 7 cut(s) 288, 307, 724, 749, 822, 1104, 1133
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 541, 1019
NruI TCGCGA 1 cut(s) 1177
NspI RCATGY 1 cut(s) 582
NspV TTCGAA 1 cut(s) 550
OliI CACNNNNGTG 3 cut(s) 884, 974, 1026
PciI ACATGT 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 2 cut(s) 92, 937
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 3 cut(s) 126, 349, 1212
PkrI GCNGC 6 cut(s) 37, 223, 711, 851, 893, 1078
Ple19I CGATCG 1 cut(s) 601
PleI GAGTC 2 cut(s) 395, 538
PpsI GAGTC 2 cut(s) 395, 538
Ppu21I YACGTR 2 cut(s) 340, 638
PpuMI RGGWCCY 1 cut(s) 748
PscI ACATGT 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 2 cut(s) 781, 955
PspGI CCWGG 2 cut(s) 781, 955
PspN4I GGNNCC 7 cut(s) 288, 307, 724, 749, 822, 1104, 1133
PspOMI GGGCCC 1 cut(s) 722
PspPI GGNCC 4 cut(s) 722, 723, 748, 979
PspPPI RGGWCCY 1 cut(s) 748
PsuI RGATCY 2 cut(s) 286, 1102
PvuI CGATCG 1 cut(s) 601
RruI TCGCGA 1 cut(s) 1177
RsaI GTAC 3 cut(s) 342, 577, 954
RsaNI GTAC 3 cut(s) 341, 576, 953
RseI CAYNNNNRTG 4 cut(s) 884, 974, 1026, 1150
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 6 cut(s) 36, 222, 710, 850, 892, 1077
Sau3AI GATC 6 cut(s) 286, 363, 598, 702, 855, 1102
Sau96I GGNCC 4 cut(s) 722, 723, 748, 979
SchI GAGTC 2 cut(s) 395, 538
ScrFI CCNGG 3 cut(s) 783, 957, 1093
SduI GDGCHC 3 cut(s) 101, 669, 726
SfaNI GCATC 3 cut(s) 380, 516, 1182
SfuI TTCGAA 1 cut(s) 550
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 4 cut(s) 884, 974, 1026, 1150
SnaBI TACGTA 1 cut(s) 340
Sse9I AATT 2 cut(s) 248, 1121
SspMI CTAG 3 cut(s) 531, 608, 719
StyD4I CCNGG 3 cut(s) 781, 955, 1091
StyI CCWWGG 7 cut(s) 301, 310, 484, 513, 530, 718, 1127
TaaI ACNGT 5 cut(s) 110, 428, 973, 1019, 1028
TaiI ACGT 2 cut(s) 342, 640
TaqI TCGA 9 cut(s) 12, 80, 366, 399, 497, 550, 705, 863, 1150
TasI AATT 2 cut(s) 248, 1121
TatI WGTACW 1 cut(s) 575
TauI GCSGC 4 cut(s) 224, 712, 852, 1079
TfiI GAWTC 3 cut(s) 126, 349, 1212
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseFI GTSAC 2 cut(s) 541, 1019
TseI GCWGC 2 cut(s) 35, 891
Tsp45I GTSAC 2 cut(s) 541, 1019
TspDTI ATGAA 4 cut(s) 403, 447, 1098, 1112
TspGWI ACGGA 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 1 cut(s) 1121
XceI RCATGY 1 cut(s) 582
XmaJI CCTAGG 2 cut(s) 530, 718
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 3 cut(s) 531, 608, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.