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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 114 |
| AccI | GTMKAC | 1 cut(s) | 825 |
| AccII | CGCG | 1 cut(s) | 360 |
| AciI | CCGC | 1 cut(s) | 537 |
| AcoI | YGGCCR | 2 cut(s) | 852, 939 |
| AcsI | RAATTY | 1 cut(s) | 976 |
| AcuI | CTGAAG | 1 cut(s) | 215 |
| AdeI | CACNNNGTG | 1 cut(s) | 578 |
| AfaI | GTAC | 2 cut(s) | 353, 916 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 162, 676, 763 |
| AflIII | ACRYGT | 1 cut(s) | 45 |
| AgsI | TTSAA | 8 cut(s) | 43, 217, 380, 502, 812, 883, 896, 976 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 23 |
| AjnI | CCWGG | 3 cut(s) | 32, 271, 1016 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 267, 299, 482, 514 |
| AluBI | AGCT | 1 cut(s) | 323 |
| AluI | AGCT | 1 cut(s) | 323 |
| Alw26I | GTCTC | 4 cut(s) | 233, 401, 457, 545 |
| Ama87I | CYCGRG | 1 cut(s) | 634 |
| AoxI | GGCC | 3 cut(s) | 164, 852, 939 |
| ApeKI | GCWGC | 2 cut(s) | 426, 623 |
| ApoI | RAATTY | 1 cut(s) | 976 |
| AseI | ATTAAT | 1 cut(s) | 494 |
| AsuC2I | CCSGG | 2 cut(s) | 635, 636 |
| AsuHPI | GGTGA | 3 cut(s) | 196, 214, 731 |
| AvaI | CYCGRG | 1 cut(s) | 634 |
| BalI | TGGCCA | 1 cut(s) | 854 |
| BauI | CACGAG | 1 cut(s) | 576 |
| BbsI | GAAGAC | 2 cut(s) | 22, 194 |
| BbvI | GCAGC | 2 cut(s) | 438, 635 |
| BccI | CCATC | 1 cut(s) | 985 |
| BciT130I | CCWGG | 3 cut(s) | 34, 273, 1018 |
| BcnI | CCSGG | 2 cut(s) | 635, 636 |
| BcoDI | GTCTC | 4 cut(s) | 233, 401, 457, 545 |
| BfaI | CTAG | 1 cut(s) | 671 |
| BisI | GCNGC | 3 cut(s) | 427, 537, 624 |
| BlsI | GCNGC | 3 cut(s) | 428, 538, 625 |
| Bme1390I | CCNGG | 5 cut(s) | 34, 273, 635, 636, 1018 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 23 |
| BmeT110I | CYCGRG | 1 cut(s) | 634 |
| BmiI | GGNNCC | 1 cut(s) | 768 |
| BmrFI | CCNGG | 5 cut(s) | 34, 273, 635, 636, 1018 |
| BmsI | GCATC | 1 cut(s) | 697 |
| BoxI | GACNNNNGTC | 1 cut(s) | 862 |
| BpiI | GAAGAC | 2 cut(s) | 22, 194 |
| BpmI | CTGGAG | 2 cut(s) | 279, 303 |
| BpuEI | CTTGAG | 2 cut(s) | 152, 950 |
| BpuMI | CCSGG | 2 cut(s) | 635, 636 |
| BsaI | GGTCTC | 2 cut(s) | 457, 545 |
| BsaJI | CCNNGG | 4 cut(s) | 447, 633, 634, 942 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 162, 676, 763 |
| Bse1I | ACTGG | 2 cut(s) | 225, 262 |
| BseBI | CCWGG | 3 cut(s) | 34, 273, 1018 |
| BseDI | CCNNGG | 4 cut(s) | 447, 633, 634, 942 |
| BseGI | GGATG | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 162, 676, 763 |
| BseMII | CTCAG | 2 cut(s) | 728, 978 |
| BseNI | ACTGG | 2 cut(s) | 225, 262 |
| BseRI | GAGGAG | 1 cut(s) | 914 |
| BseXI | GCAGC | 2 cut(s) | 438, 635 |
| Bsh1236I | CGCG | 1 cut(s) | 360 |
| BshFI | GGCC | 3 cut(s) | 166, 854, 941 |
| BsiHKCI | CYCGRG | 1 cut(s) | 634 |
| BsiSI | CCGG | 1 cut(s) | 635 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 162, 676, 763 |
| BsmAI | GTCTC | 4 cut(s) | 233, 401, 457, 545 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsnI | GGCC | 3 cut(s) | 166, 854, 941 |
| Bso31I | GGTCTC | 2 cut(s) | 457, 545 |
| BsoBI | CYCGRG | 1 cut(s) | 634 |
| Bsp19I | CCATGG | 1 cut(s) | 942 |
| Bsp68I | TCGCGA | 1 cut(s) | 360 |
| BspACI | CCGC | 1 cut(s) | 537 |
| BspANI | GGCC | 3 cut(s) | 166, 854, 941 |
| BspCNI | CTCAG | 2 cut(s) | 727, 979 |
| BspFNI | CGCG | 1 cut(s) | 360 |
| BspLI | GGNNCC | 1 cut(s) | 768 |
| BspQI | GCTCTTC | 1 cut(s) | 654 |
| BspTNI | GGTCTC | 2 cut(s) | 457, 545 |
| BsrI | ACTGG | 2 cut(s) | 225, 262 |
| BssECI | CCNNGG | 4 cut(s) | 447, 633, 634, 942 |
| BssSI | CACGAG | 1 cut(s) | 576 |
| BssT1I | CCWWGG | 2 cut(s) | 447, 942 |
| Bst2BI | CACGAG | 1 cut(s) | 576 |
| Bst2UI | CCWGG | 3 cut(s) | 34, 273, 1018 |
| Bst4CI | ACNGT | 3 cut(s) | 334, 376, 743 |
| Bst6I | CTCTTC | 2 cut(s) | 654, 891 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 846 |
| BstDEI | CTNAG | 2 cut(s) | 714, 987 |
| BstDSI | CCRYGG | 1 cut(s) | 942 |
| BstF5I | GGATG | 1 cut(s) | 246 |
| BstFNI | CGCG | 1 cut(s) | 360 |
| BstMAI | GTCTC | 4 cut(s) | 233, 401, 457, 545 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 125 |
| BstNI | CCWGG | 3 cut(s) | 34, 273, 1018 |
| BstNSI | RCATGY | 3 cut(s) | 49, 751, 848 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 862 |
| BstSCI | CCNGG | 5 cut(s) | 32, 271, 633, 634, 1016 |
| BstUI | CGCG | 1 cut(s) | 360 |
| BstV1I | GCAGC | 2 cut(s) | 438, 635 |
| BstV2I | GAAGAC | 2 cut(s) | 22, 194 |
| BsuRI | GGCC | 3 cut(s) | 166, 854, 941 |
| BtgI | CCRYGG | 1 cut(s) | 942 |
| BtsCI | GGATG | 1 cut(s) | 246 |
| BtuMI | TCGCGA | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 846 |
| Cfr9I | CCCGGG | 1 cut(s) | 634 |
| CseI | GACGC | 1 cut(s) | 418 |
| CsiI | ACCWGGT | 1 cut(s) | 1016 |
| Csp6I | GTAC | 2 cut(s) | 352, 915 |
| CviAII | CATG | 8 cut(s) | 46, 348, 748, 820, 845, 886, 943, 1000 |
| CviQI | GTAC | 2 cut(s) | 352, 915 |
| DdeI | CTNAG | 2 cut(s) | 714, 987 |
| DraIII | CACNNNGTG | 1 cut(s) | 578 |
| DriI | GACNNNNNGTC | 1 cut(s) | 23 |
| EaeI | YGGCCR | 2 cut(s) | 852, 939 |
| Eam1104I | CTCTTC | 2 cut(s) | 654, 891 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 2 cut(s) | 654, 891 |
| Eco130I | CCWWGG | 2 cut(s) | 447, 942 |
| Eco31I | GGTCTC | 2 cut(s) | 457, 545 |
| Eco57I | CTGAAG | 1 cut(s) | 215 |
| Eco88I | CYCGRG | 1 cut(s) | 634 |
| EcoRII | CCWGG | 3 cut(s) | 32, 271, 1016 |
| EcoT14I | CCWWGG | 2 cut(s) | 447, 942 |
| ErhI | CCWWGG | 2 cut(s) | 447, 942 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FaeI | CATG | 8 cut(s) | 49, 351, 751, 823, 848, 889, 946, 1003 |
| FatI | CATG | 8 cut(s) | 45, 347, 747, 819, 844, 885, 942, 999 |
| FblI | GTMKAC | 1 cut(s) | 825 |
| Fnu4HI | GCNGC | 3 cut(s) | 427, 537, 624 |
| FokI | GGATG | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 3 cut(s) | 427, 537, 624 |
| FspBI | CTAG | 1 cut(s) | 671 |
| GluI | GCNGC | 3 cut(s) | 427, 537, 624 |
| GsuI | CTGGAG | 2 cut(s) | 279, 303 |
| HaeIII | GGCC | 3 cut(s) | 166, 854, 941 |
| HapII | CCGG | 1 cut(s) | 635 |
| HgaI | GACGC | 1 cut(s) | 418 |
| Hin1II | CATG | 8 cut(s) | 49, 351, 751, 823, 848, 889, 946, 1003 |
| HincII | GTYRAC | 2 cut(s) | 476, 603 |
| HindII | GTYRAC | 2 cut(s) | 476, 603 |
| HinfI | GANTC | 6 cut(s) | 56, 101, 190, 221, 421, 775 |
| HpaII | CCGG | 1 cut(s) | 635 |
| HphI | GGTGA | 3 cut(s) | 196, 214, 731 |
| Hpy166II | GTNNAC | 5 cut(s) | 205, 476, 603, 739, 826 |
| Hpy188I | TCNGA | 3 cut(s) | 195, 550, 610 |
| Hpy188III | TCNNGA | 5 cut(s) | 131, 359, 578, 779, 880 |
| Hpy8I | GTNNAC | 5 cut(s) | 205, 476, 603, 739, 826 |
| HpyAV | CCTTC | 5 cut(s) | 190, 363, 464, 517, 719 |
| HpyCH4III | ACNGT | 3 cut(s) | 334, 376, 743 |
| HpyCH4IV | ACGT | 1 cut(s) | 354 |
| HpyCH4V | TGCA | 2 cut(s) | 520, 710 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 125 |
| HpyF3I | CTNAG | 2 cut(s) | 714, 987 |
| HpySE526I | ACGT | 1 cut(s) | 354 |
| Hsp92II | CATG | 8 cut(s) | 49, 351, 751, 823, 848, 889, 946, 1003 |
| LguI | GCTCTTC | 1 cut(s) | 654 |
| Lsp1109I | GCAGC | 2 cut(s) | 438, 635 |
| LweI | GCATC | 1 cut(s) | 697 |
| MabI | ACCWGGT | 1 cut(s) | 1016 |
| MaeI | CTAG | 1 cut(s) | 671 |
| MaeII | ACGT | 1 cut(s) | 354 |
| MaeIII | GTNAC | 2 cut(s) | 458, 743 |
| MboII | GAAGA | 9 cut(s) | 27, 199, 353, 537, 656, 671, 734, 908, 963 |
| MlsI | TGGCCA | 1 cut(s) | 854 |
| MluCI | AATT | 3 cut(s) | 491, 786, 976 |
| MluNI | TGGCCA | 1 cut(s) | 854 |
| MlyI | GAGTC | 2 cut(s) | 65, 184 |
| Mox20I | TGGCCA | 1 cut(s) | 854 |
| MscI | TGGCCA | 1 cut(s) | 854 |
| MseI | TTAA | 2 cut(s) | 234, 494 |
| MslI | CAYNNNNRTG | 1 cut(s) | 465 |
| Msp20I | TGGCCA | 1 cut(s) | 854 |
| MspI | CCGG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 5 cut(s) | 34, 273, 635, 636, 1018 |
| MvaI | CCWGG | 3 cut(s) | 34, 273, 1018 |
| MvnI | CGCG | 1 cut(s) | 360 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 125 |
| NciI | CCSGG | 2 cut(s) | 635, 636 |
| NcoI | CCATGG | 1 cut(s) | 942 |
| NlaIII | CATG | 8 cut(s) | 49, 351, 751, 823, 848, 889, 946, 1003 |
| NlaIV | GGNNCC | 1 cut(s) | 768 |
| NmuCI | GTSAC | 1 cut(s) | 458 |
| NruI | TCGCGA | 1 cut(s) | 360 |
| NspI | RCATGY | 3 cut(s) | 49, 751, 848 |
| PaeI | GCATGC | 1 cut(s) | 848 |
| PciI | ACATGT | 1 cut(s) | 45 |
| PciSI | GCTCTTC | 1 cut(s) | 654 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 416 |
| PfeI | GAWTC | 4 cut(s) | 101, 221, 421, 775 |
| PkrI | GCNGC | 3 cut(s) | 428, 538, 625 |
| PleI | GAGTC | 2 cut(s) | 64, 184 |
| PpsI | GAGTC | 2 cut(s) | 64, 184 |
| PscI | ACATGT | 1 cut(s) | 45 |
| PshAI | GACNNNNGTC | 1 cut(s) | 862 |
| PshBI | ATTAAT | 1 cut(s) | 494 |
| PsiI | TTATAA | 1 cut(s) | 114 |
| Psp6I | CCWGG | 3 cut(s) | 32, 271, 1016 |
| PspGI | CCWGG | 3 cut(s) | 32, 271, 1016 |
| PspN4I | GGNNCC | 1 cut(s) | 768 |
| RruI | TCGCGA | 1 cut(s) | 360 |
| RsaI | GTAC | 2 cut(s) | 353, 916 |
| RsaNI | GTAC | 2 cut(s) | 352, 915 |
| RseI | CAYNNNNRTG | 1 cut(s) | 465 |
| SapI | GCTCTTC | 1 cut(s) | 654 |
| SaqAI | TTAA | 2 cut(s) | 234, 494 |
| SatI | GCNGC | 3 cut(s) | 427, 537, 624 |
| SchI | GAGTC | 2 cut(s) | 65, 184 |
| ScrFI | CCNGG | 5 cut(s) | 34, 273, 635, 636, 1018 |
| SexAI | ACCWGGT | 1 cut(s) | 1016 |
| SfaNI | GCATC | 1 cut(s) | 697 |
| SmaI | CCCGGG | 1 cut(s) | 636 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 465 |
| SmlI | CTYRAG | 2 cut(s) | 131, 965 |
| SmoI | CTYRAG | 2 cut(s) | 131, 965 |
| SphI | GCATGC | 1 cut(s) | 848 |
| Sse9I | AATT | 3 cut(s) | 491, 786, 976 |
| SsiI | CCGC | 1 cut(s) | 537 |
| SspMI | CTAG | 1 cut(s) | 671 |
| StyD4I | CCNGG | 5 cut(s) | 32, 271, 633, 634, 1016 |
| StyI | CCWWGG | 2 cut(s) | 447, 942 |
| TaaI | ACNGT | 3 cut(s) | 334, 376, 743 |
| TaiI | ACGT | 1 cut(s) | 357 |
| TaqI | TCGA | 1 cut(s) | 839 |
| TasI | AATT | 3 cut(s) | 491, 786, 976 |
| TauI | GCSGC | 1 cut(s) | 539 |
| TfiI | GAWTC | 4 cut(s) | 101, 221, 421, 775 |
| Tru1I | TTAA | 2 cut(s) | 234, 494 |
| Tru9I | TTAA | 2 cut(s) | 234, 494 |
| TseFI | GTSAC | 1 cut(s) | 458 |
| TseI | GCWGC | 2 cut(s) | 426, 623 |
| Tsp45I | GTSAC | 1 cut(s) | 458 |
| TspDTI | ATGAA | 5 cut(s) | 114, 483, 531, 672, 711 |
| TspMI | CCCGGG | 1 cut(s) | 634 |
| VspI | ATTAAT | 1 cut(s) | 494 |
| XapI | RAATTY | 1 cut(s) | 976 |
| XceI | RCATGY | 3 cut(s) | 49, 751, 848 |
| XmaI | CCCGGG | 1 cut(s) | 634 |
| XmiI | GTMKAC | 1 cut(s) | 825 |
| XspI | CTAG | 1 cut(s) | 671 |