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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 264 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AccII | CGCG | 3 cut(s) | 216, 315, 409 |
| AciI | CCGC | 5 cut(s) | 44, 264, 364, 404, 537 |
| AclWI | GGATC | 1 cut(s) | 68 |
| AcoI | YGGCCR | 1 cut(s) | 173 |
| AfaI | GTAC | 3 cut(s) | 23, 37, 517 |
| AfeI | AGCGCT | 1 cut(s) | 105 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 94, 527 |
| AgeI | ACCGGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 3 cut(s) | 52, 393, 488 |
| AluBI | AGCT | 1 cut(s) | 436 |
| AluI | AGCT | 1 cut(s) | 436 |
| Alw21I | GWGCWC | 2 cut(s) | 214, 449 |
| AlwI | GGATC | 1 cut(s) | 68 |
| Ama87I | CYCGRG | 2 cut(s) | 159, 372 |
| Aor51HI | AGCGCT | 1 cut(s) | 105 |
| AoxI | GGCC | 2 cut(s) | 173, 192 |
| AsiGI | ACCGGT | 1 cut(s) | 199 |
| AspLEI | GCGC | 2 cut(s) | 106, 409 |
| AspS9I | GGNCC | 1 cut(s) | 156 |
| AsuC2I | CCSGG | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 2 cut(s) | 189, 353 |
| AvaI | CYCGRG | 2 cut(s) | 159, 372 |
| AvaII | GGWCC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 2 cut(s) | 214, 449 |
| BccI | CCATC | 6 cut(s) | 96, 318, 348, 375, 421, 505 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BcnI | CCSGG | 1 cut(s) | 110 |
| BfaI | CTAG | 2 cut(s) | 332, 338 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BisI | GCNGC | 2 cut(s) | 45, 405 |
| BlsI | GCNGC | 2 cut(s) | 46, 406 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| Bme18I | GGWCC | 1 cut(s) | 156 |
| BmeT110I | CYCGRG | 2 cut(s) | 159, 372 |
| BmgT120I | GGNCC | 1 cut(s) | 156 |
| BmiI | GGNNCC | 1 cut(s) | 158 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BmsI | GCATC | 2 cut(s) | 208, 245 |
| BpuMI | CCSGG | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 373 |
| BsaWI | WCCGGW | 1 cut(s) | 199 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 94, 527 |
| Bse118I | RCCGGY | 1 cut(s) | 199 |
| BseDI | CCNNGG | 2 cut(s) | 8, 373 |
| BseGI | GGATG | 2 cut(s) | 236, 367 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 94, 527 |
| BseRI | GAGGAG | 3 cut(s) | 137, 140, 143 |
| BseX3I | CGGCCG | 1 cut(s) | 173 |
| Bsh1236I | CGCG | 3 cut(s) | 216, 315, 409 |
| Bsh1285I | CGRYCG | 1 cut(s) | 176 |
| BshFI | GGCC | 2 cut(s) | 175, 194 |
| BshTI | ACCGGT | 1 cut(s) | 199 |
| BsiEI | CGRYCG | 1 cut(s) | 176 |
| BsiHKAI | GWGCWC | 2 cut(s) | 214, 449 |
| BsiHKCI | CYCGRG | 2 cut(s) | 159, 372 |
| BsiSI | CCGG | 3 cut(s) | 109, 176, 200 |
| BslFI | GGGAC | 5 cut(s) | 27, 110, 125, 142, 391 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 94, 527 |
| BsmFI | GGGAC | 5 cut(s) | 27, 110, 125, 142, 391 |
| BsnI | GGCC | 2 cut(s) | 175, 194 |
| BsoBI | CYCGRG | 2 cut(s) | 159, 372 |
| Bsp1286I | GDGCHC | 2 cut(s) | 214, 449 |
| Bsp143I | GATC | 1 cut(s) | 73 |
| Bsp68I | TCGCGA | 2 cut(s) | 216, 315 |
| BspACI | CCGC | 5 cut(s) | 44, 264, 364, 404, 537 |
| BspANI | GGCC | 2 cut(s) | 175, 194 |
| BspFNI | CGCG | 3 cut(s) | 216, 315, 409 |
| BspLI | GGNNCC | 1 cut(s) | 158 |
| BspPI | GGATC | 1 cut(s) | 68 |
| BsrBI | CCGCTC | 1 cut(s) | 264 |
| BsrFI | RCCGGY | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 199 |
| BssECI | CCNNGG | 2 cut(s) | 8, 373 |
| BssMI | GATC | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 8 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 184 |
| Bst6I | CTCTTC | 3 cut(s) | 114, 248, 489 |
| BstC8I | GCNNGC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 2 cut(s) | 437, 464 |
| BstF5I | GGATG | 2 cut(s) | 236, 367 |
| BstFNI | CGCG | 3 cut(s) | 216, 315, 409 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 2 cut(s) | 106, 409 |
| BstKTI | GATC | 1 cut(s) | 76 |
| BstMBI | GATC | 1 cut(s) | 73 |
| BstMCI | CGRYCG | 1 cut(s) | 176 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 404 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstUI | CGCG | 3 cut(s) | 216, 315, 409 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 299 |
| BstZI | CGGCCG | 1 cut(s) | 173 |
| BsuRI | GGCC | 2 cut(s) | 175, 194 |
| BtgZI | GCGATG | 2 cut(s) | 231, 296 |
| BtsCI | GGATG | 2 cut(s) | 236, 367 |
| BtuMI | TCGCGA | 2 cut(s) | 216, 315 |
| Cac8I | GCNNGC | 1 cut(s) | 214 |
| CfoI | GCGC | 2 cut(s) | 106, 409 |
| Cfr10I | RCCGGY | 1 cut(s) | 199 |
| Cfr13I | GGNCC | 1 cut(s) | 156 |
| Csp6I | GTAC | 3 cut(s) | 22, 36, 516 |
| CspAI | ACCGGT | 1 cut(s) | 199 |
| CviJI | RGCY | 7 cut(s) | 175, 194, 281, 304, 335, 343, 436 |
| CviKI_1 | RGCY | 7 cut(s) | 175, 194, 281, 304, 335, 343, 436 |
| CviQI | GTAC | 3 cut(s) | 22, 36, 516 |
| DdeI | CTNAG | 2 cut(s) | 437, 464 |
| DpnI | GATC | 1 cut(s) | 75 |
| DpnII | GATC | 1 cut(s) | 73 |
| EaeI | YGGCCR | 1 cut(s) | 173 |
| EagI | CGGCCG | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 3 cut(s) | 114, 248, 489 |
| EarI | CTCTTC | 3 cut(s) | 114, 248, 489 |
| EclXI | CGGCCG | 1 cut(s) | 173 |
| Eco130I | CCWWGG | 1 cut(s) | 8 |
| Eco147I | AGGCCT | 1 cut(s) | 194 |
| Eco32I | GATATC | 1 cut(s) | 456 |
| Eco47I | GGWCC | 1 cut(s) | 156 |
| Eco47III | AGCGCT | 1 cut(s) | 105 |
| Eco52I | CGGCCG | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 2 cut(s) | 159, 372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 156 |
| EcoRV | GATATC | 1 cut(s) | 456 |
| EcoT14I | CCWWGG | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 8 |
| FaiI | YATR | 2 cut(s) | 20, 72 |
| FaqI | GGGAC | 5 cut(s) | 27, 110, 125, 142, 391 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 405 |
| FokI | GGATG | 2 cut(s) | 223, 354 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 405 |
| FspBI | CTAG | 2 cut(s) | 332, 338 |
| GlaI | GCGC | 2 cut(s) | 105, 408 |
| GluI | GCNGC | 2 cut(s) | 45, 405 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 2 cut(s) | 175, 194 |
| HapII | CCGG | 3 cut(s) | 109, 176, 200 |
| HhaI | GCGC | 2 cut(s) | 106, 409 |
| Hin6I | GCGC | 2 cut(s) | 104, 407 |
| HinP1I | GCGC | 2 cut(s) | 104, 407 |
| HinfI | GANTC | 2 cut(s) | 358, 379 |
| HpaII | CCGG | 3 cut(s) | 109, 176, 200 |
| HphI | GGTGA | 2 cut(s) | 189, 353 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 518 |
| Hpy188III | TCNNGA | 3 cut(s) | 159, 215, 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 518 |
| Hpy99I | CGWCG | 1 cut(s) | 188 |
| HpyAV | CCTTC | 4 cut(s) | 338, 499, 521, 527 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 184 |
| HpyCH4IV | ACGT | 2 cut(s) | 16, 490 |
| HpyCH4V | TGCA | 1 cut(s) | 221 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 404 |
| HpyF3I | CTNAG | 2 cut(s) | 437, 464 |
| HpySE526I | ACGT | 2 cut(s) | 16, 490 |
| HspAI | GCGC | 2 cut(s) | 104, 407 |
| Kzo9I | GATC | 1 cut(s) | 73 |
| LmnI | GCTCC | 1 cut(s) | 111 |
| LpnPI | CCDG | 4 cut(s) | 18, 122, 189, 213 |
| LweI | GCATC | 2 cut(s) | 208, 245 |
| MaeI | CTAG | 2 cut(s) | 332, 338 |
| MaeII | ACGT | 2 cut(s) | 16, 490 |
| MaeIII | GTNAC | 2 cut(s) | 245, 359 |
| MalI | GATC | 1 cut(s) | 75 |
| MbiI | CCGCTC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 73 |
| MboII | GAAGA | 4 cut(s) | 128, 131, 265, 476 |
| MhlI | GDGCHC | 2 cut(s) | 214, 449 |
| MluCI | AATT | 3 cut(s) | 293, 318, 544 |
| MlyI | GAGTC | 2 cut(s) | 367, 373 |
| MmeI | TCCRAC | 1 cut(s) | 407 |
| MseI | TTAA | 1 cut(s) | 296 |
| MslI | CAYNNNNRTG | 1 cut(s) | 241 |
| MspI | CCGG | 3 cut(s) | 109, 176, 200 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| MvnI | CGCG | 3 cut(s) | 216, 315, 409 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 404 |
| NciI | CCSGG | 1 cut(s) | 110 |
| NdeII | GATC | 1 cut(s) | 73 |
| NlaIV | GGNNCC | 1 cut(s) | 158 |
| NmuCI | GTSAC | 2 cut(s) | 245, 359 |
| NruI | TCGCGA | 2 cut(s) | 216, 315 |
| PceI | AGGCCT | 1 cut(s) | 194 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 257 |
| PflFI | GACNNNGTC | 2 cut(s) | 154, 182 |
| PfoI | TCCNGGA | 1 cut(s) | 108 |
| PinAI | ACCGGT | 1 cut(s) | 199 |
| PkrI | GCNGC | 2 cut(s) | 46, 406 |
| PleI | GAGTC | 2 cut(s) | 366, 373 |
| PpsI | GAGTC | 2 cut(s) | 366, 373 |
| PpuMI | RGGWCCY | 1 cut(s) | 156 |
| Psp5II | RGGWCCY | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 1 cut(s) | 158 |
| PspPI | GGNCC | 1 cut(s) | 156 |
| PspPPI | RGGWCCY | 1 cut(s) | 156 |
| PsyI | GACNNNGTC | 2 cut(s) | 154, 182 |
| RruI | TCGCGA | 2 cut(s) | 216, 315 |
| RsaI | GTAC | 3 cut(s) | 23, 37, 517 |
| RsaNI | GTAC | 3 cut(s) | 22, 36, 516 |
| RseI | CAYNNNNRTG | 1 cut(s) | 241 |
| SaqAI | TTAA | 1 cut(s) | 296 |
| SatI | GCNGC | 2 cut(s) | 45, 405 |
| Sau3AI | GATC | 1 cut(s) | 73 |
| Sau96I | GGNCC | 1 cut(s) | 156 |
| SchI | GAGTC | 2 cut(s) | 367, 373 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 2 cut(s) | 214, 449 |
| SetI | ASST | 9 cut(s) | 19, 37, 71, 158, 260, 330, 415, 438, 493 |
| SfaNI | GCATC | 2 cut(s) | 208, 245 |
| SgrAI | CRCCGGYG | 1 cut(s) | 199 |
| SinI | GGWCC | 1 cut(s) | 156 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 241 |
| Sse9I | AATT | 3 cut(s) | 293, 318, 544 |
| SseBI | AGGCCT | 1 cut(s) | 194 |
| SsiI | CCGC | 5 cut(s) | 44, 264, 364, 404, 537 |
| SspMI | CTAG | 2 cut(s) | 332, 338 |
| StuI | AGGCCT | 1 cut(s) | 194 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 1 cut(s) | 8 |
| TaaI | ACNGT | 2 cut(s) | 63, 184 |
| TaiI | ACGT | 2 cut(s) | 19, 493 |
| TaqI | TCGA | 2 cut(s) | 91, 260 |
| TasI | AATT | 3 cut(s) | 293, 318, 544 |
| TauI | GCSGC | 2 cut(s) | 47, 407 |
| Tru1I | TTAA | 1 cut(s) | 296 |
| Tru9I | TTAA | 1 cut(s) | 296 |
| TseFI | GTSAC | 2 cut(s) | 245, 359 |
| Tsp45I | GTSAC | 2 cut(s) | 245, 359 |
| TspDTI | ATGAA | 1 cut(s) | 262 |
| Tth111I | GACNNNGTC | 2 cut(s) | 154, 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 156 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 296, 351 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XspI | CTAG | 2 cut(s) | 332, 338 |