Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 368 |
| AccB1I | GGYRCC | 2 cut(s) | 184, 427 |
| AccI | GTMKAC | 1 cut(s) | 134 |
| AccII | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| AclWI | GGATC | 5 cut(s) | 2, 433, 482, 495, 832 |
| AcoI | YGGCCR | 2 cut(s) | 443, 689 |
| AcsI | RAATTY | 1 cut(s) | 1036 |
| AcyI | GRCGYC | 2 cut(s) | 365, 428 |
| AfaI | GTAC | 3 cut(s) | 63, 497, 617 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 441 |
| AgsI | TTSAA | 3 cut(s) | 733, 755, 1120 |
| AjiI | CACGTC | 1 cut(s) | 132 |
| AjnI | CCWGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| AleI | CACNNNNGTG | 1 cut(s) | 923 |
| AluBI | AGCT | 6 cut(s) | 599, 727, 853, 933, 1085, 1115 |
| AluI | AGCT | 6 cut(s) | 599, 727, 853, 933, 1085, 1115 |
| Alw26I | GTCTC | 1 cut(s) | 72 |
| AlwI | GGATC | 5 cut(s) | 2, 433, 482, 495, 832 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1085 |
| Ama87I | CYCGRG | 2 cut(s) | 75, 758 |
| AoxI | GGCC | 4 cut(s) | 443, 531, 545, 689 |
| ApeKI | GCWGC | 4 cut(s) | 326, 344, 796, 1112 |
| ApoI | RAATTY | 1 cut(s) | 1036 |
| AseI | ATTAAT | 1 cut(s) | 914 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 728 |
| AspLEI | GCGC | 3 cut(s) | 101, 430, 673 |
| AspS9I | GGNCC | 3 cut(s) | 531, 546, 572 |
| AsuHPI | GGTGA | 3 cut(s) | 310, 464, 1033 |
| AvaI | CYCGRG | 2 cut(s) | 75, 758 |
| AvaII | GGWCC | 1 cut(s) | 572 |
| BamHI | GGATCC | 1 cut(s) | 487 |
| BanI | GGYRCC | 2 cut(s) | 184, 427 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbvCI | CCTCAGC | 1 cut(s) | 1086 |
| BbvI | GCAGC | 4 cut(s) | 313, 356, 808, 1124 |
| BccI | CCATC | 3 cut(s) | 248, 712, 781 |
| BciT130I | CCWGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| BciVI | GTATCC | 1 cut(s) | 251 |
| BclI | TGATCA | 1 cut(s) | 315 |
| BcoDI | GTCTC | 1 cut(s) | 72 |
| BfaI | CTAG | 4 cut(s) | 12, 32, 51, 138 |
| BfmI | CTRYAG | 1 cut(s) | 903 |
| BfoI | RGCGCY | 1 cut(s) | 431 |
| BfuI | GTATCC | 1 cut(s) | 251 |
| BisI | GCNGC | 9 cut(s) | 97, 324, 327, 345, 397, 479, 669, 797, 1113 |
| BlpI | GCTNAGC | 1 cut(s) | 792 |
| BlsI | GCNGC | 9 cut(s) | 98, 325, 328, 346, 398, 480, 670, 798, 1114 |
| Bme1390I | CCNGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| Bme18I | GGWCC | 1 cut(s) | 572 |
| BmeT110I | CYCGRG | 2 cut(s) | 75, 758 |
| BmgBI | CACGTC | 1 cut(s) | 132 |
| BmgT120I | GGNCC | 3 cut(s) | 531, 546, 572 |
| BmiI | GGNNCC | 5 cut(s) | 186, 429, 489, 573, 574 |
| BmrFI | CCNGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| BmsI | GCATC | 2 cut(s) | 682, 949 |
| Bpu10I | CCTNAGC | 2 cut(s) | 947, 1086 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 792 |
| BpuEI | CTTGAG | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 391 |
| BsaHI | GRCGYC | 2 cut(s) | 365, 428 |
| BsaJI | CCNNGG | 7 cut(s) | 225, 321, 483, 491, 692, 759, 995 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 639, 669 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 441 |
| Bse1I | ACTGG | 5 cut(s) | 415, 446, 713, 894, 1132 |
| Bse3DI | GCAATG | 1 cut(s) | 318 |
| BseBI | CCWGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| BseDI | CCNNGG | 7 cut(s) | 225, 321, 483, 491, 692, 759, 995 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 441 |
| BseMI | GCAATG | 1 cut(s) | 318 |
| BseMII | CTCAG | 5 cut(s) | 657, 797, 806, 961, 1077 |
| BseNI | ACTGG | 5 cut(s) | 415, 446, 713, 894, 1132 |
| BseRI | GAGGAG | 1 cut(s) | 1103 |
| BseXI | GCAGC | 4 cut(s) | 313, 356, 808, 1124 |
| Bsh1236I | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| BshFI | GGCC | 4 cut(s) | 445, 533, 547, 691 |
| BshNI | GGYRCC | 2 cut(s) | 184, 427 |
| BsiHKCI | CYCGRG | 2 cut(s) | 75, 758 |
| BsiSI | CCGG | 3 cut(s) | 116, 442, 869 |
| BslFI | GGGAC | 3 cut(s) | 25, 223, 558 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 441 |
| BsmAI | GTCTC | 1 cut(s) | 72 |
| BsmFI | GGGAC | 3 cut(s) | 25, 223, 558 |
| BsnI | GGCC | 4 cut(s) | 445, 533, 547, 691 |
| BsoBI | CYCGRG | 2 cut(s) | 75, 758 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| Bsp143I | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 792 |
| BspANI | GGCC | 4 cut(s) | 445, 533, 547, 691 |
| BspCNI | CTCAG | 5 cut(s) | 656, 796, 805, 960, 1078 |
| BspFNI | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| BspLI | GGNNCC | 5 cut(s) | 186, 429, 489, 573, 574 |
| BspPI | GGATC | 5 cut(s) | 2, 433, 482, 495, 832 |
| BspT107I | GGYRCC | 2 cut(s) | 184, 427 |
| BsrDI | GCAATG | 1 cut(s) | 318 |
| BsrI | ACTGG | 5 cut(s) | 415, 446, 713, 894, 1132 |
| BssECI | CCNNGG | 7 cut(s) | 225, 321, 483, 491, 692, 759, 995 |
| BssMI | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| BssNI | GRCGYC | 2 cut(s) | 365, 428 |
| Bst2UI | CCWGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| Bst4CI | ACNGT | 2 cut(s) | 193, 814 |
| Bst6I | CTCTTC | 3 cut(s) | 504, 513, 979 |
| BstACI | GRCGYC | 2 cut(s) | 365, 428 |
| BstBAI | YACGTR | 1 cut(s) | 391 |
| BstC8I | GCNNGC | 2 cut(s) | 597, 714 |
| BstDEI | CTNAG | 5 cut(s) | 643, 783, 792, 947, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstFNI | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| BstH2I | RGCGCY | 1 cut(s) | 431 |
| BstHHI | GCGC | 3 cut(s) | 101, 430, 673 |
| BstKTI | GATC | 6 cut(s) | 10, 318, 441, 490, 769, 840 |
| BstMAI | GTCTC | 1 cut(s) | 72 |
| BstMBI | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1000 |
| BstNI | CCWGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| BstNSI | RCATGY | 1 cut(s) | 994 |
| BstSCI | CCNGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| BstSFI | CTRYAG | 1 cut(s) | 903 |
| BstUI | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| BstV1I | GCAGC | 4 cut(s) | 313, 356, 808, 1124 |
| BstX2I | RGATCY | 3 cut(s) | 7, 487, 837 |
| BstYI | RGATCY | 3 cut(s) | 7, 487, 837 |
| BsuI | GTATCC | 1 cut(s) | 251 |
| BsuRI | GGCC | 4 cut(s) | 445, 533, 547, 691 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BtgZI | GCGATG | 2 cut(s) | 267, 731 |
| BtrI | CACGTC | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 2 cut(s) | 597, 714 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1085 |
| CfoI | GCGC | 3 cut(s) | 101, 430, 673 |
| Cfr13I | GGNCC | 3 cut(s) | 531, 546, 572 |
| Cfr42I | CCGCGG | 1 cut(s) | 324 |
| CseI | GACGC | 1 cut(s) | 1128 |
| CsiI | ACCWGGT | 1 cut(s) | 294 |
| Csp6I | GTAC | 3 cut(s) | 62, 496, 616 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 573, 608 |
| CviAII | CATG | 3 cut(s) | 859, 964, 991 |
| CviQI | GTAC | 3 cut(s) | 62, 496, 616 |
| DdeI | CTNAG | 5 cut(s) | 643, 783, 792, 947, 1086 |
| DinI | GGCGCC | 1 cut(s) | 429 |
| DpnI | GATC | 6 cut(s) | 9, 317, 440, 489, 768, 839 |
| DpnII | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| DraI | TTTAAA | 1 cut(s) | 216 |
| EaeI | YGGCCR | 2 cut(s) | 443, 689 |
| Eam1104I | CTCTTC | 3 cut(s) | 504, 513, 979 |
| EarI | CTCTTC | 3 cut(s) | 504, 513, 979 |
| EciI | GGCGGA | 1 cut(s) | 465 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco47I | GGWCC | 1 cut(s) | 572 |
| Eco88I | CYCGRG | 2 cut(s) | 75, 758 |
| EcoO109I | RGGNCCY | 2 cut(s) | 531, 572 |
| EcoRII | CCWGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| EgeI | GGCGCC | 1 cut(s) | 429 |
| EheI | GGCGCC | 1 cut(s) | 429 |
| FaeI | CATG | 3 cut(s) | 862, 967, 994 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 196, 228 |
| FaqI | GGGAC | 3 cut(s) | 25, 223, 558 |
| FatI | CATG | 3 cut(s) | 858, 963, 990 |
| FauI | CCCGC | 2 cut(s) | 200, 705 |
| FbaI | TGATCA | 1 cut(s) | 315 |
| FblI | GTMKAC | 1 cut(s) | 134 |
| Fnu4HI | GCNGC | 9 cut(s) | 97, 324, 327, 345, 397, 479, 669, 797, 1113 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 9 cut(s) | 97, 324, 327, 345, 397, 479, 669, 797, 1113 |
| FspBI | CTAG | 4 cut(s) | 12, 32, 51, 138 |
| GlaI | GCGC | 3 cut(s) | 100, 429, 672 |
| GluI | GCNGC | 9 cut(s) | 97, 324, 327, 345, 397, 479, 669, 797, 1113 |
| HaeII | RGCGCY | 1 cut(s) | 431 |
| HaeIII | GGCC | 4 cut(s) | 445, 533, 547, 691 |
| HapII | CCGG | 3 cut(s) | 116, 442, 869 |
| HgaI | GACGC | 1 cut(s) | 1128 |
| HhaI | GCGC | 3 cut(s) | 101, 430, 673 |
| Hin1I | GRCGYC | 2 cut(s) | 365, 428 |
| Hin1II | CATG | 3 cut(s) | 862, 967, 994 |
| Hin6I | GCGC | 3 cut(s) | 99, 428, 671 |
| HinP1I | GCGC | 3 cut(s) | 99, 428, 671 |
| HincII | GTYRAC | 3 cut(s) | 135, 292, 1143 |
| HindII | GTYRAC | 3 cut(s) | 135, 292, 1143 |
| HindIII | AAGCTT | 1 cut(s) | 931 |
| HinfI | GANTC | 7 cut(s) | 231, 278, 334, 806, 959, 1067, 1091 |
| HpaII | CCGG | 3 cut(s) | 116, 442, 869 |
| HphI | GGTGA | 3 cut(s) | 310, 464, 1033 |
| Hpy166II | GTNNAC | 5 cut(s) | 135, 292, 408, 1024, 1143 |
| Hpy188I | TCNGA | 6 cut(s) | 159, 487, 581, 678, 786, 1096 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 645, 835 |
| Hpy8I | GTNNAC | 5 cut(s) | 135, 292, 408, 1024, 1143 |
| Hpy99I | CGWCG | 2 cut(s) | 136, 818 |
| HpyAV | CCTTC | 3 cut(s) | 586, 649, 783 |
| HpyCH4III | ACNGT | 2 cut(s) | 193, 814 |
| HpyCH4IV | ACGT | 5 cut(s) | 131, 356, 365, 390, 629 |
| HpyCH4V | TGCA | 2 cut(s) | 329, 595 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1000 |
| HpyF3I | CTNAG | 5 cut(s) | 643, 783, 792, 947, 1086 |
| HpySE526I | ACGT | 5 cut(s) | 131, 356, 365, 390, 629 |
| Hsp92I | GRCGYC | 2 cut(s) | 365, 428 |
| Hsp92II | CATG | 3 cut(s) | 862, 967, 994 |
| HspAI | GCGC | 3 cut(s) | 99, 428, 671 |
| KasI | GGCGCC | 1 cut(s) | 427 |
| KflI | GGGWCCC | 1 cut(s) | 572 |
| Ksp22I | TGATCA | 1 cut(s) | 315 |
| KspI | CCGCGG | 1 cut(s) | 324 |
| Kzo9I | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| LmnI | GCTCC | 1 cut(s) | 604 |
| Lsp1109I | GCAGC | 4 cut(s) | 313, 356, 808, 1124 |
| LweI | GCATC | 2 cut(s) | 682, 949 |
| MabI | ACCWGGT | 1 cut(s) | 294 |
| MaeI | CTAG | 4 cut(s) | 12, 32, 51, 138 |
| MaeII | ACGT | 5 cut(s) | 131, 356, 365, 390, 629 |
| MaeIII | GTNAC | 2 cut(s) | 193, 357 |
| MalI | GATC | 6 cut(s) | 9, 317, 440, 489, 768, 839 |
| MboI | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| MboII | GAAGA | 8 cut(s) | 287, 521, 530, 662, 920, 966, 1109, 1112 |
| MflI | RGATCY | 3 cut(s) | 7, 487, 837 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MluCI | AATT | 2 cut(s) | 911, 1036 |
| Mly113I | GGCGCC | 1 cut(s) | 428 |
| MlyI | GAGTC | 3 cut(s) | 343, 953, 1100 |
| MmeI | TCCRAC | 2 cut(s) | 604, 850 |
| MroXI | GAANNNNTTC | 1 cut(s) | 728 |
| MseI | TTAA | 2 cut(s) | 215, 914 |
| MslI | CAYNNNNRTG | 2 cut(s) | 785, 923 |
| MspA1I | CMGCKG | 1 cut(s) | 323 |
| MspI | CCGG | 3 cut(s) | 116, 442, 869 |
| MspR9I | CCNGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| MvaI | CCWGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| MvnI | CGCG | 4 cut(s) | 101, 323, 668, 704 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1000 |
| NarI | GGCGCC | 1 cut(s) | 428 |
| NdeII | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| NlaIII | CATG | 3 cut(s) | 862, 967, 994 |
| NlaIV | GGNNCC | 5 cut(s) | 186, 429, 489, 573, 574 |
| NmuCI | GTSAC | 1 cut(s) | 193 |
| NspI | RCATGY | 1 cut(s) | 994 |
| OliI | CACNNNNGTG | 1 cut(s) | 923 |
| PaeR7I | CTCGAG | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 362 |
| PdmI | GAANNNNTTC | 1 cut(s) | 728 |
| PfeI | GAWTC | 4 cut(s) | 231, 278, 806, 1067 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 9 cut(s) | 98, 325, 328, 346, 398, 480, 670, 798, 1114 |
| PleI | GAGTC | 3 cut(s) | 342, 953, 1099 |
| PluTI | GGCGCC | 1 cut(s) | 431 |
| PpsI | GAGTC | 3 cut(s) | 342, 953, 1099 |
| Ppu21I | YACGTR | 1 cut(s) | 391 |
| PpuMI | RGGWCCY | 1 cut(s) | 572 |
| PshBI | ATTAAT | 1 cut(s) | 914 |
| Psp5II | RGGWCCY | 1 cut(s) | 572 |
| Psp6I | CCWGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| PspGI | CCWGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| PspN4I | GGNNCC | 5 cut(s) | 186, 429, 489, 573, 574 |
| PspPI | GGNCC | 3 cut(s) | 531, 546, 572 |
| PspPPI | RGGWCCY | 1 cut(s) | 572 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1085 |
| PsuI | RGATCY | 3 cut(s) | 7, 487, 837 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| RsaI | GTAC | 3 cut(s) | 63, 497, 617 |
| RsaNI | GTAC | 3 cut(s) | 62, 496, 616 |
| RseI | CAYNNNNRTG | 2 cut(s) | 785, 923 |
| SacII | CCGCGG | 1 cut(s) | 324 |
| SalI | GTCGAC | 1 cut(s) | 133 |
| SaqAI | TTAA | 2 cut(s) | 215, 914 |
| SatI | GCNGC | 9 cut(s) | 97, 324, 327, 345, 397, 479, 669, 797, 1113 |
| Sau3AI | GATC | 6 cut(s) | 7, 315, 438, 487, 766, 837 |
| Sau96I | GGNCC | 3 cut(s) | 531, 546, 572 |
| SchI | GAGTC | 3 cut(s) | 343, 953, 1100 |
| ScrFI | CCNGG | 5 cut(s) | 226, 296, 492, 693, 996 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SexAI | ACCWGGT | 1 cut(s) | 294 |
| SfaNI | GCATC | 2 cut(s) | 682, 949 |
| SfcI | CTRYAG | 1 cut(s) | 903 |
| SfoI | GGCGCC | 1 cut(s) | 429 |
| Sfr274I | CTCGAG | 1 cut(s) | 75 |
| Sfr303I | CCGCGG | 1 cut(s) | 324 |
| SgrBI | CCGCGG | 1 cut(s) | 324 |
| SinI | GGWCC | 1 cut(s) | 572 |
| SlaI | CTCGAG | 1 cut(s) | 75 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 785, 923 |
| SmlI | CTYRAG | 2 cut(s) | 75, 239 |
| SmoI | CTYRAG | 2 cut(s) | 75, 239 |
| Sse9I | AATT | 2 cut(s) | 911, 1036 |
| SspDI | GGCGCC | 1 cut(s) | 427 |
| SspI | AATATT | 1 cut(s) | 462 |
| SspMI | CTAG | 4 cut(s) | 12, 32, 51, 138 |
| StyD4I | CCNGG | 5 cut(s) | 224, 294, 490, 691, 994 |
| TaaI | ACNGT | 2 cut(s) | 193, 814 |
| TaiI | ACGT | 5 cut(s) | 134, 359, 368, 393, 632 |
| TaqI | TCGA | 5 cut(s) | 76, 134, 177, 234, 536 |
| TasI | AATT | 2 cut(s) | 911, 1036 |
| TauI | GCSGC | 5 cut(s) | 99, 326, 399, 481, 671 |
| TfiI | GAWTC | 4 cut(s) | 231, 278, 806, 1067 |
| Tru1I | TTAA | 2 cut(s) | 215, 914 |
| Tru9I | TTAA | 2 cut(s) | 215, 914 |
| TseFI | GTSAC | 1 cut(s) | 193 |
| TseI | GCWGC | 4 cut(s) | 326, 344, 796, 1112 |
| Tsp45I | GTSAC | 1 cut(s) | 193 |
| TspDTI | ATGAA | 1 cut(s) | 1119 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 572 |
| VspI | ATTAAT | 1 cut(s) | 914 |
| XapI | RAATTY | 1 cut(s) | 1036 |
| XceI | RCATGY | 1 cut(s) | 994 |
| XhoI | CTCGAG | 1 cut(s) | 75 |
| XmiI | GTMKAC | 1 cut(s) | 134 |
| XmnI | GAANNNNTTC | 1 cut(s) | 728 |
| XspI | CTAG | 4 cut(s) | 12, 32, 51, 138 |
| ZraI | GACGTC | 1 cut(s) | 366 |