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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 161 |
| AccII | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| AciI | CCGC | 3 cut(s) | 77, 181, 199 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 173, 174 |
| AflIII | ACRYGT | 1 cut(s) | 330 |
| AgsI | TTSAA | 1 cut(s) | 259 |
| AjiI | CACGTC | 1 cut(s) | 333 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AluBI | AGCT | 1 cut(s) | 289 |
| AluI | AGCT | 1 cut(s) | 289 |
| Alw26I | GTCTC | 3 cut(s) | 49, 89, 308 |
| AoxI | GGCC | 1 cut(s) | 214 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AsuC2I | CCSGG | 1 cut(s) | 60 |
| BanII | GRGCYC | 1 cut(s) | 180 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BcnI | CCSGG | 1 cut(s) | 60 |
| BcoDI | GTCTC | 3 cut(s) | 49, 89, 308 |
| BfaI | CTAG | 1 cut(s) | 131 |
| BlpI | GCTNAGC | 2 cut(s) | 36, 249 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 296 |
| BmgBI | CACGTC | 1 cut(s) | 333 |
| BmiI | GGNNCC | 3 cut(s) | 27, 153, 179 |
| BmrFI | CCNGG | 2 cut(s) | 60, 296 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 36, 249 |
| BpuMI | CCSGG | 1 cut(s) | 60 |
| BsaI | GGTCTC | 2 cut(s) | 49, 89 |
| BsaJI | CCNNGG | 1 cut(s) | 59 |
| BsaWI | WCCGGW | 1 cut(s) | 28 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 173, 174 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 1 cut(s) | 59 |
| BseGI | GGATG | 1 cut(s) | 267 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 173, 174 |
| BseRI | GAGGAG | 1 cut(s) | 326 |
| Bsh1236I | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BsiSI | CCGG | 2 cut(s) | 29, 59 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 173, 174 |
| BsmAI | GTCTC | 3 cut(s) | 49, 89, 308 |
| BsnI | GGCC | 1 cut(s) | 216 |
| Bso31I | GGTCTC | 2 cut(s) | 49, 89 |
| Bsp1286I | GDGCHC | 1 cut(s) | 180 |
| Bsp143I | GATC | 1 cut(s) | 238 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 36, 249 |
| Bsp68I | TCGCGA | 1 cut(s) | 21 |
| BspACI | CCGC | 3 cut(s) | 77, 181, 199 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BspFNI | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| BspLI | GGNNCC | 3 cut(s) | 27, 153, 179 |
| BspTNI | GGTCTC | 2 cut(s) | 49, 89 |
| BssECI | CCNNGG | 1 cut(s) | 59 |
| BssMI | GATC | 1 cut(s) | 238 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| BstDEI | CTNAG | 2 cut(s) | 36, 249 |
| BstF5I | GGATG | 1 cut(s) | 267 |
| BstFNI | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 1 cut(s) | 241 |
| BstMAI | GTCTC | 3 cut(s) | 49, 89, 308 |
| BstMBI | GATC | 1 cut(s) | 238 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstSCI | CCNGG | 2 cut(s) | 58, 294 |
| BstUI | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| BtrI | CACGTC | 1 cut(s) | 333 |
| BtsCI | GGATG | 1 cut(s) | 267 |
| BtuMI | TCGCGA | 1 cut(s) | 21 |
| CfoI | GCGC | 1 cut(s) | 9 |
| CviAII | CATG | 1 cut(s) | 343 |
| CviJI | RGCY | 7 cut(s) | 35, 40, 178, 216, 248, 289, 325 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 40, 178, 216, 248, 289, 325 |
| DdeI | CTNAG | 2 cut(s) | 36, 249 |
| DpnI | GATC | 1 cut(s) | 240 |
| DpnII | GATC | 1 cut(s) | 238 |
| Eco147I | AGGCCT | 1 cut(s) | 216 |
| Eco24I | GRGCYC | 1 cut(s) | 180 |
| Eco31I | GGTCTC | 2 cut(s) | 49, 89 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT38I | GRGCYC | 1 cut(s) | 180 |
| FaeI | CATG | 1 cut(s) | 346 |
| FaiI | YATR | 4 cut(s) | 143, 195, 308, 344 |
| FatI | CATG | 1 cut(s) | 342 |
| FblI | GTMKAC | 1 cut(s) | 161 |
| FokI | GGATG | 1 cut(s) | 254 |
| FriOI | GRGCYC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 131 |
| GlaI | GCGC | 1 cut(s) | 8 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HapII | CCGG | 2 cut(s) | 29, 59 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 1 cut(s) | 346 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HincII | GTYRAC | 2 cut(s) | 162, 277 |
| HindII | GTYRAC | 2 cut(s) | 162, 277 |
| HindIII | AAGCTT | 1 cut(s) | 287 |
| HinfI | GANTC | 2 cut(s) | 163, 227 |
| HpaI | GTTAAC | 1 cut(s) | 277 |
| HpaII | CCGG | 2 cut(s) | 29, 59 |
| Hpy166II | GTNNAC | 2 cut(s) | 162, 277 |
| Hpy188III | TCNNGA | 1 cut(s) | 20 |
| Hpy8I | GTNNAC | 2 cut(s) | 162, 277 |
| HpyAV | CCTTC | 1 cut(s) | 51 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4IV | ACGT | 1 cut(s) | 332 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 249 |
| HpySE526I | ACGT | 1 cut(s) | 332 |
| Hsp92II | CATG | 1 cut(s) | 346 |
| HspAI | GCGC | 1 cut(s) | 7 |
| KspAI | GTTAAC | 1 cut(s) | 277 |
| Kzo9I | GATC | 1 cut(s) | 238 |
| LmnI | GCTCC | 2 cut(s) | 63, 183 |
| LpnPI | CCDG | 5 cut(s) | 42, 52, 72, 281, 308 |
| MaeI | CTAG | 1 cut(s) | 131 |
| MaeII | ACGT | 1 cut(s) | 332 |
| MaeIII | GTNAC | 1 cut(s) | 338 |
| MalI | GATC | 1 cut(s) | 240 |
| MboI | GATC | 1 cut(s) | 238 |
| MboII | GAAGA | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 180 |
| MluCI | AATT | 1 cut(s) | 254 |
| MlyI | GAGTC | 2 cut(s) | 157, 236 |
| MnlI | CCTC | 6 cut(s) | 16, 25, 127, 199, 206, 304 |
| MseI | TTAA | 2 cut(s) | 276, 349 |
| MspI | CCGG | 2 cut(s) | 29, 59 |
| MspR9I | CCNGG | 2 cut(s) | 60, 296 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MvnI | CGCG | 4 cut(s) | 7, 21, 79, 183 |
| NciI | CCSGG | 1 cut(s) | 60 |
| NdeII | GATC | 1 cut(s) | 238 |
| NlaIII | CATG | 1 cut(s) | 346 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 153, 179 |
| NruI | TCGCGA | 1 cut(s) | 21 |
| PceI | AGGCCT | 1 cut(s) | 216 |
| PleI | GAGTC | 2 cut(s) | 157, 235 |
| PpsI | GAGTC | 2 cut(s) | 157, 235 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 153, 179 |
| RruI | TCGCGA | 1 cut(s) | 21 |
| SalI | GTCGAC | 1 cut(s) | 160 |
| SaqAI | TTAA | 2 cut(s) | 276, 349 |
| Sau3AI | GATC | 1 cut(s) | 238 |
| SchI | GAGTC | 2 cut(s) | 157, 236 |
| ScrFI | CCNGG | 2 cut(s) | 60, 296 |
| SduI | GDGCHC | 1 cut(s) | 180 |
| SetI | ASST | 7 cut(s) | 14, 109, 138, 210, 291, 297, 335 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SseBI | AGGCCT | 1 cut(s) | 216 |
| SsiI | CCGC | 3 cut(s) | 77, 181, 199 |
| SspMI | CTAG | 1 cut(s) | 131 |
| StuI | AGGCCT | 1 cut(s) | 216 |
| StyD4I | CCNGG | 2 cut(s) | 58, 294 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaiI | ACGT | 1 cut(s) | 335 |
| TaqI | TCGA | 3 cut(s) | 110, 161, 327 |
| TasI | AATT | 1 cut(s) | 254 |
| Tru1I | TTAA | 2 cut(s) | 276, 349 |
| Tru9I | TTAA | 2 cut(s) | 276, 349 |
| TspGWI | ACGGA | 1 cut(s) | 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 292 |
| XmiI | GTMKAC | 1 cut(s) | 161 |
| XspI | CTAG | 1 cut(s) | 131 |