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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 431 |
| AccII | CGCG | 3 cut(s) | 179, 267, 407 |
| AciI | CCGC | 3 cut(s) | 289, 426, 596 |
| AclWI | GGATC | 2 cut(s) | 533, 546 |
| AcoI | YGGCCR | 3 cut(s) | 30, 480, 565 |
| AfaI | GTAC | 3 cut(s) | 334, 590, 594 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 171, 298 |
| AgsI | TTSAA | 2 cut(s) | 502, 523 |
| AhlI | ACTAGT | 1 cut(s) | 59 |
| AjnI | CCWGG | 1 cut(s) | 504 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 158, 190, 377, 409 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 3 cut(s) | 259, 494, 530 |
| AluI | AGCT | 3 cut(s) | 259, 494, 530 |
| Alw26I | GTCTC | 3 cut(s) | 111, 233, 296 |
| AlwI | GGATC | 2 cut(s) | 533, 546 |
| AoxI | GGCC | 5 cut(s) | 30, 43, 66, 480, 565 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 212, 244 |
| AspA2I | CCTAGG | 1 cut(s) | 553 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuNHI | GCTAGC | 1 cut(s) | 362 |
| AvrII | CCTAGG | 1 cut(s) | 553 |
| BalI | TGGCCA | 2 cut(s) | 482, 567 |
| BamHI | GGATCC | 1 cut(s) | 538 |
| BbsI | GAAGAC | 1 cut(s) | 437 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BccI | CCATC | 5 cut(s) | 211, 213, 244, 449, 580 |
| BceAI | ACGGC | 2 cut(s) | 17, 335 |
| BciT130I | CCWGG | 1 cut(s) | 506 |
| BcoDI | GTCTC | 3 cut(s) | 111, 233, 296 |
| BcuI | ACTAGT | 1 cut(s) | 59 |
| BfaI | CTAG | 7 cut(s) | 60, 234, 272, 306, 363, 467, 554 |
| BfuAI | ACCTGC | 1 cut(s) | 431 |
| BglII | AGATCT | 1 cut(s) | 390 |
| BlnI | CCTAGG | 1 cut(s) | 553 |
| Bme1390I | CCNGG | 1 cut(s) | 506 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 540 |
| BmrFI | CCNGG | 1 cut(s) | 506 |
| BmsI | GCATC | 1 cut(s) | 437 |
| BmtI | GCTAGC | 1 cut(s) | 366 |
| BpiI | GAAGAC | 1 cut(s) | 437 |
| Bpu10I | CCTNAGC | 1 cut(s) | 297 |
| BsaAI | YACGTR | 1 cut(s) | 592 |
| BsaI | GGTCTC | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 2 cut(s) | 165, 553 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 171, 298 |
| BseBI | CCWGG | 1 cut(s) | 506 |
| BseDI | CCNNGG | 2 cut(s) | 165, 553 |
| BseGI | GGATG | 3 cut(s) | 25, 285, 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 171, 298 |
| BseMII | CTCAG | 2 cut(s) | 30, 288 |
| BseRI | GAGGAG | 1 cut(s) | 314 |
| BseX3I | CGGCCG | 1 cut(s) | 30 |
| Bsh1236I | CGCG | 3 cut(s) | 179, 267, 407 |
| Bsh1285I | CGRYCG | 1 cut(s) | 33 |
| BshFI | GGCC | 5 cut(s) | 32, 45, 68, 482, 567 |
| BsiEI | CGRYCG | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 29 |
| BslFI | GGGAC | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 171, 298 |
| BsmAI | GTCTC | 3 cut(s) | 111, 233, 296 |
| BsmBI | CGTCTC | 1 cut(s) | 111 |
| BsmFI | GGGAC | 1 cut(s) | 119 |
| BsnI | GGCC | 5 cut(s) | 32, 45, 68, 482, 567 |
| Bso31I | GGTCTC | 1 cut(s) | 233 |
| Bsp143I | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| Bsp68I | TCGCGA | 2 cut(s) | 179, 407 |
| BspACI | CCGC | 3 cut(s) | 289, 426, 596 |
| BspANI | GGCC | 5 cut(s) | 32, 45, 68, 482, 567 |
| BspCNI | CTCAG | 2 cut(s) | 31, 289 |
| BspFNI | CGCG | 3 cut(s) | 179, 267, 407 |
| BspLI | GGNNCC | 1 cut(s) | 540 |
| BspMI | ACCTGC | 1 cut(s) | 431 |
| BspOI | GCTAGC | 1 cut(s) | 366 |
| BspPI | GGATC | 2 cut(s) | 533, 546 |
| BspTNI | GGTCTC | 1 cut(s) | 233 |
| BssECI | CCNNGG | 2 cut(s) | 165, 553 |
| BssMI | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| BssT1I | CCWWGG | 2 cut(s) | 165, 553 |
| Bst2UI | CCWGG | 1 cut(s) | 506 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 106, 244 |
| BstBAI | YACGTR | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 3 cut(s) | 364, 368, 569 |
| BstDEI | CTNAG | 2 cut(s) | 39, 297 |
| BstF5I | GGATG | 3 cut(s) | 25, 285, 460 |
| BstFNI | CGCG | 3 cut(s) | 179, 267, 407 |
| BstKTI | GATC | 5 cut(s) | 183, 277, 318, 393, 541 |
| BstMAI | GTCTC | 3 cut(s) | 111, 233, 296 |
| BstMBI | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| BstMCI | CGRYCG | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 363, 467, 564 |
| BstNI | CCWGG | 1 cut(s) | 506 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstSCI | CCNGG | 1 cut(s) | 504 |
| BstSNI | TACGTA | 1 cut(s) | 592 |
| BstUI | CGCG | 3 cut(s) | 179, 267, 407 |
| BstV2I | GAAGAC | 1 cut(s) | 437 |
| BstX2I | RGATCY | 2 cut(s) | 390, 538 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 106, 575 |
| BstYI | RGATCY | 2 cut(s) | 390, 538 |
| BstZI | CGGCCG | 1 cut(s) | 30 |
| BsuRI | GGCC | 5 cut(s) | 32, 45, 68, 482, 567 |
| BtgZI | GCGATG | 1 cut(s) | 191 |
| BtsCI | GGATG | 3 cut(s) | 25, 285, 460 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 222 |
| BtuMI | TCGCGA | 2 cut(s) | 179, 407 |
| BveI | ACCTGC | 1 cut(s) | 431 |
| Cac8I | GCNNGC | 3 cut(s) | 364, 368, 569 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| CseI | GACGC | 1 cut(s) | 346 |
| Csp6I | GTAC | 3 cut(s) | 333, 589, 593 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 459, 494 |
| CviAII | CATG | 5 cut(s) | 187, 293, 347, 436, 484 |
| CviQI | GTAC | 3 cut(s) | 333, 589, 593 |
| DdeI | CTNAG | 2 cut(s) | 39, 297 |
| DpnI | GATC | 5 cut(s) | 182, 276, 317, 392, 540 |
| DpnII | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| EaeI | YGGCCR | 3 cut(s) | 30, 480, 565 |
| EagI | CGGCCG | 1 cut(s) | 30 |
| EciI | GGCGGA | 1 cut(s) | 278 |
| EclXI | CGGCCG | 1 cut(s) | 30 |
| Eco105I | TACGTA | 1 cut(s) | 592 |
| Eco130I | CCWWGG | 2 cut(s) | 165, 553 |
| Eco147I | AGGCCT | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 1 cut(s) | 233 |
| Eco52I | CGGCCG | 1 cut(s) | 30 |
| EcoRII | CCWGG | 1 cut(s) | 504 |
| EcoT14I | CCWWGG | 2 cut(s) | 165, 553 |
| ErhI | CCWWGG | 2 cut(s) | 165, 553 |
| Esp3I | CGTCTC | 1 cut(s) | 111 |
| FaeI | CATG | 5 cut(s) | 190, 296, 350, 439, 487 |
| FaiI | YATR | 7 cut(s) | 48, 188, 263, 294, 348, 437, 485 |
| FaqI | GGGAC | 1 cut(s) | 119 |
| FatI | CATG | 5 cut(s) | 186, 292, 346, 435, 483 |
| FokI | GGATG | 3 cut(s) | 12, 272, 467 |
| FspBI | CTAG | 7 cut(s) | 60, 234, 272, 306, 363, 467, 554 |
| HaeIII | GGCC | 5 cut(s) | 32, 45, 68, 482, 567 |
| HapII | CCGG | 1 cut(s) | 29 |
| HgaI | GACGC | 1 cut(s) | 346 |
| Hin1II | CATG | 5 cut(s) | 190, 296, 350, 439, 487 |
| HincII | GTYRAC | 1 cut(s) | 55 |
| HindII | GTYRAC | 1 cut(s) | 55 |
| HindIII | AAGCTT | 1 cut(s) | 528 |
| HinfI | GANTC | 1 cut(s) | 22 |
| HpaII | CCGG | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 1 cut(s) | 55 |
| Hpy188I | TCNGA | 4 cut(s) | 10, 328, 384, 433 |
| Hpy188III | TCNNGA | 5 cut(s) | 136, 149, 178, 199, 406 |
| Hpy8I | GTNNAC | 1 cut(s) | 55 |
| Hpy99I | CGWCG | 1 cut(s) | 362 |
| HpyAV | CCTTC | 1 cut(s) | 146 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 106, 244 |
| HpyCH4IV | ACGT | 1 cut(s) | 591 |
| HpyCH4V | TGCA | 1 cut(s) | 487 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 363, 467, 564 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 297 |
| HpySE526I | ACGT | 1 cut(s) | 591 |
| Hsp92II | CATG | 5 cut(s) | 190, 296, 350, 439, 487 |
| Kzo9I | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| LmnI | GCTCC | 1 cut(s) | 155 |
| LweI | GCATC | 1 cut(s) | 437 |
| MaeI | CTAG | 7 cut(s) | 60, 234, 272, 306, 363, 467, 554 |
| MaeII | ACGT | 1 cut(s) | 591 |
| MaeIII | GTNAC | 2 cut(s) | 34, 94 |
| MalI | GATC | 5 cut(s) | 182, 276, 317, 392, 540 |
| MboI | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| MboII | GAAGA | 2 cut(s) | 226, 437 |
| MfeI | CAATTG | 1 cut(s) | 471 |
| MflI | RGATCY | 2 cut(s) | 390, 538 |
| MlsI | TGGCCA | 2 cut(s) | 482, 567 |
| MluCI | AATT | 2 cut(s) | 471, 497 |
| MluNI | TGGCCA | 2 cut(s) | 482, 567 |
| MnlI | CCTC | 7 cut(s) | 34, 118, 172, 292, 333, 391, 469 |
| Mox20I | TGGCCA | 2 cut(s) | 482, 567 |
| MscI | TGGCCA | 2 cut(s) | 482, 567 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| Msp20I | TGGCCA | 2 cut(s) | 482, 567 |
| MspI | CCGG | 1 cut(s) | 29 |
| MspR9I | CCNGG | 1 cut(s) | 506 |
| MunI | CAATTG | 1 cut(s) | 471 |
| MvaI | CCWGG | 1 cut(s) | 506 |
| MvnI | CGCG | 3 cut(s) | 179, 267, 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 363, 467, 564 |
| NdeII | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| NheI | GCTAGC | 1 cut(s) | 362 |
| NlaIII | CATG | 5 cut(s) | 190, 296, 350, 439, 487 |
| NlaIV | GGNNCC | 1 cut(s) | 540 |
| NruI | TCGCGA | 2 cut(s) | 179, 407 |
| NspI | RCATGY | 1 cut(s) | 350 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PceI | AGGCCT | 1 cut(s) | 68 |
| PfeI | GAWTC | 1 cut(s) | 22 |
| Ppu21I | YACGTR | 1 cut(s) | 592 |
| Psp6I | CCWGG | 1 cut(s) | 504 |
| PspGI | CCWGG | 1 cut(s) | 504 |
| PspN4I | GGNNCC | 1 cut(s) | 540 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PsuI | RGATCY | 2 cut(s) | 390, 538 |
| RruI | TCGCGA | 2 cut(s) | 179, 407 |
| RsaI | GTAC | 3 cut(s) | 334, 590, 594 |
| RsaNI | GTAC | 3 cut(s) | 333, 589, 593 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| Sau3AI | GATC | 5 cut(s) | 180, 274, 315, 390, 538 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 1 cut(s) | 506 |
| SfaNI | GCATC | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| SnaBI | TACGTA | 1 cut(s) | 592 |
| SpeI | ACTAGT | 1 cut(s) | 59 |
| Sse9I | AATT | 2 cut(s) | 471, 497 |
| SseBI | AGGCCT | 1 cut(s) | 68 |
| SsiI | CCGC | 3 cut(s) | 289, 426, 596 |
| SspMI | CTAG | 7 cut(s) | 60, 234, 272, 306, 363, 467, 554 |
| StuI | AGGCCT | 1 cut(s) | 68 |
| StyD4I | CCNGG | 1 cut(s) | 504 |
| StyI | CCWWGG | 2 cut(s) | 165, 553 |
| TaaI | ACNGT | 3 cut(s) | 94, 106, 244 |
| TaiI | ACGT | 1 cut(s) | 594 |
| TaqI | TCGA | 1 cut(s) | 198 |
| TasI | AATT | 2 cut(s) | 471, 497 |
| TatI | WGTACW | 1 cut(s) | 332 |
| TfiI | GAWTC | 1 cut(s) | 22 |
| TscAI | CASTG | 2 cut(s) | 111, 229 |
| TspGWI | ACGGA | 1 cut(s) | 135 |
| TspRI | CASTG | 2 cut(s) | 111, 229 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XmaJI | CCTAGG | 1 cut(s) | 553 |
| XspI | CTAG | 7 cut(s) | 60, 234, 272, 306, 363, 467, 554 |