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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 258 |
| AccB1I | GGYRCC | 3 cut(s) | 960, 1085, 1218 |
| AccI | GTMKAC | 1 cut(s) | 1320 |
| AccII | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| AclI | AACGTT | 1 cut(s) | 92 |
| AclWI | GGATC | 4 cut(s) | 669, 693, 746, 759 |
| AcoI | YGGCCR | 1 cut(s) | 778 |
| AcuI | CTGAAG | 1 cut(s) | 360 |
| AfaI | GTAC | 1 cut(s) | 803 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 957, 1150, 1283 |
| AgsI | TTSAA | 3 cut(s) | 104, 200, 736 |
| AjnI | CCWGG | 1 cut(s) | 620 |
| AleI | CACNNNNGTG | 1 cut(s) | 491 |
| AluBI | AGCT | 6 cut(s) | 22, 646, 743, 857, 1106, 1239 |
| AluI | AGCT | 6 cut(s) | 22, 646, 743, 857, 1106, 1239 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 566 |
| Alw26I | GTCTC | 1 cut(s) | 581 |
| Alw44I | GTGCAC | 1 cut(s) | 562 |
| AlwI | GGATC | 4 cut(s) | 669, 693, 746, 759 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 860 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| AoxI | GGCC | 2 cut(s) | 527, 778 |
| ApaLI | GTGCAC | 1 cut(s) | 562 |
| ApeKI | GCWGC | 2 cut(s) | 866, 912 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 599, 631 |
| AspLEI | GCGC | 5 cut(s) | 196, 246, 320, 773, 980 |
| AsuC2I | CCSGG | 2 cut(s) | 1056, 1189 |
| AsuHPI | GGTGA | 1 cut(s) | 359 |
| BaeGI | GKGCMC | 1 cut(s) | 566 |
| BalI | TGGCCA | 1 cut(s) | 780 |
| BamHI | GGATCC | 1 cut(s) | 751 |
| BanI | GGYRCC | 3 cut(s) | 960, 1085, 1218 |
| BanII | GRGCYC | 2 cut(s) | 1074, 1207 |
| BauI | CACGAG | 1 cut(s) | 821 |
| BbsI | GAAGAC | 1 cut(s) | 833 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 566 |
| BbvCI | CCTCAGC | 1 cut(s) | 853 |
| BbvI | GCAGC | 2 cut(s) | 853, 924 |
| BccI | CCATC | 5 cut(s) | 598, 600, 883, 1030, 1163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 157, 191 |
| BciT130I | CCWGG | 1 cut(s) | 622 |
| BcnI | CCSGG | 2 cut(s) | 1056, 1189 |
| BcoDI | GTCTC | 1 cut(s) | 581 |
| BfaI | CTAG | 2 cut(s) | 675, 1158 |
| BfmI | CTRYAG | 2 cut(s) | 489, 714 |
| BfoI | RGCGCY | 2 cut(s) | 197, 774 |
| BisI | GCNGC | 4 cut(s) | 720, 809, 867, 913 |
| BlsI | GCNGC | 4 cut(s) | 721, 810, 868, 914 |
| Bme1390I | CCNGG | 3 cut(s) | 622, 1056, 1189 |
| BmiI | GGNNCC | 4 cut(s) | 753, 962, 1087, 1220 |
| BmrFI | CCNGG | 3 cut(s) | 622, 1056, 1189 |
| BmrI | ACTGGG | 1 cut(s) | 60 |
| BmuI | ACTGGG | 1 cut(s) | 60 |
| BpiI | GAAGAC | 1 cut(s) | 833 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 398, 430 |
| BpmI | CTGGAG | 3 cut(s) | 280, 1127, 1260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 853 |
| BpuMI | CCSGG | 2 cut(s) | 1056, 1189 |
| BsaAI | YACGTR | 1 cut(s) | 805 |
| BsaBI | GATNNNNATC | 1 cut(s) | 408 |
| BsaI | GGTCTC | 1 cut(s) | 581 |
| BsaJI | CCNNGG | 2 cut(s) | 621, 766 |
| BsaWI | WCCGGW | 1 cut(s) | 788 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 957, 1150, 1283 |
| Bse118I | RCCGGY | 2 cut(s) | 1082, 1215 |
| Bse1I | ACTGG | 6 cut(s) | 66, 297, 400, 663, 903, 1031 |
| Bse8I | GATNNNNATC | 1 cut(s) | 408 |
| BseBI | CCWGG | 1 cut(s) | 622 |
| BseDI | CCNNGG | 2 cut(s) | 621, 766 |
| BseGI | GGATG | 1 cut(s) | 785 |
| BseJI | GATNNNNATC | 1 cut(s) | 408 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 957, 1150, 1283 |
| BseMII | CTCAG | 2 cut(s) | 417, 867 |
| BseNI | ACTGG | 6 cut(s) | 66, 297, 400, 663, 903, 1031 |
| BseRI | GAGGAG | 1 cut(s) | 172 |
| BseSI | GKGCMC | 1 cut(s) | 566 |
| BseXI | GCAGC | 2 cut(s) | 853, 924 |
| BseYI | CCCAGC | 1 cut(s) | 13 |
| BsgI | GTGCAG | 2 cut(s) | 124, 220 |
| Bsh1236I | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| Bsh1285I | CGRYCG | 1 cut(s) | 420 |
| BshFI | GGCC | 2 cut(s) | 529, 780 |
| BshNI | GGYRCC | 3 cut(s) | 960, 1085, 1218 |
| BsiEI | CGRYCG | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 566 |
| BsiSI | CCGG | 5 cut(s) | 789, 1055, 1083, 1188, 1216 |
| BslFI | GGGAC | 3 cut(s) | 137, 233, 997 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 957, 1150, 1283 |
| BsmAI | GTCTC | 1 cut(s) | 581 |
| BsmFI | GGGAC | 3 cut(s) | 137, 233, 997 |
| BsmI | GAATGC | 1 cut(s) | 310 |
| BsnI | GGCC | 2 cut(s) | 529, 780 |
| Bso31I | GGTCTC | 1 cut(s) | 581 |
| Bsp1286I | GDGCHC | 4 cut(s) | 180, 566, 1074, 1207 |
| Bsp143I | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| BspANI | GGCC | 2 cut(s) | 529, 780 |
| BspCNI | CTCAG | 2 cut(s) | 418, 866 |
| BspFNI | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| BspLI | GGNNCC | 4 cut(s) | 753, 962, 1087, 1220 |
| BspPI | GGATC | 4 cut(s) | 669, 693, 746, 759 |
| BspT107I | GGYRCC | 3 cut(s) | 960, 1085, 1218 |
| BspTNI | GGTCTC | 1 cut(s) | 581 |
| BsrFI | RCCGGY | 2 cut(s) | 1082, 1215 |
| BsrI | ACTGG | 6 cut(s) | 66, 297, 400, 663, 903, 1031 |
| BssAI | RCCGGY | 2 cut(s) | 1082, 1215 |
| BssECI | CCNNGG | 2 cut(s) | 621, 766 |
| BssMI | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| BssSI | CACGAG | 1 cut(s) | 821 |
| BssT1I | CCWWGG | 1 cut(s) | 766 |
| Bst2BI | CACGAG | 1 cut(s) | 821 |
| Bst2UI | CCWGG | 1 cut(s) | 622 |
| Bst4CI | ACNGT | 3 cut(s) | 481, 493, 862 |
| Bst6I | CTCTTC | 2 cut(s) | 1113, 1246 |
| BstBAI | YACGTR | 1 cut(s) | 805 |
| BstC8I | GCNNGC | 4 cut(s) | 461, 680, 1131, 1264 |
| BstDEI | CTNAG | 2 cut(s) | 426, 853 |
| BstF5I | GGATG | 1 cut(s) | 785 |
| BstFNI | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| BstH2I | RGCGCY | 2 cut(s) | 197, 774 |
| BstHHI | GCGC | 5 cut(s) | 196, 246, 320, 773, 980 |
| BstKTI | GATC | 5 cut(s) | 664, 688, 754, 1095, 1228 |
| BstMAI | GTCTC | 1 cut(s) | 581 |
| BstMBI | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| BstMCI | CGRYCG | 1 cut(s) | 420 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 243, 521, 688, 719, 777, 817, 863 |
| BstNI | CCWGG | 1 cut(s) | 622 |
| BstNSI | RCATGY | 1 cut(s) | 1308 |
| BstSCI | CCNGG | 3 cut(s) | 620, 1054, 1187 |
| BstSFI | CTRYAG | 2 cut(s) | 489, 714 |
| BstSLI | GKGCMC | 1 cut(s) | 566 |
| BstUI | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| BstV1I | GCAGC | 2 cut(s) | 853, 924 |
| BstV2I | GAAGAC | 1 cut(s) | 833 |
| BstX2I | RGATCY | 1 cut(s) | 751 |
| BstYI | RGATCY | 1 cut(s) | 751 |
| BsuRI | GGCC | 2 cut(s) | 529, 780 |
| BtgZI | GCGATG | 1 cut(s) | 578 |
| BtsCI | GGATG | 1 cut(s) | 785 |
| BtsIMutI | CAGTG | 5 cut(s) | 477, 498, 609, 896, 913 |
| Cac8I | GCNNGC | 4 cut(s) | 461, 680, 1131, 1264 |
| CaiI | CAGNNNCTG | 1 cut(s) | 860 |
| CfoI | GCGC | 5 cut(s) | 196, 246, 320, 773, 980 |
| Cfr10I | RCCGGY | 2 cut(s) | 1082, 1215 |
| CseI | GACGC | 3 cut(s) | 106, 361, 680 |
| Csp6I | GTAC | 1 cut(s) | 802 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 178, 213 |
| CviAII | CATG | 2 cut(s) | 574, 1305 |
| CviQI | GTAC | 1 cut(s) | 802 |
| DdeI | CTNAG | 2 cut(s) | 426, 853 |
| DpnI | GATC | 5 cut(s) | 663, 687, 753, 1094, 1227 |
| DpnII | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| EaeI | YGGCCR | 1 cut(s) | 778 |
| Eam1104I | CTCTTC | 2 cut(s) | 1113, 1246 |
| EarI | CTCTTC | 2 cut(s) | 1113, 1246 |
| Eco130I | CCWWGG | 1 cut(s) | 766 |
| Eco147I | AGGCCT | 1 cut(s) | 529 |
| Eco24I | GRGCYC | 2 cut(s) | 1074, 1207 |
| Eco31I | GGTCTC | 1 cut(s) | 581 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 1 cut(s) | 360 |
| EcoRII | CCWGG | 1 cut(s) | 620 |
| EcoT14I | CCWWGG | 1 cut(s) | 766 |
| EcoT38I | GRGCYC | 2 cut(s) | 1074, 1207 |
| ErhI | CCWWGG | 1 cut(s) | 766 |
| FaeI | CATG | 2 cut(s) | 577, 1308 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 17, 49 |
| FaqI | GGGAC | 3 cut(s) | 137, 233, 997 |
| FatI | CATG | 2 cut(s) | 573, 1304 |
| FauI | CCCGC | 5 cut(s) | 153, 249, 973, 1006, 1302 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| FblI | GTMKAC | 1 cut(s) | 1320 |
| Fnu4HI | GCNGC | 4 cut(s) | 720, 809, 867, 913 |
| FokI | GGATG | 1 cut(s) | 772 |
| FriOI | GRGCYC | 2 cut(s) | 1074, 1207 |
| Fsp4HI | GCNGC | 4 cut(s) | 720, 809, 867, 913 |
| FspBI | CTAG | 2 cut(s) | 675, 1158 |
| GlaI | GCGC | 5 cut(s) | 195, 245, 319, 772, 979 |
| GluI | GCNGC | 4 cut(s) | 720, 809, 867, 913 |
| GsaI | CCCAGC | 1 cut(s) | 17 |
| GsuI | CTGGAG | 3 cut(s) | 280, 1127, 1260 |
| HaeII | RGCGCY | 2 cut(s) | 197, 774 |
| HaeIII | GGCC | 2 cut(s) | 529, 780 |
| HapII | CCGG | 5 cut(s) | 789, 1055, 1083, 1188, 1216 |
| HgaI | GACGC | 3 cut(s) | 106, 361, 680 |
| HhaI | GCGC | 5 cut(s) | 196, 246, 320, 773, 980 |
| Hin1II | CATG | 2 cut(s) | 577, 1308 |
| Hin6I | GCGC | 5 cut(s) | 194, 244, 318, 771, 978 |
| HinP1I | GCGC | 5 cut(s) | 194, 244, 318, 771, 978 |
| HincII | GTYRAC | 4 cut(s) | 96, 393, 484, 1321 |
| HindII | GTYRAC | 4 cut(s) | 96, 393, 484, 1321 |
| HindIII | AAGCTT | 1 cut(s) | 741 |
| HinfI | GANTC | 2 cut(s) | 360, 409 |
| HpaII | CCGG | 5 cut(s) | 789, 1055, 1083, 1188, 1216 |
| HphI | GGTGA | 1 cut(s) | 359 |
| Hpy166II | GTNNAC | 6 cut(s) | 96, 189, 393, 484, 564, 1321 |
| Hpy188I | TCNGA | 4 cut(s) | 340, 435, 453, 994 |
| Hpy188III | TCNNGA | 6 cut(s) | 536, 586, 1046, 1096, 1179, 1229 |
| Hpy8I | GTNNAC | 6 cut(s) | 96, 189, 393, 484, 564, 1321 |
| HpyAV | CCTTC | 3 cut(s) | 500, 533, 559 |
| HpyCH4III | ACNGT | 3 cut(s) | 481, 493, 862 |
| HpyCH4IV | ACGT | 4 cut(s) | 92, 438, 804, 1004 |
| HpyCH4V | TGCA | 4 cut(s) | 141, 237, 564, 1304 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 243, 521, 688, 719, 777, 817, 863 |
| HpyF3I | CTNAG | 2 cut(s) | 426, 853 |
| HpySE526I | ACGT | 4 cut(s) | 92, 438, 804, 1004 |
| Hsp92II | CATG | 2 cut(s) | 577, 1308 |
| HspAI | GCGC | 5 cut(s) | 194, 244, 318, 771, 978 |
| Kzo9I | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| LmnI | GCTCC | 1 cut(s) | 542 |
| Lsp1109I | GCAGC | 2 cut(s) | 853, 924 |
| MaeI | CTAG | 2 cut(s) | 675, 1158 |
| MaeII | ACGT | 4 cut(s) | 92, 438, 804, 1004 |
| MaeIII | GTNAC | 4 cut(s) | 299, 349, 1135, 1268 |
| MalI | GATC | 5 cut(s) | 663, 687, 753, 1094, 1227 |
| MboI | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| MflI | RGATCY | 1 cut(s) | 751 |
| MhlI | GDGCHC | 4 cut(s) | 180, 566, 1074, 1207 |
| MlsI | TGGCCA | 1 cut(s) | 780 |
| MluCI | AATT | 2 cut(s) | 70, 702 |
| MluNI | TGGCCA | 1 cut(s) | 780 |
| Mox20I | TGGCCA | 1 cut(s) | 780 |
| MscI | TGGCCA | 1 cut(s) | 780 |
| MseI | TTAA | 2 cut(s) | 215, 447 |
| MslI | CAYNNNNRTG | 1 cut(s) | 491 |
| Msp20I | TGGCCA | 1 cut(s) | 780 |
| MspA1I | CMGCKG | 2 cut(s) | 1133, 1266 |
| MspI | CCGG | 5 cut(s) | 789, 1055, 1083, 1188, 1216 |
| MspR9I | CCNGG | 3 cut(s) | 622, 1056, 1189 |
| Mva1269I | GAATGC | 1 cut(s) | 310 |
| MvaI | CCWGG | 1 cut(s) | 622 |
| MvnI | CGCG | 8 cut(s) | 148, 244, 246, 318, 320, 654, 980, 1297 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 243, 521, 688, 719, 777, 817, 863 |
| NciI | CCSGG | 2 cut(s) | 1056, 1189 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| NlaIII | CATG | 2 cut(s) | 577, 1308 |
| NlaIV | GGNNCC | 4 cut(s) | 753, 962, 1087, 1220 |
| NmuCI | GTSAC | 1 cut(s) | 349 |
| NspI | RCATGY | 1 cut(s) | 1308 |
| OliI | CACNNNNGTG | 1 cut(s) | 491 |
| PceI | AGGCCT | 1 cut(s) | 529 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 310 |
| PfeI | GAWTC | 2 cut(s) | 360, 409 |
| PflFI | GACNNNGTC | 1 cut(s) | 988 |
| PkrI | GCNGC | 4 cut(s) | 721, 810, 868, 914 |
| Ppu21I | YACGTR | 1 cut(s) | 805 |
| PsiI | TTATAA | 1 cut(s) | 258 |
| Psp1406I | AACGTT | 1 cut(s) | 92 |
| Psp6I | CCWGG | 1 cut(s) | 620 |
| PspFI | CCCAGC | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 620 |
| PspN4I | GGNNCC | 4 cut(s) | 753, 962, 1087, 1220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 860 |
| PsuI | RGATCY | 1 cut(s) | 751 |
| PsyI | GACNNNGTC | 1 cut(s) | 988 |
| RsaI | GTAC | 1 cut(s) | 803 |
| RsaNI | GTAC | 1 cut(s) | 802 |
| RseI | CAYNNNNRTG | 1 cut(s) | 491 |
| SalI | GTCGAC | 1 cut(s) | 1319 |
| SaqAI | TTAA | 2 cut(s) | 215, 447 |
| SatI | GCNGC | 4 cut(s) | 720, 809, 867, 913 |
| Sau3AI | GATC | 5 cut(s) | 661, 685, 751, 1092, 1225 |
| ScrFI | CCNGG | 3 cut(s) | 622, 1056, 1189 |
| SduI | GDGCHC | 4 cut(s) | 180, 566, 1074, 1207 |
| SfcI | CTRYAG | 2 cut(s) | 489, 714 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 491 |
| Sse9I | AATT | 2 cut(s) | 70, 702 |
| SseBI | AGGCCT | 1 cut(s) | 529 |
| SspMI | CTAG | 2 cut(s) | 675, 1158 |
| StuI | AGGCCT | 1 cut(s) | 529 |
| StyD4I | CCNGG | 3 cut(s) | 620, 1054, 1187 |
| StyI | CCWWGG | 1 cut(s) | 766 |
| TaaI | ACNGT | 3 cut(s) | 481, 493, 862 |
| TaiI | ACGT | 4 cut(s) | 95, 441, 807, 1007 |
| TaqI | TCGA | 7 cut(s) | 416, 552, 585, 878, 1074, 1207, 1320 |
| TasI | AATT | 2 cut(s) | 70, 702 |
| TauI | GCSGC | 2 cut(s) | 722, 811 |
| TfiI | GAWTC | 2 cut(s) | 360, 409 |
| Tru1I | TTAA | 2 cut(s) | 215, 447 |
| Tru9I | TTAA | 2 cut(s) | 215, 447 |
| TscAI | CASTG | 5 cut(s) | 484, 498, 616, 903, 913 |
| TseFI | GTSAC | 1 cut(s) | 349 |
| TseI | GCWGC | 2 cut(s) | 866, 912 |
| Tsp45I | GTSAC | 1 cut(s) | 349 |
| TspDTI | ATGAA | 1 cut(s) | 921 |
| TspRI | CASTG | 5 cut(s) | 484, 498, 616, 903, 913 |
| Tth111I | GACNNNGTC | 1 cut(s) | 988 |
| VneI | GTGCAC | 1 cut(s) | 562 |
| XceI | RCATGY | 1 cut(s) | 1308 |
| XmiI | GTMKAC | 1 cut(s) | 1320 |
| XspI | CTAG | 2 cut(s) | 675, 1158 |