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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 304 |
| AccII | CGCG | 3 cut(s) | 35, 245, 267 |
| AciI | CCGC | 6 cut(s) | 33, 87, 111, 243, 265, 366 |
| AclWI | GGATC | 1 cut(s) | 175 |
| AdeI | CACNNNGTG | 1 cut(s) | 17 |
| AfaI | GTAC | 1 cut(s) | 58 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 42 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 1 cut(s) | 350 |
| AluI | AGCT | 1 cut(s) | 350 |
| Alw26I | GTCTC | 1 cut(s) | 164 |
| AlwI | GGATC | 1 cut(s) | 175 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 3 cut(s) | 277, 310, 362 |
| AspLEI | GCGC | 2 cut(s) | 335, 346 |
| AsuC2I | CCSGG | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 2 cut(s) | 29, 125 |
| AsuII | TTCGAA | 1 cut(s) | 137 |
| BbvI | GCAGC | 3 cut(s) | 289, 322, 349 |
| BccI | CCATC | 1 cut(s) | 365 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BcnI | CCSGG | 1 cut(s) | 149 |
| BcoDI | GTCTC | 1 cut(s) | 164 |
| BfmI | CTRYAG | 1 cut(s) | 102 |
| BfoI | RGCGCY | 1 cut(s) | 336 |
| BfuAI | ACCTGC | 1 cut(s) | 304 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 341 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 4 cut(s) | 278, 311, 363, 366 |
| BlsI | GCNGC | 4 cut(s) | 279, 312, 364, 367 |
| BmcAI | AGTACT | 1 cut(s) | 58 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 307 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 42 |
| BmiI | GGNNCC | 1 cut(s) | 260 |
| BmrFI | CCNGG | 2 cut(s) | 149, 307 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 11, 43 |
| Bpu14I | TTCGAA | 1 cut(s) | 137 |
| BpuMI | CCSGG | 1 cut(s) | 149 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BseRI | GAGGAG | 1 cut(s) | 251 |
| BseXI | GCAGC | 3 cut(s) | 289, 322, 349 |
| Bsh1236I | CGCG | 3 cut(s) | 35, 245, 267 |
| Bsh1285I | CGRYCG | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BsiEI | CGRYCG | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 149 |
| BsmAI | GTCTC | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp119I | TTCGAA | 1 cut(s) | 137 |
| Bsp143I | GATC | 2 cut(s) | 180, 226 |
| BspACI | CCGC | 6 cut(s) | 33, 87, 111, 243, 265, 366 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspFNI | CGCG | 3 cut(s) | 35, 245, 267 |
| BspLI | GGNNCC | 1 cut(s) | 260 |
| BspMI | ACCTGC | 1 cut(s) | 304 |
| BspPI | GGATC | 1 cut(s) | 175 |
| BspT104I | TTCGAA | 1 cut(s) | 137 |
| BssMI | GATC | 2 cut(s) | 180, 226 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst4CI | ACNGT | 2 cut(s) | 94, 103 |
| Bst6I | CTCTTC | 1 cut(s) | 117 |
| BstBI | TTCGAA | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 3 cut(s) | 70, 74, 348 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstFNI | CGCG | 3 cut(s) | 35, 245, 267 |
| BstH2I | RGCGCY | 1 cut(s) | 336 |
| BstHHI | GCGC | 2 cut(s) | 335, 346 |
| BstKTI | GATC | 2 cut(s) | 183, 229 |
| BstMAI | GTCTC | 1 cut(s) | 164 |
| BstMBI | GATC | 2 cut(s) | 180, 226 |
| BstMCI | CGRYCG | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 230, 341 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstSCI | CCNGG | 2 cut(s) | 147, 305 |
| BstSFI | CTRYAG | 1 cut(s) | 102 |
| BstUI | CGCG | 3 cut(s) | 35, 245, 267 |
| BstV1I | GCAGC | 3 cut(s) | 289, 322, 349 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtgZI | GCGATG | 2 cut(s) | 191, 343 |
| BtsIMutI | CAGTG | 2 cut(s) | 90, 99 |
| BveI | ACCTGC | 1 cut(s) | 304 |
| Cac8I | GCNNGC | 3 cut(s) | 70, 74, 348 |
| CfoI | GCGC | 2 cut(s) | 335, 346 |
| CseI | GACGC | 2 cut(s) | 40, 230 |
| Csp6I | GTAC | 1 cut(s) | 57 |
| CviJI | RGCY | 6 cut(s) | 68, 76, 128, 142, 259, 350 |
| CviKI_1 | RGCY | 6 cut(s) | 68, 76, 128, 142, 259, 350 |
| CviQI | GTAC | 1 cut(s) | 57 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| DpnI | GATC | 2 cut(s) | 182, 228 |
| DpnII | GATC | 2 cut(s) | 180, 226 |
| DraIII | CACNNNGTG | 1 cut(s) | 17 |
| DriI | GACNNNNNGTC | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 1 cut(s) | 117 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 42 |
| EarI | CTCTTC | 1 cut(s) | 117 |
| EciI | GGCGGA | 1 cut(s) | 76 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| FaiI | YATR | 4 cut(s) | 188, 284, 294, 353 |
| Fnu4HI | GCNGC | 4 cut(s) | 278, 311, 363, 366 |
| Fsp4HI | GCNGC | 4 cut(s) | 278, 311, 363, 366 |
| GlaI | GCGC | 2 cut(s) | 334, 345 |
| GluI | GCNGC | 4 cut(s) | 278, 311, 363, 366 |
| HaeII | RGCGCY | 1 cut(s) | 336 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| HapII | CCGG | 1 cut(s) | 149 |
| HgaI | GACGC | 2 cut(s) | 40, 230 |
| HhaI | GCGC | 2 cut(s) | 335, 346 |
| Hin6I | GCGC | 2 cut(s) | 333, 344 |
| HinP1I | GCGC | 2 cut(s) | 333, 344 |
| HincII | GTYRAC | 2 cut(s) | 6, 97 |
| HindII | GTYRAC | 2 cut(s) | 6, 97 |
| HinfI | GANTC | 4 cut(s) | 22, 83, 202, 286 |
| HpaII | CCGG | 1 cut(s) | 149 |
| HphI | GGTGA | 2 cut(s) | 29, 125 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 97 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 253 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 97 |
| HpyAV | CCTTC | 2 cut(s) | 146, 334 |
| HpyCH4III | ACNGT | 2 cut(s) | 94, 103 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 230, 341 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| HspAI | GCGC | 2 cut(s) | 333, 344 |
| Kzo9I | GATC | 2 cut(s) | 180, 226 |
| LmnI | GCTCC | 2 cut(s) | 155, 264 |
| LpnPI | CCDG | 7 cut(s) | 50, 82, 90, 162, 292, 299, 319 |
| Lsp1109I | GCAGC | 3 cut(s) | 289, 322, 349 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 2 cut(s) | 182, 228 |
| MboI | GATC | 2 cut(s) | 180, 226 |
| MboII | GAAGA | 1 cut(s) | 134 |
| MfeI | CAATTG | 1 cut(s) | 174 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MluCI | AATT | 1 cut(s) | 174 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MnlI | CCTC | 4 cut(s) | 34, 112, 118, 272 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| MspI | CCGG | 1 cut(s) | 149 |
| MspR9I | CCNGG | 2 cut(s) | 149, 307 |
| MunI | CAATTG | 1 cut(s) | 174 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MvnI | CGCG | 3 cut(s) | 35, 245, 267 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 230, 341 |
| NciI | CCSGG | 1 cut(s) | 149 |
| NdeII | GATC | 2 cut(s) | 180, 226 |
| NlaIV | GGNNCC | 1 cut(s) | 260 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NspV | TTCGAA | 1 cut(s) | 137 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PfeI | GAWTC | 3 cut(s) | 22, 83, 202 |
| PfoI | TCCNGGA | 1 cut(s) | 147 |
| PkrI | GCNGC | 4 cut(s) | 279, 312, 364, 367 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 1 cut(s) | 260 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| RsaI | GTAC | 1 cut(s) | 58 |
| RsaNI | GTAC | 1 cut(s) | 57 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SatI | GCNGC | 4 cut(s) | 278, 311, 363, 366 |
| Sau3AI | GATC | 2 cut(s) | 180, 226 |
| ScaI | AGTACT | 1 cut(s) | 58 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 2 cut(s) | 149, 307 |
| SetI | ASST | 4 cut(s) | 19, 164, 318, 352 |
| SfcI | CTRYAG | 1 cut(s) | 102 |
| SfuI | TTCGAA | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| Sse9I | AATT | 1 cut(s) | 174 |
| SsiI | CCGC | 6 cut(s) | 33, 87, 111, 243, 265, 366 |
| StyD4I | CCNGG | 2 cut(s) | 147, 305 |
| TaaI | ACNGT | 2 cut(s) | 94, 103 |
| TaqI | TCGA | 3 cut(s) | 29, 137, 273 |
| TasI | AATT | 1 cut(s) | 174 |
| TatI | WGTACW | 1 cut(s) | 56 |
| TauI | GCSGC | 1 cut(s) | 368 |
| TfiI | GAWTC | 3 cut(s) | 22, 83, 202 |
| TscAI | CASTG | 2 cut(s) | 97, 106 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| TseI | GCWGC | 3 cut(s) | 277, 310, 362 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspRI | CASTG | 2 cut(s) | 97, 106 |
| ZrmI | AGTACT | 1 cut(s) | 58 |