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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 317 |
| AccII | CGCG | 1 cut(s) | 77 |
| AciI | CCGC | 2 cut(s) | 237, 580 |
| AclWI | GGATC | 2 cut(s) | 140, 371 |
| AcuI | CTGAAG | 1 cut(s) | 501 |
| AfeI | AGCGCT | 1 cut(s) | 508 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 181 |
| AgsI | TTSAA | 2 cut(s) | 352, 395 |
| AjnI | CCWGG | 2 cut(s) | 111, 436 |
| AluBI | AGCT | 1 cut(s) | 290 |
| AluI | AGCT | 1 cut(s) | 290 |
| AlwI | GGATC | 2 cut(s) | 140, 371 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 380 |
| Ama87I | CYCGRG | 2 cut(s) | 13, 181 |
| Aor51HI | AGCGCT | 1 cut(s) | 508 |
| AoxI | GGCC | 2 cut(s) | 6, 172 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| AspLEI | GCGC | 1 cut(s) | 509 |
| AspS9I | GGNCC | 2 cut(s) | 109, 172 |
| AvaI | CYCGRG | 2 cut(s) | 13, 181 |
| AvaII | GGWCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 1 cut(s) | 188 |
| BbvI | GCAGC | 1 cut(s) | 247 |
| BccI | CCATC | 3 cut(s) | 17, 164, 401 |
| BceAI | ACGGC | 1 cut(s) | 501 |
| BciT130I | CCWGG | 2 cut(s) | 113, 438 |
| BfaI | CTAG | 5 cut(s) | 213, 293, 504, 536, 598 |
| BfmI | CTRYAG | 1 cut(s) | 372 |
| BfoI | RGCGCY | 1 cut(s) | 510 |
| BisI | GCNGC | 1 cut(s) | 261 |
| BlsI | GCNGC | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 438 |
| Bme18I | GGWCC | 1 cut(s) | 109 |
| BmeT110I | CYCGRG | 2 cut(s) | 13, 181 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 172 |
| BmrFI | CCNGG | 2 cut(s) | 113, 438 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| BpmI | CTGGAG | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 3 cut(s) | 160, 180, 324 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 181 |
| Bse3DI | GCAATG | 2 cut(s) | 64, 258 |
| BseBI | CCWGG | 2 cut(s) | 113, 438 |
| BseDI | CCNNGG | 3 cut(s) | 160, 180, 324 |
| BseGI | GGATG | 2 cut(s) | 156, 497 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BseMI | GCAATG | 2 cut(s) | 64, 258 |
| BseXI | GCAGC | 1 cut(s) | 247 |
| BseYI | CCCAGC | 1 cut(s) | 169 |
| BsgI | GTGCAG | 1 cut(s) | 353 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| BshFI | GGCC | 2 cut(s) | 8, 174 |
| BsiHKCI | CYCGRG | 2 cut(s) | 13, 181 |
| BslFI | GGGAC | 1 cut(s) | 296 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 181 |
| BsmFI | GGGAC | 1 cut(s) | 296 |
| BsmI | GAATGC | 1 cut(s) | 214 |
| BsnI | GGCC | 2 cut(s) | 8, 174 |
| BsoBI | CYCGRG | 2 cut(s) | 13, 181 |
| Bsp1286I | GDGCHC | 1 cut(s) | 188 |
| Bsp143I | GATC | 3 cut(s) | 145, 376, 457 |
| Bsp68I | TCGCGA | 1 cut(s) | 77 |
| BspACI | CCGC | 2 cut(s) | 237, 580 |
| BspANI | GGCC | 2 cut(s) | 8, 174 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspPI | GGATC | 2 cut(s) | 140, 371 |
| BsrDI | GCAATG | 2 cut(s) | 64, 258 |
| BssECI | CCNNGG | 3 cut(s) | 160, 180, 324 |
| BssMI | GATC | 3 cut(s) | 145, 376, 457 |
| BssT1I | CCWWGG | 1 cut(s) | 160 |
| Bst2UI | CCWGG | 2 cut(s) | 113, 438 |
| Bst6I | CTCTTC | 3 cut(s) | 57, 332, 520 |
| BstF5I | GGATG | 2 cut(s) | 156, 497 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstH2I | RGCGCY | 1 cut(s) | 510 |
| BstHHI | GCGC | 1 cut(s) | 509 |
| BstKTI | GATC | 3 cut(s) | 148, 379, 460 |
| BstMBI | GATC | 3 cut(s) | 145, 376, 457 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 257 |
| BstNI | CCWGG | 2 cut(s) | 113, 438 |
| BstSCI | CCNGG | 2 cut(s) | 111, 436 |
| BstSFI | CTRYAG | 1 cut(s) | 372 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV1I | GCAGC | 1 cut(s) | 247 |
| BstX2I | RGATCY | 2 cut(s) | 145, 376 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 548 |
| BstYI | RGATCY | 2 cut(s) | 145, 376 |
| BsuRI | GGCC | 2 cut(s) | 8, 174 |
| BtgZI | GCGATG | 1 cut(s) | 420 |
| BtsCI | GGATG | 2 cut(s) | 156, 497 |
| BtuMI | TCGCGA | 1 cut(s) | 77 |
| CaiI | CAGNNNCTG | 1 cut(s) | 380 |
| CfoI | GCGC | 1 cut(s) | 509 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 172 |
| CviAII | CATG | 1 cut(s) | 91 |
| DpnI | GATC | 3 cut(s) | 147, 378, 459 |
| DpnII | GATC | 3 cut(s) | 145, 376, 457 |
| Eam1104I | CTCTTC | 3 cut(s) | 57, 332, 520 |
| EarI | CTCTTC | 3 cut(s) | 57, 332, 520 |
| Eco130I | CCWWGG | 1 cut(s) | 160 |
| Eco24I | GRGCYC | 1 cut(s) | 188 |
| Eco47I | GGWCC | 1 cut(s) | 109 |
| Eco47III | AGCGCT | 1 cut(s) | 508 |
| Eco57I | CTGAAG | 1 cut(s) | 501 |
| Eco88I | CYCGRG | 2 cut(s) | 13, 181 |
| EcoRII | CCWGG | 2 cut(s) | 111, 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 160 |
| EcoT38I | GRGCYC | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 160 |
| FaeI | CATG | 1 cut(s) | 94 |
| FaiI | YATR | 8 cut(s) | 30, 92, 128, 200, 227, 399, 424, 450 |
| FaqI | GGGAC | 1 cut(s) | 296 |
| FatI | CATG | 1 cut(s) | 90 |
| FblI | GTMKAC | 1 cut(s) | 317 |
| Fnu4HI | GCNGC | 1 cut(s) | 261 |
| FokI | GGATG | 2 cut(s) | 143, 504 |
| FriOI | GRGCYC | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 1 cut(s) | 261 |
| FspBI | CTAG | 5 cut(s) | 213, 293, 504, 536, 598 |
| GlaI | GCGC | 1 cut(s) | 508 |
| GluI | GCNGC | 1 cut(s) | 261 |
| GsaI | CCCAGC | 1 cut(s) | 173 |
| GsuI | CTGGAG | 1 cut(s) | 570 |
| HaeII | RGCGCY | 1 cut(s) | 510 |
| HaeIII | GGCC | 2 cut(s) | 8, 174 |
| HhaI | GCGC | 1 cut(s) | 509 |
| Hin1II | CATG | 1 cut(s) | 94 |
| Hin6I | GCGC | 1 cut(s) | 507 |
| HinP1I | GCGC | 1 cut(s) | 507 |
| HincII | GTYRAC | 1 cut(s) | 270 |
| HindII | GTYRAC | 1 cut(s) | 270 |
| HinfI | GANTC | 3 cut(s) | 433, 453, 512 |
| Hpy166II | GTNNAC | 3 cut(s) | 270, 318, 499 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 207 |
| Hpy188III | TCNNGA | 6 cut(s) | 13, 76, 428, 478, 549, 590 |
| Hpy8I | GTNNAC | 3 cut(s) | 270, 318, 499 |
| HpyAV | CCTTC | 3 cut(s) | 56, 356, 549 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 94, 251, 334 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 257 |
| Hsp92II | CATG | 1 cut(s) | 94 |
| HspAI | GCGC | 1 cut(s) | 507 |
| Kzo9I | GATC | 3 cut(s) | 145, 376, 457 |
| LmnI | GCTCC | 1 cut(s) | 410 |
| Lsp1109I | GCAGC | 1 cut(s) | 247 |
| LweI | GCATC | 1 cut(s) | 44 |
| MaeI | CTAG | 5 cut(s) | 213, 293, 504, 536, 598 |
| MalI | GATC | 3 cut(s) | 147, 378, 459 |
| MboI | GATC | 3 cut(s) | 145, 376, 457 |
| MboII | GAAGA | 3 cut(s) | 44, 349, 507 |
| MflI | RGATCY | 2 cut(s) | 145, 376 |
| MhlI | GDGCHC | 1 cut(s) | 188 |
| MluCI | AATT | 2 cut(s) | 104, 442 |
| MlyI | GAGTC | 2 cut(s) | 447, 506 |
| MnlI | CCTC | 6 cut(s) | 83, 190, 213, 274, 334, 545 |
| MspR9I | CCNGG | 2 cut(s) | 113, 438 |
| Mva1269I | GAATGC | 1 cut(s) | 214 |
| MvaI | CCWGG | 2 cut(s) | 113, 438 |
| MvnI | CGCG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 257 |
| NdeII | GATC | 3 cut(s) | 145, 376, 457 |
| NlaIII | CATG | 1 cut(s) | 94 |
| NruI | TCGCGA | 1 cut(s) | 77 |
| PaeR7I | CTCGAG | 1 cut(s) | 13 |
| PctI | GAATGC | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 433 |
| PfoI | TCCNGGA | 1 cut(s) | 436 |
| PkrI | GCNGC | 1 cut(s) | 262 |
| PleI | GAGTC | 2 cut(s) | 447, 506 |
| PpsI | GAGTC | 2 cut(s) | 447, 506 |
| Psp6I | CCWGG | 2 cut(s) | 111, 436 |
| PspFI | CCCAGC | 1 cut(s) | 169 |
| PspGI | CCWGG | 2 cut(s) | 111, 436 |
| PspPI | GGNCC | 2 cut(s) | 109, 172 |
| PstNI | CAGNNNCTG | 1 cut(s) | 380 |
| PsuI | RGATCY | 2 cut(s) | 145, 376 |
| RruI | TCGCGA | 1 cut(s) | 77 |
| SatI | GCNGC | 1 cut(s) | 261 |
| Sau3AI | GATC | 3 cut(s) | 145, 376, 457 |
| Sau96I | GGNCC | 2 cut(s) | 109, 172 |
| SchI | GAGTC | 2 cut(s) | 447, 506 |
| ScrFI | CCNGG | 2 cut(s) | 113, 438 |
| SduI | GDGCHC | 1 cut(s) | 188 |
| SetI | ASST | 6 cut(s) | 75, 126, 205, 225, 292, 465 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SfcI | CTRYAG | 1 cut(s) | 372 |
| Sfr274I | CTCGAG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 109 |
| SlaI | CTCGAG | 1 cut(s) | 13 |
| SmlI | CTYRAG | 1 cut(s) | 13 |
| SmoI | CTYRAG | 1 cut(s) | 13 |
| Sse9I | AATT | 2 cut(s) | 104, 442 |
| SsiI | CCGC | 2 cut(s) | 237, 580 |
| SspMI | CTAG | 5 cut(s) | 213, 293, 504, 536, 598 |
| StyD4I | CCNGG | 2 cut(s) | 111, 436 |
| StyI | CCWWGG | 1 cut(s) | 160 |
| TaqI | TCGA | 2 cut(s) | 14, 456 |
| TasI | AATT | 2 cut(s) | 104, 442 |
| TfiI | GAWTC | 1 cut(s) | 433 |
| TseI | GCWGC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 3 cut(s) | 75, 143, 534 |
| VpaK11BI | GGWCC | 1 cut(s) | 109 |
| XhoI | CTCGAG | 1 cut(s) | 13 |
| XmiI | GTMKAC | 1 cut(s) | 317 |
| XspI | CTAG | 5 cut(s) | 213, 293, 504, 536, 598 |