Rroxscaffold_6G00405640

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000057
Physical Location & Seq
Forward (+)
28083939 .. 28085213
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405640.1

Sequence Viewer

Length: 723 bp
ATGGGGCGAGAATGTTTACCAAGAGCTCCCGGGAATTACTATGGGATTGATCGGACGGCACTCCAATCAAGATCACCACTTTGGCCAAGGATGTGTCCGTACTGGAATTACACTTCAACAGCCCCAATATTCCCGGGTCGTTCAAATGGGAGGAACGGCGACTACCGGCCCATGCGATGCCTCCTTTGCAAACGGCCCATCGACGATGGCCGCACCTCCACCTCCTCCTCCCCGGCCCGGAGTTATGTGCGACGTGAAGAGGTGGAGGAGATGATTAGGTTGGCTAACCCCGTGGCCCACCTCGATGGGGTTCCGGATTCGAAGGCTAAACCGAACATGGTTCTCGCCGTAAAGAGAATTGGGTTAAGCCGGCAATCAAGGGCTTGGAGCCGCGCCAACGAAAGAAGCGAGCATGGTAGCATGATACGGTCCATGGGCGAGCTCATTGCGAGAGCCGACAGAAGAAAGAACCCCGCCTTGAAGAAGCGGTTGAAAATAACCAAGGAACCGGTCAAGCTCAAGTCCGTAGCCTTCACCAAACCCGAGTTTGCGACATATACTTATGACGCCAATAAAGCGCATGAGATATTAGATGAAATGATAGCCGCGAAGATGGTAAAGACCGACTTTGGACCCTTTCCTCGCCCCGATCGGCTAAAAGGAAAAAAGTATTGCAAATTCCATAATCGTGGAACAACAACACGGCCGATTGTGTTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.37

Weight (kDa)

10.3

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 393, 608
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 5 cut(s) 211, 391, 474, 487, 606
AcoI YGGCCR 3 cut(s) 83, 208, 704
AcsI RAATTY 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 237, 307
AgeI ACCGGT 1 cut(s) 508
AgsI TTSAA 4 cut(s) 117, 144, 481, 493
AjiI CACGTC 1 cut(s) 254
AluBI AGCT 4 cut(s) 26, 442, 517, 720
AluI AGCT 4 cut(s) 26, 442, 517, 720
Alw21I GWGCWC 2 cut(s) 28, 444
Ama87I CYCGRG 3 cut(s) 29, 133, 542
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 7 cut(s) 83, 167, 194, 208, 234, 294, 704
ApoI RAATTY 1 cut(s) 677
AsiGI ACCGGT 1 cut(s) 508
AspLEI GCGC 2 cut(s) 395, 580
AspS9I GGNCC 6 cut(s) 168, 195, 235, 295, 429, 632
AsuC2I CCSGG 6 cut(s) 30, 31, 134, 135, 233, 238
AsuHPI GGTGA 2 cut(s) 66, 526
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 3 cut(s) 29, 133, 542
AvaII GGWCC 2 cut(s) 429, 632
BalI TGGCCA 1 cut(s) 85
BanII GRGCYC 2 cut(s) 28, 444
Bbv12I GWGCWC 2 cut(s) 28, 444
BccI CCATC 4 cut(s) 200, 206, 299, 607
BceAI ACGGC 5 cut(s) 72, 172, 209, 332, 719
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BcnI CCSGG 6 cut(s) 30, 31, 134, 135, 233, 238
BisI GCNGC 3 cut(s) 211, 391, 606
BlsI GCNGC 3 cut(s) 212, 392, 607
Bme1390I CCNGG 6 cut(s) 30, 31, 134, 135, 233, 238
Bme18I GGWCC 2 cut(s) 429, 632
BmeT110I CYCGRG 3 cut(s) 29, 133, 542
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 6 cut(s) 168, 195, 235, 295, 429, 632
BmiI GGNNCC 4 cut(s) 312, 389, 507, 634
BmrFI CCNGG 6 cut(s) 30, 31, 134, 135, 233, 238
BmsI GCATC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 6 cut(s) 30, 31, 134, 135, 233, 238
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 7 cut(s) 29, 86, 133, 231, 291, 432, 501
BsaWI WCCGGW 2 cut(s) 313, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 307
Bse118I RCCGGY 3 cut(s) 165, 369, 508
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 444
BseAI TCCGGA 1 cut(s) 313
BseDI CCNNGG 7 cut(s) 29, 86, 133, 231, 291, 432, 501
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 237, 307
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 3 cut(s) 214, 217, 281
BseX3I CGGCCG 1 cut(s) 704
Bsh1236I CGCG 2 cut(s) 393, 608
Bsh1285I CGRYCG 2 cut(s) 652, 707
BshFI GGCC 7 cut(s) 85, 169, 196, 210, 236, 296, 706
BshTI ACCGGT 1 cut(s) 508
BsiEI CGRYCG 2 cut(s) 652, 707
BsiHKAI GWGCWC 2 cut(s) 28, 444
BsiHKCI CYCGRG 3 cut(s) 29, 133, 542
BsiSI CCGG 8 cut(s) 30, 134, 166, 233, 238, 314, 370, 509
BslI CCNNNNNNNGG 2 cut(s) 237, 307
BsnI GGCC 7 cut(s) 85, 169, 196, 210, 236, 296, 706
BsoBI CYCGRG 3 cut(s) 29, 133, 542
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 28, 444
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 3 cut(s) 49, 71, 649
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 5 cut(s) 211, 391, 474, 487, 606
BspANI GGCC 7 cut(s) 85, 169, 196, 210, 236, 296, 706
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 393, 608
BspLI GGNNCC 4 cut(s) 312, 389, 507, 634
BspT104I TTCGAA 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 3 cut(s) 165, 369, 508
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 3 cut(s) 165, 369, 508
BssECI CCNNGG 7 cut(s) 29, 86, 133, 231, 291, 432, 501
BssMI GATC 3 cut(s) 49, 71, 649
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 3 cut(s) 86, 432, 501
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 371, 410, 440
BstDSI CCRYGG 2 cut(s) 291, 432
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 2 cut(s) 393, 608
BstHHI GCGC 2 cut(s) 395, 580
BstKTI GATC 3 cut(s) 52, 74, 652
BstMBI GATC 3 cut(s) 49, 71, 649
BstMCI CGRYCG 2 cut(s) 652, 707
BstMWI GCNNNNNNNGC 2 cut(s) 186, 575
BstSCI CCNGG 6 cut(s) 28, 29, 132, 133, 231, 236
BstUI CGCG 2 cut(s) 393, 608
BstXI CCANNNNNNTGG 2 cut(s) 305, 689
BstZI CGGCCG 1 cut(s) 704
BsuRI GGCC 7 cut(s) 85, 169, 196, 210, 236, 296, 706
BtgI CCRYGG 2 cut(s) 291, 432
BtgZI GCGATG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 371, 410, 440
CfoI GCGC 2 cut(s) 395, 580
Cfr10I RCCGGY 3 cut(s) 165, 369, 508
Cfr13I GGNCC 6 cut(s) 168, 195, 235, 295, 429, 632
Cfr9I CCCGGG 2 cut(s) 29, 133
CseI GACGC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 100
CspAI ACCGGT 1 cut(s) 508
CviAII CATG 6 cut(s) 172, 337, 413, 421, 433, 581
CviQI GTAC 1 cut(s) 100
DpnI GATC 3 cut(s) 51, 73, 651
DpnII GATC 3 cut(s) 49, 71, 649
EaeI YGGCCR 3 cut(s) 83, 208, 704
EagI CGGCCG 1 cut(s) 704
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Ecl136II GAGCTC 2 cut(s) 26, 442
EclXI CGGCCG 1 cut(s) 704
Eco130I CCWWGG 3 cut(s) 86, 432, 501
Eco24I GRGCYC 2 cut(s) 28, 444
Eco47I GGWCC 2 cut(s) 429, 632
Eco52I CGGCCG 1 cut(s) 704
Eco53kI GAGCTC 2 cut(s) 26, 442
Eco88I CYCGRG 3 cut(s) 29, 133, 542
EcoICRI GAGCTC 2 cut(s) 26, 442
EcoT14I CCWWGG 3 cut(s) 86, 432, 501
EcoT38I GRGCYC 2 cut(s) 28, 444
ErhI CCWWGG 3 cut(s) 86, 432, 501
FaeI CATG 6 cut(s) 175, 340, 416, 424, 436, 584
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FatI CATG 6 cut(s) 171, 336, 412, 420, 432, 580
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 211, 391, 606
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 2 cut(s) 28, 444
Fsp4HI GCNGC 3 cut(s) 211, 391, 606
GlaI GCGC 2 cut(s) 394, 579
GluI GCNGC 3 cut(s) 211, 391, 606
HaeIII GGCC 7 cut(s) 85, 169, 196, 210, 236, 296, 706
HapII CCGG 8 cut(s) 30, 134, 166, 233, 238, 314, 370, 509
HgaI GACGC 1 cut(s) 575
HhaI GCGC 2 cut(s) 395, 580
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 6 cut(s) 175, 340, 416, 424, 436, 584
Hin6I GCGC 2 cut(s) 393, 578
HinP1I GCGC 2 cut(s) 393, 578
HinfI GANTC 1 cut(s) 317
HpaII CCGG 8 cut(s) 30, 134, 166, 233, 238, 314, 370, 509
HphI GGTGA 2 cut(s) 66, 526
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 69, 314
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 2 cut(s) 206, 255
HpyAV CCTTC 2 cut(s) 316, 541
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 189, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 575
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 6 cut(s) 175, 340, 416, 424, 436, 584
HspAI GCGC 2 cut(s) 393, 578
Kpn2I TCCGGA 1 cut(s) 313
KroI GCCGGC 1 cut(s) 369
KroNI GCCGGC 1 cut(s) 371
Kzo9I GATC 3 cut(s) 49, 71, 649
LmnI GCTCC 2 cut(s) 31, 387
LpnPI CCDG 9 cut(s) 43, 88, 147, 179, 246, 251, 327, 383, 522
LweI GCATC 1 cut(s) 167
MaeII ACGT 1 cut(s) 253
MalI GATC 3 cut(s) 51, 73, 651
MboI GATC 3 cut(s) 49, 71, 649
MboII GAAGA 4 cut(s) 269, 474, 493, 622
MhlI GDGCHC 2 cut(s) 28, 444
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 4 cut(s) 34, 106, 357, 677
MluNI TGGCCA 1 cut(s) 85
Mox20I TGGCCA 1 cut(s) 85
MroI TCCGGA 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 365, 716
MslI CAYNNNNRTG 2 cut(s) 303, 687
Msp20I TGGCCA 1 cut(s) 85
MspI CCGG 8 cut(s) 30, 134, 166, 233, 238, 314, 370, 509
MspR9I CCNGG 6 cut(s) 30, 31, 134, 135, 233, 238
MvnI CGCG 2 cut(s) 393, 608
MwoI GCNNNNNNNGC 2 cut(s) 186, 575
NaeI GCCGGC 1 cut(s) 371
NciI CCSGG 6 cut(s) 30, 31, 134, 135, 233, 238
NcoI CCATGG 1 cut(s) 432
NdeII GATC 3 cut(s) 49, 71, 649
NgoMIV GCCGGC 1 cut(s) 369
NlaIII CATG 6 cut(s) 175, 340, 416, 424, 436, 584
NlaIV GGNNCC 4 cut(s) 312, 389, 507, 634
NspV TTCGAA 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PdiI GCCGGC 1 cut(s) 371
PfeI GAWTC 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 3 cut(s) 212, 392, 607
Ple19I CGATCG 1 cut(s) 652
Psp124BI GAGCTC 2 cut(s) 28, 444
PspN4I GGNNCC 4 cut(s) 312, 389, 507, 634
PspPI GGNCC 6 cut(s) 168, 195, 235, 295, 429, 632
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PvuI CGATCG 1 cut(s) 652
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 303, 687
SacI GAGCTC 2 cut(s) 28, 444
SaqAI TTAA 2 cut(s) 365, 716
SatI GCNGC 3 cut(s) 211, 391, 606
Sau3AI GATC 3 cut(s) 49, 71, 649
Sau96I GGNCC 6 cut(s) 168, 195, 235, 295, 429, 632
ScrFI CCNGG 6 cut(s) 30, 31, 134, 135, 233, 238
SduI GDGCHC 2 cut(s) 28, 444
SfaNI GCATC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 2 cut(s) 429, 632
SmaI CCCGGG 2 cut(s) 31, 135
SmiMI CAYNNNNRTG 2 cut(s) 303, 687
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 34, 106, 357, 677
SsiI CCGC 5 cut(s) 211, 391, 474, 487, 606
SspI AATATT 1 cut(s) 129
SstI GAGCTC 2 cut(s) 28, 444
StyD4I CCNGG 6 cut(s) 28, 29, 132, 133, 231, 236
StyI CCWWGG 3 cut(s) 86, 432, 501
TaaI ACNGT 1 cut(s) 429
TaiI ACGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 201, 303, 320
TaqII GACCGA 1 cut(s) 638
TasI AATT 4 cut(s) 34, 106, 357, 677
TauI GCSGC 3 cut(s) 213, 393, 608
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 365, 716
Tru9I TTAA 2 cut(s) 365, 716
TspDTI ATGAA 1 cut(s) 609
TspGWI ACGGA 2 cut(s) 87, 514
TspMI CCCGGG 2 cut(s) 29, 133
VpaK11BI GGWCC 2 cut(s) 429, 632
XapI RAATTY 1 cut(s) 677
XmaI CCCGGG 2 cut(s) 29, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.