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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 72 |
| AccII | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| AciI | CCGC | 7 cut(s) | 12, 31, 33, 36, 105, 159, 353 |
| AclI | AACGTT | 1 cut(s) | 591 |
| AfaI | GTAC | 1 cut(s) | 505 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 69, 70, 179 |
| AgeI | ACCGGT | 1 cut(s) | 210 |
| AgsI | TTSAA | 2 cut(s) | 382, 476 |
| AluBI | AGCT | 3 cut(s) | 95, 424, 560 |
| AluI | AGCT | 3 cut(s) | 95, 424, 560 |
| Alw21I | GWGCWC | 2 cut(s) | 225, 437 |
| Alw26I | GTCTC | 1 cut(s) | 330 |
| AoxI | GGCC | 3 cut(s) | 185, 203, 525 |
| ApeKI | GCWGC | 3 cut(s) | 392, 560, 563 |
| AsiGI | ACCGGT | 1 cut(s) | 210 |
| AspLEI | GCGC | 3 cut(s) | 41, 397, 568 |
| AspS9I | GGNCC | 3 cut(s) | 98, 169, 190 |
| AsuC2I | CCSGG | 2 cut(s) | 24, 71 |
| AsuHPI | GGTGA | 4 cut(s) | 200, 211, 342, 441 |
| AvaII | GGWCC | 3 cut(s) | 98, 169, 190 |
| BbsI | GAAGAC | 1 cut(s) | 25 |
| Bbv12I | GWGCWC | 2 cut(s) | 225, 437 |
| BbvI | GCAGC | 3 cut(s) | 404, 547, 575 |
| BccI | CCATC | 6 cut(s) | 329, 337, 364, 409, 477, 493 |
| BceAI | ACGGC | 1 cut(s) | 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 264, 298 |
| BcnI | CCSGG | 2 cut(s) | 24, 71 |
| BcoDI | GTCTC | 1 cut(s) | 330 |
| BfaI | CTAG | 3 cut(s) | 128, 141, 327 |
| BfmI | CTRYAG | 1 cut(s) | 561 |
| BfoI | RGCGCY | 1 cut(s) | 42 |
| BisI | GCNGC | 5 cut(s) | 34, 37, 393, 561, 564 |
| BlsI | GCNGC | 5 cut(s) | 35, 38, 394, 562, 565 |
| Bme1390I | CCNGG | 2 cut(s) | 24, 71 |
| Bme18I | GGWCC | 3 cut(s) | 98, 169, 190 |
| BmgT120I | GGNCC | 3 cut(s) | 98, 169, 190 |
| BmiI | GGNNCC | 2 cut(s) | 109, 171 |
| BmrFI | CCNGG | 2 cut(s) | 24, 71 |
| BmsI | GCATC | 2 cut(s) | 219, 256 |
| BpiI | GAAGAC | 1 cut(s) | 25 |
| BpuMI | CCSGG | 2 cut(s) | 24, 71 |
| BsaJI | CCNNGG | 4 cut(s) | 31, 70, 362, 528 |
| BsaWI | WCCGGW | 1 cut(s) | 210 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 69, 70, 179 |
| Bse118I | RCCGGY | 1 cut(s) | 210 |
| BseDI | CCNNGG | 4 cut(s) | 31, 70, 362, 528 |
| BseGI | GGATG | 4 cut(s) | 247, 321, 356, 420 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 69, 70, 179 |
| BseXI | GCAGC | 3 cut(s) | 404, 547, 575 |
| Bsh1236I | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| Bsh1285I | CGRYCG | 1 cut(s) | 401 |
| BshFI | GGCC | 3 cut(s) | 187, 205, 527 |
| BshTI | ACCGGT | 1 cut(s) | 210 |
| BsiEI | CGRYCG | 1 cut(s) | 401 |
| BsiHKAI | GWGCWC | 2 cut(s) | 225, 437 |
| BsiSI | CCGG | 4 cut(s) | 24, 70, 188, 211 |
| BslFI | GGGAC | 2 cut(s) | 155, 176 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 69, 70, 179 |
| BsmAI | GTCTC | 1 cut(s) | 330 |
| BsmFI | GGGAC | 2 cut(s) | 155, 176 |
| BsnI | GGCC | 3 cut(s) | 187, 205, 527 |
| Bsp1286I | GDGCHC | 2 cut(s) | 225, 437 |
| Bsp143I | GATC | 1 cut(s) | 402 |
| Bsp68I | TCGCGA | 1 cut(s) | 227 |
| BspACI | CCGC | 7 cut(s) | 12, 31, 33, 36, 105, 159, 353 |
| BspANI | GGCC | 3 cut(s) | 187, 205, 527 |
| BspFNI | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| BspLI | GGNNCC | 2 cut(s) | 109, 171 |
| BspMAI | CTGCAG | 1 cut(s) | 565 |
| BsrFI | RCCGGY | 1 cut(s) | 210 |
| BssAI | RCCGGY | 1 cut(s) | 210 |
| BssECI | CCNNGG | 4 cut(s) | 31, 70, 362, 528 |
| BssMI | GATC | 1 cut(s) | 402 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst6I | CTCTTC | 1 cut(s) | 259 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 1 cut(s) | 425 |
| BstDSI | CCRYGG | 2 cut(s) | 31, 528 |
| BstF5I | GGATG | 4 cut(s) | 247, 321, 356, 420 |
| BstFNI | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| BstH2I | RGCGCY | 1 cut(s) | 42 |
| BstHHI | GCGC | 3 cut(s) | 41, 397, 568 |
| BstKTI | GATC | 1 cut(s) | 405 |
| BstMAI | GTCTC | 1 cut(s) | 330 |
| BstMBI | GATC | 1 cut(s) | 402 |
| BstMCI | CGRYCG | 1 cut(s) | 401 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 33, 229 |
| BstSCI | CCNGG | 2 cut(s) | 22, 69 |
| BstSFI | CTRYAG | 1 cut(s) | 561 |
| BstUI | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| BstV1I | GCAGC | 3 cut(s) | 404, 547, 575 |
| BstV2I | GAAGAC | 1 cut(s) | 25 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 310 |
| BsuRI | GGCC | 3 cut(s) | 187, 205, 527 |
| BtgI | CCRYGG | 2 cut(s) | 31, 528 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 4 cut(s) | 247, 321, 356, 420 |
| BtuMI | TCGCGA | 1 cut(s) | 227 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| CfoI | GCGC | 3 cut(s) | 41, 397, 568 |
| Cfr10I | RCCGGY | 1 cut(s) | 210 |
| Cfr13I | GGNCC | 3 cut(s) | 98, 169, 190 |
| Cfr42I | CCGCGG | 1 cut(s) | 34 |
| Csp6I | GTAC | 1 cut(s) | 504 |
| CspAI | ACCGGT | 1 cut(s) | 210 |
| CviQI | GTAC | 1 cut(s) | 504 |
| DdeI | CTNAG | 1 cut(s) | 425 |
| DpnI | GATC | 1 cut(s) | 404 |
| DpnII | GATC | 1 cut(s) | 402 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 72 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 72 |
| Eam1104I | CTCTTC | 1 cut(s) | 259 |
| EarI | CTCTTC | 1 cut(s) | 259 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco147I | AGGCCT | 1 cut(s) | 205 |
| Eco32I | GATATC | 1 cut(s) | 444 |
| Eco47I | GGWCC | 3 cut(s) | 98, 169, 190 |
| EcoO109I | RGGNCCY | 1 cut(s) | 169 |
| EcoRV | GATATC | 1 cut(s) | 444 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaiI | YATR | 1 cut(s) | 81 |
| FaqI | GGGAC | 2 cut(s) | 155, 176 |
| FauI | CCCGC | 1 cut(s) | 152 |
| Fnu4HI | GCNGC | 5 cut(s) | 34, 37, 393, 561, 564 |
| FokI | GGATG | 4 cut(s) | 234, 308, 343, 427 |
| Fsp4HI | GCNGC | 5 cut(s) | 34, 37, 393, 561, 564 |
| FspBI | CTAG | 3 cut(s) | 128, 141, 327 |
| GlaI | GCGC | 3 cut(s) | 40, 396, 567 |
| GluI | GCNGC | 5 cut(s) | 34, 37, 393, 561, 564 |
| HaeII | RGCGCY | 1 cut(s) | 42 |
| HaeIII | GGCC | 3 cut(s) | 187, 205, 527 |
| HapII | CCGG | 4 cut(s) | 24, 70, 188, 211 |
| HhaI | GCGC | 3 cut(s) | 41, 397, 568 |
| Hin6I | GCGC | 3 cut(s) | 39, 395, 566 |
| HinP1I | GCGC | 3 cut(s) | 39, 395, 566 |
| HinfI | GANTC | 2 cut(s) | 347, 599 |
| HpaII | CCGG | 4 cut(s) | 24, 70, 188, 211 |
| HphI | GGTGA | 4 cut(s) | 200, 211, 342, 441 |
| Hpy166II | GTNNAC | 3 cut(s) | 47, 506, 589 |
| Hpy188III | TCNNGA | 4 cut(s) | 63, 172, 226, 603 |
| Hpy8I | GTNNAC | 3 cut(s) | 47, 506, 589 |
| HpyAV | CCTTC | 5 cut(s) | 177, 487, 511, 517, 552 |
| HpyCH4IV | ACGT | 2 cut(s) | 478, 591 |
| HpyCH4V | TGCA | 2 cut(s) | 232, 563 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 33, 229 |
| HpyF3I | CTNAG | 1 cut(s) | 425 |
| HpySE526I | ACGT | 2 cut(s) | 478, 591 |
| HspAI | GCGC | 3 cut(s) | 39, 395, 566 |
| KspI | CCGCGG | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 402 |
| LpnPI | CCDG | 6 cut(s) | 37, 81, 83, 201, 224, 346 |
| Lsp1109I | GCAGC | 3 cut(s) | 404, 547, 575 |
| LweI | GCATC | 2 cut(s) | 219, 256 |
| MaeI | CTAG | 3 cut(s) | 128, 141, 327 |
| MaeII | ACGT | 2 cut(s) | 478, 591 |
| MaeIII | GTNAC | 2 cut(s) | 256, 348 |
| MalI | GATC | 1 cut(s) | 404 |
| MboI | GATC | 1 cut(s) | 402 |
| MboII | GAAGA | 5 cut(s) | 30, 164, 276, 438, 464 |
| MhlI | GDGCHC | 2 cut(s) | 225, 437 |
| MluCI | AATT | 2 cut(s) | 373, 534 |
| MlyI | GAGTC | 2 cut(s) | 356, 593 |
| MnlI | CCTC | 8 cut(s) | 108, 173, 195, 216, 230, 260, 492, 572 |
| MseI | TTAA | 1 cut(s) | 594 |
| MslI | CAYNNNNRTG | 1 cut(s) | 252 |
| MspA1I | CMGCKG | 1 cut(s) | 33 |
| MspI | CCGG | 4 cut(s) | 24, 70, 188, 211 |
| MspR9I | CCNGG | 2 cut(s) | 24, 71 |
| MvnI | CGCG | 4 cut(s) | 33, 227, 397, 568 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 33, 229 |
| NciI | CCSGG | 2 cut(s) | 24, 71 |
| NdeII | GATC | 1 cut(s) | 402 |
| NlaIV | GGNNCC | 2 cut(s) | 109, 171 |
| NmuCI | GTSAC | 2 cut(s) | 256, 348 |
| NruI | TCGCGA | 1 cut(s) | 227 |
| PceI | AGGCCT | 1 cut(s) | 205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 268 |
| PflFI | GACNNNGTC | 1 cut(s) | 167 |
| PinAI | ACCGGT | 1 cut(s) | 210 |
| PkrI | GCNGC | 5 cut(s) | 35, 38, 394, 562, 565 |
| PleI | GAGTC | 2 cut(s) | 355, 593 |
| PpsI | GAGTC | 2 cut(s) | 355, 593 |
| PpuMI | RGGWCCY | 1 cut(s) | 169 |
| Psp1406I | AACGTT | 1 cut(s) | 591 |
| Psp5II | RGGWCCY | 1 cut(s) | 169 |
| PspN4I | GGNNCC | 2 cut(s) | 109, 171 |
| PspPI | GGNCC | 3 cut(s) | 98, 169, 190 |
| PspPPI | RGGWCCY | 1 cut(s) | 169 |
| PstI | CTGCAG | 1 cut(s) | 565 |
| PsyI | GACNNNGTC | 1 cut(s) | 167 |
| RruI | TCGCGA | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 505 |
| RsaNI | GTAC | 1 cut(s) | 504 |
| RseI | CAYNNNNRTG | 1 cut(s) | 252 |
| SacII | CCGCGG | 1 cut(s) | 34 |
| SaqAI | TTAA | 1 cut(s) | 594 |
| SatI | GCNGC | 5 cut(s) | 34, 37, 393, 561, 564 |
| Sau3AI | GATC | 1 cut(s) | 402 |
| Sau96I | GGNCC | 3 cut(s) | 98, 169, 190 |
| SchI | GAGTC | 2 cut(s) | 356, 593 |
| ScrFI | CCNGG | 2 cut(s) | 24, 71 |
| SduI | GDGCHC | 2 cut(s) | 225, 437 |
| SetI | ASST | 9 cut(s) | 97, 171, 195, 271, 426, 481, 562, 583, 594 |
| SfaNI | GCATC | 2 cut(s) | 219, 256 |
| SfcI | CTRYAG | 1 cut(s) | 561 |
| Sfr303I | CCGCGG | 1 cut(s) | 34 |
| SgrAI | CRCCGGYG | 1 cut(s) | 210 |
| SgrBI | CCGCGG | 1 cut(s) | 34 |
| SinI | GGWCC | 3 cut(s) | 98, 169, 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 252 |
| Sse9I | AATT | 2 cut(s) | 373, 534 |
| SseBI | AGGCCT | 1 cut(s) | 205 |
| SsiI | CCGC | 7 cut(s) | 12, 31, 33, 36, 105, 159, 353 |
| SspMI | CTAG | 3 cut(s) | 128, 141, 327 |
| StuI | AGGCCT | 1 cut(s) | 205 |
| StyD4I | CCNGG | 2 cut(s) | 22, 69 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaiI | ACGT | 2 cut(s) | 481, 594 |
| TaqI | TCGA | 3 cut(s) | 51, 85, 271 |
| TaqII | GACCGA | 1 cut(s) | 415 |
| TasI | AATT | 2 cut(s) | 373, 534 |
| TauI | GCSGC | 2 cut(s) | 36, 39 |
| Tru1I | TTAA | 1 cut(s) | 594 |
| Tru9I | TTAA | 1 cut(s) | 594 |
| TseFI | GTSAC | 2 cut(s) | 256, 348 |
| TseI | GCWGC | 3 cut(s) | 392, 560, 563 |
| Tsp45I | GTSAC | 2 cut(s) | 256, 348 |
| Tth111I | GACNNNGTC | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 3 cut(s) | 98, 169, 190 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 307, 340 |
| XspI | CTAG | 3 cut(s) | 128, 141, 327 |