Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 545 |
| AciI | CCGC | 3 cut(s) | 196, 441, 471 |
| AfaI | GTAC | 1 cut(s) | 340 |
| AgsI | TTSAA | 3 cut(s) | 44, 478, 487 |
| AhlI | ACTAGT | 1 cut(s) | 502 |
| AjnI | CCWGG | 1 cut(s) | 405 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 524, 556 |
| AluBI | AGCT | 5 cut(s) | 40, 172, 264, 451, 511 |
| AluI | AGCT | 5 cut(s) | 40, 172, 264, 451, 511 |
| Alw26I | GTCTC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 1 cut(s) | 520 |
| BanII | GRGCYC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 223 |
| BciT130I | CCWGG | 1 cut(s) | 407 |
| BcoDI | GTCTC | 1 cut(s) | 14 |
| BcuI | ACTAGT | 1 cut(s) | 502 |
| BfaI | CTAG | 4 cut(s) | 152, 294, 503, 556 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BisI | GCNGC | 1 cut(s) | 212 |
| BlpI | GCTNAGC | 1 cut(s) | 326 |
| BlsI | GCNGC | 1 cut(s) | 213 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| BmiI | GGNNCC | 2 cut(s) | 116, 192 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 2 cut(s) | 280, 280 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 326 |
| BpuEI | CTTGAG | 1 cut(s) | 497 |
| BsaJI | CCNNGG | 1 cut(s) | 495 |
| BseBI | CCWGG | 1 cut(s) | 407 |
| BseDI | CCNNGG | 1 cut(s) | 495 |
| BseGI | GGATG | 2 cut(s) | 295, 415 |
| BseMII | CTCAG | 3 cut(s) | 243, 292, 528 |
| BseRI | GAGGAG | 1 cut(s) | 266 |
| BseXI | GCAGC | 1 cut(s) | 223 |
| Bsh1236I | CGCG | 1 cut(s) | 545 |
| BslFI | GGGAC | 1 cut(s) | 58 |
| BsmAI | GTCTC | 1 cut(s) | 14 |
| BsmFI | GGGAC | 1 cut(s) | 58 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 326 |
| Bsp68I | TCGCGA | 1 cut(s) | 545 |
| BspACI | CCGC | 3 cut(s) | 196, 441, 471 |
| BspCNI | CTCAG | 3 cut(s) | 244, 291, 529 |
| BspFNI | CGCG | 1 cut(s) | 545 |
| BspLI | GGNNCC | 2 cut(s) | 116, 192 |
| BssECI | CCNNGG | 1 cut(s) | 495 |
| BssT1I | CCWWGG | 1 cut(s) | 495 |
| Bst2UI | CCWGG | 1 cut(s) | 407 |
| Bst4CI | ACNGT | 4 cut(s) | 231, 338, 343, 483 |
| Bst6I | CTCTTC | 2 cut(s) | 390, 417 |
| BstC8I | GCNNGC | 2 cut(s) | 174, 200 |
| BstDEI | CTNAG | 4 cut(s) | 252, 278, 326, 537 |
| BstF5I | GGATG | 2 cut(s) | 295, 415 |
| BstFNI | CGCG | 1 cut(s) | 545 |
| BstMAI | GTCTC | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 199, 208 |
| BstNI | CCWGG | 1 cut(s) | 407 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstUI | CGCG | 1 cut(s) | 545 |
| BstV1I | GCAGC | 1 cut(s) | 223 |
| BtsCI | GGATG | 2 cut(s) | 295, 415 |
| BtuMI | TCGCGA | 1 cut(s) | 545 |
| Cac8I | GCNNGC | 2 cut(s) | 174, 200 |
| CseI | GACGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 1 cut(s) | 339 |
| CviAII | CATG | 3 cut(s) | 142, 215, 223 |
| CviQI | GTAC | 1 cut(s) | 339 |
| DdeI | CTNAG | 4 cut(s) | 252, 278, 326, 537 |
| Eam1104I | CTCTTC | 2 cut(s) | 390, 417 |
| EarI | CTCTTC | 2 cut(s) | 390, 417 |
| Eco130I | CCWWGG | 1 cut(s) | 495 |
| Eco24I | GRGCYC | 1 cut(s) | 195 |
| EcoRII | CCWGG | 1 cut(s) | 405 |
| EcoT14I | CCWWGG | 1 cut(s) | 495 |
| EcoT38I | GRGCYC | 1 cut(s) | 195 |
| ErhI | CCWWGG | 1 cut(s) | 495 |
| FaeI | CATG | 3 cut(s) | 145, 218, 226 |
| FaiI | YATR | 8 cut(s) | 35, 143, 216, 224, 321, 375, 550, 552 |
| FaqI | GGGAC | 1 cut(s) | 58 |
| FatI | CATG | 3 cut(s) | 141, 214, 222 |
| FauI | CCCGC | 2 cut(s) | 203, 478 |
| Fnu4HI | GCNGC | 1 cut(s) | 212 |
| FokI | GGATG | 2 cut(s) | 302, 422 |
| FriOI | GRGCYC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 1 cut(s) | 212 |
| FspBI | CTAG | 4 cut(s) | 152, 294, 503, 556 |
| GluI | GCNGC | 1 cut(s) | 212 |
| HgaI | GACGC | 1 cut(s) | 294 |
| Hin1II | CATG | 3 cut(s) | 145, 218, 226 |
| HinfI | GANTC | 3 cut(s) | 9, 89, 121 |
| HphI | GGTGA | 1 cut(s) | 520 |
| Hpy188I | TCNGA | 2 cut(s) | 126, 281 |
| Hpy188III | TCNNGA | 2 cut(s) | 118, 544 |
| HpyAV | CCTTC | 2 cut(s) | 121, 535 |
| HpyCH4III | ACNGT | 4 cut(s) | 231, 338, 343, 483 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 199, 208 |
| HpyF3I | CTNAG | 4 cut(s) | 252, 278, 326, 537 |
| Hsp92II | CATG | 3 cut(s) | 145, 218, 226 |
| LmnI | GCTCC | 1 cut(s) | 190 |
| Lsp1109I | GCAGC | 1 cut(s) | 223 |
| LweI | GCATC | 2 cut(s) | 280, 280 |
| MaeI | CTAG | 4 cut(s) | 152, 294, 503, 556 |
| MboII | GAAGA | 4 cut(s) | 310, 407, 434, 471 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MluCI | AATT | 1 cut(s) | 161 |
| MlyI | GAGTC | 1 cut(s) | 3 |
| MnlI | CCTC | 5 cut(s) | 247, 287, 391, 412, 418 |
| MseI | TTAA | 1 cut(s) | 168 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 407 |
| MvnI | CGCG | 1 cut(s) | 545 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 199, 208 |
| NlaIII | CATG | 3 cut(s) | 145, 218, 226 |
| NlaIV | GGNNCC | 2 cut(s) | 116, 192 |
| NruI | TCGCGA | 1 cut(s) | 545 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PfeI | GAWTC | 2 cut(s) | 89, 121 |
| PfoI | TCCNGGA | 1 cut(s) | 405 |
| PkrI | GCNGC | 1 cut(s) | 213 |
| PleI | GAGTC | 1 cut(s) | 3 |
| PpsI | GAGTC | 1 cut(s) | 3 |
| Psp6I | CCWGG | 1 cut(s) | 405 |
| PspGI | CCWGG | 1 cut(s) | 405 |
| PspN4I | GGNNCC | 2 cut(s) | 116, 192 |
| RruI | TCGCGA | 1 cut(s) | 545 |
| RsaI | GTAC | 1 cut(s) | 340 |
| RsaNI | GTAC | 1 cut(s) | 339 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 1 cut(s) | 212 |
| SchI | GAGTC | 1 cut(s) | 3 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SfaNI | GCATC | 2 cut(s) | 280, 280 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| SpeI | ACTAGT | 1 cut(s) | 502 |
| Sse9I | AATT | 1 cut(s) | 161 |
| SsiI | CCGC | 3 cut(s) | 196, 441, 471 |
| SspMI | CTAG | 4 cut(s) | 152, 294, 503, 556 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| StyI | CCWWGG | 1 cut(s) | 495 |
| TaaI | ACNGT | 4 cut(s) | 231, 338, 343, 483 |
| TaqI | TCGA | 2 cut(s) | 240, 267 |
| TasI | AATT | 1 cut(s) | 161 |
| TfiI | GAWTC | 2 cut(s) | 89, 121 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TseI | GCWGC | 1 cut(s) | 211 |
| TspDTI | ATGAA | 1 cut(s) | 390 |
| TspGWI | ACGGA | 1 cut(s) | 508 |
| XspI | CTAG | 4 cut(s) | 152, 294, 503, 556 |