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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 586 |
| AccI | GTMKAC | 2 cut(s) | 393, 522 |
| AccII | CGCG | 1 cut(s) | 516 |
| AciI | CCGC | 7 cut(s) | 207, 261, 291, 514, 707, 788, 822 |
| AclWI | GGATC | 2 cut(s) | 98, 111 |
| AcoI | YGGCCR | 4 cut(s) | 45, 130, 801, 823 |
| AcuI | CTGAAG | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 155, 368 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 586, 608, 810 |
| AflIII | ACRYGT | 1 cut(s) | 156 |
| AgsI | TTSAA | 2 cut(s) | 88, 232 |
| AjiI | CACGTC | 1 cut(s) | 629 |
| AjnI | CCWGG | 2 cut(s) | 69, 406 |
| AluBI | AGCT | 3 cut(s) | 186, 506, 853 |
| AluI | AGCT | 3 cut(s) | 186, 506, 853 |
| Alw26I | GTCTC | 1 cut(s) | 768 |
| AlwI | GGATC | 2 cut(s) | 98, 111 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 886 |
| AoxI | GGCC | 8 cut(s) | 45, 130, 276, 318, 536, 669, 801, 823 |
| ApaI | GGGCCC | 1 cut(s) | 673 |
| ApeKI | GCWGC | 2 cut(s) | 186, 209 |
| AspA2I | CCTAGG | 1 cut(s) | 665 |
| AspS9I | GGNCC | 5 cut(s) | 536, 611, 669, 670, 695 |
| AvaII | GGWCC | 2 cut(s) | 611, 695 |
| AvrII | CCTAGG | 1 cut(s) | 665 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BalI | TGGCCA | 3 cut(s) | 47, 132, 803 |
| BamHI | GGATCC | 1 cut(s) | 103 |
| BanII | GRGCYC | 1 cut(s) | 673 |
| BbvI | GCAGC | 2 cut(s) | 173, 221 |
| BccI | CCATC | 3 cut(s) | 14, 371, 674 |
| BceAI | ACGGC | 2 cut(s) | 121, 197 |
| BciT130I | CCWGG | 2 cut(s) | 71, 408 |
| BclI | TGATCA | 1 cut(s) | 648 |
| BcoDI | GTCTC | 1 cut(s) | 768 |
| BfaI | CTAG | 3 cut(s) | 75, 576, 666 |
| BisI | GCNGC | 5 cut(s) | 187, 210, 262, 789, 823 |
| BlnI | CCTAGG | 1 cut(s) | 665 |
| BlsI | GCNGC | 5 cut(s) | 188, 211, 263, 790, 824 |
| Bme1390I | CCNGG | 2 cut(s) | 71, 408 |
| Bme18I | GGWCC | 2 cut(s) | 611, 695 |
| BmgBI | CACGTC | 1 cut(s) | 629 |
| BmgT120I | GGNCC | 5 cut(s) | 536, 611, 669, 670, 695 |
| BmiI | GGNNCC | 6 cut(s) | 105, 124, 537, 612, 671, 696 |
| BmrFI | CCNGG | 2 cut(s) | 71, 408 |
| BmsI | GCATC | 3 cut(s) | 322, 462, 775 |
| BpuEI | CTTGAG | 2 cut(s) | 833, 853 |
| BsaAI | YACGTR | 2 cut(s) | 157, 526 |
| BsaJI | CCNNGG | 7 cut(s) | 39, 118, 127, 459, 665, 732, 780 |
| BsaWI | WCCGGW | 1 cut(s) | 676 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 583, 613 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 586, 608, 810 |
| Bse118I | RCCGGY | 2 cut(s) | 434, 538 |
| BseBI | CCWGG | 2 cut(s) | 71, 408 |
| BseDI | CCNNGG | 7 cut(s) | 39, 118, 127, 459, 665, 732, 780 |
| BseGI | GGATG | 5 cut(s) | 25, 341, 685, 790, 856 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 586, 608, 810 |
| BseRI | GAGGAG | 3 cut(s) | 591, 594, 656 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BseXI | GCAGC | 2 cut(s) | 173, 221 |
| Bsh1236I | CGCG | 1 cut(s) | 516 |
| BshFI | GGCC | 8 cut(s) | 47, 132, 278, 320, 538, 671, 803, 825 |
| BsiSI | CCGG | 3 cut(s) | 435, 539, 677 |
| BslFI | GGGAC | 1 cut(s) | 708 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 586, 608, 810 |
| BsmAI | GTCTC | 1 cut(s) | 768 |
| BsmFI | GGGAC | 1 cut(s) | 708 |
| BsmI | GAATGC | 1 cut(s) | 824 |
| BsnI | GGCC | 8 cut(s) | 47, 132, 278, 320, 538, 671, 803, 825 |
| Bsp120I | GGGCCC | 1 cut(s) | 669 |
| Bsp1286I | GDGCHC | 1 cut(s) | 673 |
| Bsp143I | GATC | 2 cut(s) | 103, 648 |
| BspACI | CCGC | 7 cut(s) | 207, 261, 291, 514, 707, 788, 822 |
| BspANI | GGCC | 8 cut(s) | 47, 132, 278, 320, 538, 671, 803, 825 |
| BspFNI | CGCG | 1 cut(s) | 516 |
| BspLI | GGNNCC | 6 cut(s) | 105, 124, 537, 612, 671, 696 |
| BspPI | GGATC | 2 cut(s) | 98, 111 |
| BsrFI | RCCGGY | 2 cut(s) | 434, 538 |
| BssAI | RCCGGY | 2 cut(s) | 434, 538 |
| BssECI | CCNNGG | 7 cut(s) | 39, 118, 127, 459, 665, 732, 780 |
| BssMI | GATC | 2 cut(s) | 103, 648 |
| BssNAI | GTATAC | 2 cut(s) | 394, 523 |
| BssT1I | CCWWGG | 4 cut(s) | 127, 459, 665, 732 |
| Bst1107I | GTATAC | 2 cut(s) | 394, 523 |
| Bst2UI | CCWGG | 2 cut(s) | 71, 408 |
| Bst4CI | ACNGT | 3 cut(s) | 547, 586, 888 |
| Bst6I | CTCTTC | 2 cut(s) | 498, 627 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 715 |
| BstBAI | YACGTR | 2 cut(s) | 157, 526 |
| BstC8I | GCNNGC | 5 cut(s) | 134, 540, 570, 657, 720 |
| BstDEI | CTNAG | 1 cut(s) | 97 |
| BstF5I | GGATG | 5 cut(s) | 25, 341, 685, 790, 856 |
| BstFNI | CGCG | 1 cut(s) | 516 |
| BstKTI | GATC | 2 cut(s) | 106, 651 |
| BstMAI | GTCTC | 1 cut(s) | 768 |
| BstMBI | GATC | 2 cut(s) | 103, 648 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 169, 218, 715 |
| BstNI | CCWGG | 2 cut(s) | 71, 408 |
| BstSCI | CCNGG | 2 cut(s) | 69, 406 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstSNI | TACGTA | 1 cut(s) | 526 |
| BstUI | CGCG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 2 cut(s) | 173, 221 |
| BstX2I | RGATCY | 1 cut(s) | 103 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 140, 680 |
| BstYI | RGATCY | 1 cut(s) | 103 |
| BstZ17I | GTATAC | 2 cut(s) | 394, 523 |
| BsuRI | GGCC | 8 cut(s) | 47, 132, 278, 320, 538, 671, 803, 825 |
| BtgZI | GCGATG | 1 cut(s) | 390 |
| BtrI | CACGTC | 1 cut(s) | 629 |
| BtsCI | GGATG | 5 cut(s) | 25, 341, 685, 790, 856 |
| BtsI | GCAGTG | 1 cut(s) | 492 |
| BtsIMutI | CAGTG | 1 cut(s) | 492 |
| Cac8I | GCNNGC | 5 cut(s) | 134, 540, 570, 657, 720 |
| CaiI | CAGNNNCTG | 1 cut(s) | 886 |
| Cfr10I | RCCGGY | 2 cut(s) | 434, 538 |
| Cfr13I | GGNCC | 5 cut(s) | 536, 611, 669, 670, 695 |
| Csp6I | GTAC | 2 cut(s) | 154, 367 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 24, 59 |
| CviAII | CATG | 3 cut(s) | 49, 288, 715 |
| CviQI | GTAC | 2 cut(s) | 154, 367 |
| DdeI | CTNAG | 1 cut(s) | 97 |
| DpnI | GATC | 2 cut(s) | 105, 650 |
| DpnII | GATC | 2 cut(s) | 103, 648 |
| EaeI | YGGCCR | 4 cut(s) | 45, 130, 801, 823 |
| Eam1104I | CTCTTC | 2 cut(s) | 498, 627 |
| EarI | CTCTTC | 2 cut(s) | 498, 627 |
| Eco105I | TACGTA | 1 cut(s) | 526 |
| Eco130I | CCWWGG | 4 cut(s) | 127, 459, 665, 732 |
| Eco147I | AGGCCT | 1 cut(s) | 320 |
| Eco24I | GRGCYC | 1 cut(s) | 673 |
| Eco32I | GATATC | 1 cut(s) | 844 |
| Eco47I | GGWCC | 2 cut(s) | 611, 695 |
| Eco57I | CTGAAG | 1 cut(s) | 479 |
| EcoO109I | RGGNCCY | 2 cut(s) | 669, 695 |
| EcoRII | CCWGG | 2 cut(s) | 69, 406 |
| EcoRV | GATATC | 1 cut(s) | 844 |
| EcoT14I | CCWWGG | 4 cut(s) | 127, 459, 665, 732 |
| EcoT38I | GRGCYC | 1 cut(s) | 673 |
| ErhI | CCWWGG | 4 cut(s) | 127, 459, 665, 732 |
| FaeI | CATG | 3 cut(s) | 52, 291, 718 |
| FaqI | GGGAC | 1 cut(s) | 708 |
| FatI | CATG | 3 cut(s) | 48, 287, 714 |
| FauI | CCCGC | 1 cut(s) | 521 |
| FbaI | TGATCA | 1 cut(s) | 648 |
| FblI | GTMKAC | 2 cut(s) | 393, 522 |
| Fnu4HI | GCNGC | 5 cut(s) | 187, 210, 262, 789, 823 |
| FokI | GGATG | 5 cut(s) | 32, 328, 692, 797, 843 |
| FriOI | GRGCYC | 1 cut(s) | 673 |
| Fsp4HI | GCNGC | 5 cut(s) | 187, 210, 262, 789, 823 |
| FspBI | CTAG | 3 cut(s) | 75, 576, 666 |
| GluI | GCNGC | 5 cut(s) | 187, 210, 262, 789, 823 |
| HaeIII | GGCC | 8 cut(s) | 47, 132, 278, 320, 538, 671, 803, 825 |
| HapII | CCGG | 3 cut(s) | 435, 539, 677 |
| Hin1II | CATG | 3 cut(s) | 52, 291, 718 |
| HinfI | GANTC | 2 cut(s) | 166, 490 |
| HpaII | CCGG | 3 cut(s) | 435, 539, 677 |
| Hpy166II | GTNNAC | 3 cut(s) | 394, 523, 550 |
| Hpy188III | TCNNGA | 2 cut(s) | 614, 870 |
| Hpy8I | GTNNAC | 3 cut(s) | 394, 523, 550 |
| HpyAV | CCTTC | 2 cut(s) | 172, 213 |
| HpyCH4III | ACNGT | 3 cut(s) | 547, 586, 888 |
| HpyCH4IV | ACGT | 4 cut(s) | 156, 390, 525, 628 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 189, 568 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 169, 218, 715 |
| HpyF3I | CTNAG | 1 cut(s) | 97 |
| HpySE526I | ACGT | 4 cut(s) | 156, 390, 525, 628 |
| Hsp92II | CATG | 3 cut(s) | 52, 291, 718 |
| KroI | GCCGGC | 1 cut(s) | 538 |
| KroNI | GCCGGC | 1 cut(s) | 540 |
| Ksp22I | TGATCA | 1 cut(s) | 648 |
| Kzo9I | GATC | 2 cut(s) | 103, 648 |
| Lsp1109I | GCAGC | 2 cut(s) | 173, 221 |
| LweI | GCATC | 3 cut(s) | 322, 462, 775 |
| MaeI | CTAG | 3 cut(s) | 75, 576, 666 |
| MaeII | ACGT | 4 cut(s) | 156, 390, 525, 628 |
| MaeIII | GTNAC | 1 cut(s) | 487 |
| MalI | GATC | 2 cut(s) | 105, 650 |
| MboI | GATC | 2 cut(s) | 103, 648 |
| MboII | GAAGA | 2 cut(s) | 485, 644 |
| MflI | RGATCY | 1 cut(s) | 103 |
| MhlI | GDGCHC | 1 cut(s) | 673 |
| MlsI | TGGCCA | 3 cut(s) | 47, 132, 803 |
| MluNI | TGGCCA | 3 cut(s) | 47, 132, 803 |
| MlyI | GAGTC | 1 cut(s) | 484 |
| MmeI | TCCRAC | 2 cut(s) | 313, 369 |
| Mox20I | TGGCCA | 3 cut(s) | 47, 132, 803 |
| MroNI | GCCGGC | 1 cut(s) | 538 |
| MscI | TGGCCA | 3 cut(s) | 47, 132, 803 |
| MseI | TTAA | 1 cut(s) | 447 |
| Msp20I | TGGCCA | 3 cut(s) | 47, 132, 803 |
| MspI | CCGG | 3 cut(s) | 435, 539, 677 |
| MspR9I | CCNGG | 2 cut(s) | 71, 408 |
| Mva1269I | GAATGC | 1 cut(s) | 824 |
| MvaI | CCWGG | 2 cut(s) | 71, 408 |
| MvnI | CGCG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 169, 218, 715 |
| NaeI | GCCGGC | 1 cut(s) | 540 |
| NdeII | GATC | 2 cut(s) | 103, 648 |
| NgoMIV | GCCGGC | 1 cut(s) | 538 |
| NlaIII | CATG | 3 cut(s) | 52, 291, 718 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 124, 537, 612, 671, 696 |
| NmuCI | GTSAC | 1 cut(s) | 487 |
| PceI | AGGCCT | 1 cut(s) | 320 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 824 |
| PdiI | GCCGGC | 1 cut(s) | 540 |
| PfeI | GAWTC | 1 cut(s) | 166 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 586 |
| PkrI | GCNGC | 5 cut(s) | 188, 211, 263, 790, 824 |
| PleI | GAGTC | 1 cut(s) | 484 |
| PpsI | GAGTC | 1 cut(s) | 484 |
| Ppu21I | YACGTR | 2 cut(s) | 157, 526 |
| PpuMI | RGGWCCY | 1 cut(s) | 695 |
| Psp5II | RGGWCCY | 1 cut(s) | 695 |
| Psp6I | CCWGG | 2 cut(s) | 69, 406 |
| PspGI | CCWGG | 2 cut(s) | 69, 406 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 124, 537, 612, 671, 696 |
| PspOMI | GGGCCC | 1 cut(s) | 669 |
| PspPI | GGNCC | 5 cut(s) | 536, 611, 669, 670, 695 |
| PspPPI | RGGWCCY | 1 cut(s) | 695 |
| PstNI | CAGNNNCTG | 1 cut(s) | 886 |
| PsuI | RGATCY | 1 cut(s) | 103 |
| RsaI | GTAC | 2 cut(s) | 155, 368 |
| RsaNI | GTAC | 2 cut(s) | 154, 367 |
| SaqAI | TTAA | 1 cut(s) | 447 |
| SatI | GCNGC | 5 cut(s) | 187, 210, 262, 789, 823 |
| Sau3AI | GATC | 2 cut(s) | 103, 648 |
| Sau96I | GGNCC | 5 cut(s) | 536, 611, 669, 670, 695 |
| SchI | GAGTC | 1 cut(s) | 484 |
| ScrFI | CCNGG | 2 cut(s) | 71, 408 |
| SduI | GDGCHC | 1 cut(s) | 673 |
| SfaNI | GCATC | 3 cut(s) | 322, 462, 775 |
| SinI | GGWCC | 2 cut(s) | 611, 695 |
| SmlI | CTYRAG | 2 cut(s) | 848, 868 |
| SmoI | CTYRAG | 2 cut(s) | 848, 868 |
| SnaBI | TACGTA | 1 cut(s) | 526 |
| SseBI | AGGCCT | 1 cut(s) | 320 |
| SsiI | CCGC | 7 cut(s) | 207, 261, 291, 514, 707, 788, 822 |
| SspMI | CTAG | 3 cut(s) | 75, 576, 666 |
| StuI | AGGCCT | 1 cut(s) | 320 |
| StyD4I | CCNGG | 2 cut(s) | 69, 406 |
| StyI | CCWWGG | 4 cut(s) | 127, 459, 665, 732 |
| TaaI | ACNGT | 3 cut(s) | 547, 586, 888 |
| TaiI | ACGT | 4 cut(s) | 159, 393, 528, 631 |
| TaqI | TCGA | 1 cut(s) | 323 |
| TauI | GCSGC | 3 cut(s) | 264, 791, 825 |
| TfiI | GAWTC | 1 cut(s) | 166 |
| Tru1I | TTAA | 1 cut(s) | 447 |
| Tru9I | TTAA | 1 cut(s) | 447 |
| TscAI | CASTG | 1 cut(s) | 492 |
| TseFI | GTSAC | 1 cut(s) | 487 |
| TseI | GCWGC | 2 cut(s) | 186, 209 |
| Tsp45I | GTSAC | 1 cut(s) | 487 |
| TspRI | CASTG | 1 cut(s) | 492 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 586 |
| VpaK11BI | GGWCC | 2 cut(s) | 611, 695 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 811 |
| XmaJI | CCTAGG | 1 cut(s) | 665 |
| XmiI | GTMKAC | 2 cut(s) | 393, 522 |
| XspI | CTAG | 3 cut(s) | 75, 576, 666 |