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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 238, 322 |
| AccII | CGCG | 2 cut(s) | 515, 517 |
| AciI | CCGC | 7 cut(s) | 31, 99, 200, 238, 322, 412, 455 |
| AclWI | GGATC | 1 cut(s) | 88 |
| AcoI | YGGCCR | 1 cut(s) | 406 |
| AfaI | GTAC | 1 cut(s) | 435 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 445, 480 |
| AgsI | TTSAA | 1 cut(s) | 309 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 1 cut(s) | 113 |
| AluI | AGCT | 1 cut(s) | 113 |
| Alw21I | GWGCWC | 1 cut(s) | 59 |
| AlwI | GGATC | 1 cut(s) | 88 |
| AoxI | GGCC | 4 cut(s) | 240, 263, 323, 406 |
| ApeKI | GCWGC | 1 cut(s) | 490 |
| AspLEI | GCGC | 3 cut(s) | 515, 517, 519 |
| AspS9I | GGNCC | 1 cut(s) | 240 |
| AsuC2I | CCSGG | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 1 cut(s) | 469 |
| BauI | CACGAG | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 1 cut(s) | 59 |
| BbvI | GCAGC | 1 cut(s) | 502 |
| BccI | CCATC | 1 cut(s) | 423 |
| BcnI | CCSGG | 1 cut(s) | 17 |
| BfaI | CTAG | 2 cut(s) | 270, 520 |
| BfmI | CTRYAG | 1 cut(s) | 488 |
| BisI | GCNGC | 2 cut(s) | 323, 491 |
| BlpI | GCTNAGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 2 cut(s) | 324, 492 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 1 cut(s) | 240 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 1 cut(s) | 183 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 227, 259 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 21 |
| BpuMI | CCSGG | 1 cut(s) | 17 |
| BsaBI | GATNNNNATC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 326 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 237, 404, 445, 480 |
| Bse3DI | GCAATG | 1 cut(s) | 161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 299 |
| BseDI | CCNNGG | 2 cut(s) | 45, 326 |
| BseGI | GGATG | 1 cut(s) | 174 |
| BseJI | GATNNNNATC | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 445, 480 |
| BseMI | GCAATG | 1 cut(s) | 161 |
| BsePI | GCGCGC | 2 cut(s) | 513, 515 |
| BseRI | GAGGAG | 1 cut(s) | 360 |
| BseXI | GCAGC | 1 cut(s) | 502 |
| Bsh1236I | CGCG | 2 cut(s) | 515, 517 |
| BshFI | GGCC | 4 cut(s) | 242, 265, 325, 408 |
| BsiHKAI | GWGCWC | 1 cut(s) | 59 |
| BsiSI | CCGG | 2 cut(s) | 16, 405 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 445, 480 |
| BsnI | GGCC | 4 cut(s) | 242, 265, 325, 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 59 |
| Bsp143I | GATC | 1 cut(s) | 93 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 21 |
| BspACI | CCGC | 7 cut(s) | 31, 99, 200, 238, 322, 412, 455 |
| BspANI | GGCC | 4 cut(s) | 242, 265, 325, 408 |
| BspFNI | CGCG | 2 cut(s) | 515, 517 |
| BspMAI | CTGCAG | 1 cut(s) | 492 |
| BspPI | GGATC | 1 cut(s) | 88 |
| BsrBI | CCGCTC | 2 cut(s) | 238, 322 |
| BsrDI | GCAATG | 1 cut(s) | 161 |
| BssECI | CCNNGG | 2 cut(s) | 45, 326 |
| BssHII | GCGCGC | 2 cut(s) | 513, 515 |
| BssMI | GATC | 1 cut(s) | 93 |
| BssSI | CACGAG | 1 cut(s) | 137 |
| BssT1I | CCWWGG | 1 cut(s) | 45 |
| Bst2BI | CACGAG | 1 cut(s) | 137 |
| Bst6I | CTCTTC | 3 cut(s) | 159, 187, 473 |
| BstC8I | GCNNGC | 5 cut(s) | 152, 240, 511, 515, 517 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstF5I | GGATG | 1 cut(s) | 174 |
| BstFNI | CGCG | 2 cut(s) | 515, 517 |
| BstHHI | GCGC | 3 cut(s) | 515, 517, 519 |
| BstKTI | GATC | 1 cut(s) | 96 |
| BstMBI | GATC | 1 cut(s) | 93 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 156, 331 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BstSFI | CTRYAG | 1 cut(s) | 488 |
| BstUI | CGCG | 2 cut(s) | 515, 517 |
| BstV1I | GCAGC | 1 cut(s) | 502 |
| BstX2I | RGATCY | 1 cut(s) | 93 |
| BstYI | RGATCY | 1 cut(s) | 93 |
| BsuRI | GGCC | 4 cut(s) | 242, 265, 325, 408 |
| BtsCI | GGATG | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 5 cut(s) | 152, 240, 511, 515, 517 |
| CfoI | GCGC | 3 cut(s) | 515, 517, 519 |
| Cfr13I | GGNCC | 1 cut(s) | 240 |
| Csp6I | GTAC | 1 cut(s) | 434 |
| CviQI | GTAC | 1 cut(s) | 434 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| DpnI | GATC | 1 cut(s) | 95 |
| DpnII | GATC | 1 cut(s) | 93 |
| EaeI | YGGCCR | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 3 cut(s) | 159, 187, 473 |
| EarI | CTCTTC | 3 cut(s) | 159, 187, 473 |
| Eco130I | CCWWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 45 |
| FaiI | YATR | 3 cut(s) | 81, 148, 390 |
| FauI | CCCGC | 2 cut(s) | 106, 231 |
| Fnu4HI | GCNGC | 2 cut(s) | 323, 491 |
| FokI | GGATG | 1 cut(s) | 161 |
| Fsp4HI | GCNGC | 2 cut(s) | 323, 491 |
| FspBI | CTAG | 2 cut(s) | 270, 520 |
| GlaI | GCGC | 3 cut(s) | 514, 516, 518 |
| GluI | GCNGC | 2 cut(s) | 323, 491 |
| HaeIII | GGCC | 4 cut(s) | 242, 265, 325, 408 |
| HapII | CCGG | 2 cut(s) | 16, 405 |
| HhaI | GCGC | 3 cut(s) | 515, 517, 519 |
| Hin6I | GCGC | 3 cut(s) | 513, 515, 517 |
| HinP1I | GCGC | 3 cut(s) | 513, 515, 517 |
| HinfI | GANTC | 1 cut(s) | 295 |
| HpaII | CCGG | 2 cut(s) | 16, 405 |
| HphI | GGTGA | 1 cut(s) | 469 |
| Hpy166II | GTNNAC | 2 cut(s) | 13, 436 |
| Hpy188III | TCNNGA | 2 cut(s) | 189, 309 |
| Hpy8I | GTNNAC | 2 cut(s) | 13, 436 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 6 cut(s) | 65, 241, 276, 417, 445, 480 |
| HpyCH4IV | ACGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 3 cut(s) | 159, 357, 490 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 156, 331 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| HpySE526I | ACGT | 1 cut(s) | 206 |
| HspAI | GCGC | 3 cut(s) | 513, 515, 517 |
| Kzo9I | GATC | 1 cut(s) | 93 |
| LmnI | GCTCC | 1 cut(s) | 407 |
| LpnPI | CCDG | 3 cut(s) | 19, 29, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 502 |
| LweI | GCATC | 1 cut(s) | 183 |
| MaeI | CTAG | 2 cut(s) | 270, 520 |
| MaeII | ACGT | 1 cut(s) | 206 |
| MalI | GATC | 1 cut(s) | 95 |
| MbiI | CCGCTC | 2 cut(s) | 238, 322 |
| MboI | GATC | 1 cut(s) | 93 |
| MboII | GAAGA | 3 cut(s) | 176, 204, 490 |
| MflI | RGATCY | 1 cut(s) | 93 |
| MhlI | GDGCHC | 1 cut(s) | 59 |
| MnlI | CCTC | 6 cut(s) | 253, 336, 338, 343, 408, 474 |
| MslI | CAYNNNNRTG | 2 cut(s) | 179, 370 |
| MspI | CCGG | 2 cut(s) | 16, 405 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| MvnI | CGCG | 2 cut(s) | 515, 517 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 156, 331 |
| NciI | CCSGG | 1 cut(s) | 17 |
| NdeII | GATC | 1 cut(s) | 93 |
| NmeAIII | GCCGAG | 1 cut(s) | 341 |
| PauI | GCGCGC | 2 cut(s) | 513, 515 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PkrI | GCNGC | 2 cut(s) | 324, 492 |
| PspPI | GGNCC | 1 cut(s) | 240 |
| PstI | CTGCAG | 1 cut(s) | 492 |
| PsuI | RGATCY | 1 cut(s) | 93 |
| PteI | GCGCGC | 2 cut(s) | 513, 515 |
| RsaI | GTAC | 1 cut(s) | 435 |
| RsaNI | GTAC | 1 cut(s) | 434 |
| RseI | CAYNNNNRTG | 2 cut(s) | 179, 370 |
| SatI | GCNGC | 2 cut(s) | 323, 491 |
| Sau3AI | GATC | 1 cut(s) | 93 |
| Sau96I | GGNCC | 1 cut(s) | 240 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SduI | GDGCHC | 1 cut(s) | 59 |
| SetI | ASST | 5 cut(s) | 47, 115, 209, 400, 500 |
| SfaNI | GCATC | 1 cut(s) | 183 |
| SfcI | CTRYAG | 1 cut(s) | 488 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 179, 370 |
| SsiI | CCGC | 7 cut(s) | 31, 99, 200, 238, 322, 412, 455 |
| SspMI | CTAG | 2 cut(s) | 270, 520 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| StyI | CCWWGG | 1 cut(s) | 45 |
| TaiI | ACGT | 1 cut(s) | 209 |
| TaqI | TCGA | 5 cut(s) | 6, 190, 234, 336, 377 |
| TauI | GCSGC | 1 cut(s) | 325 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| TseI | GCWGC | 1 cut(s) | 490 |
| XspI | CTAG | 2 cut(s) | 270, 520 |