Rw1G001440

Sister chromatid cohesion protein PDS5 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
2444412 .. 2445491
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001440.1

Sequence Viewer

Length: 966 bp
ATGCTCGCACCTTTCCCCCGAGGTTATAAGAACTTTATTTTCTCTACTTTTTCAGGGGAGGACACTGAAGATGCGGCAACACATCTGGCCAGGTTTAGGGTACAATGTGGCCAATACCAGAATGATGATGTCCTCAAGTGCAGGATCTTTGGCACTTCTCTGTCGGGCGCTGCCTTCAGATGGTTTTCTAAACTCAGACCAGGGACAGTGGCGGATTGGCCGGCAATGGAACTACTTTTCCGTGAGACATTTGGAACTATTGAACCTGAAGAGTTAGTCAAGTTGGCGGTCAAAGGTTTGGAGCCCCGACAACGAAAGAAGCAACATGGCAGCATGATTCAGTCGATGGGAGAACTCATCACGGAGGTGGGCAGTTTCGAACATCTCCTCAGAGAAACAGATGCGAGGAAGAATGCTTCCAGAGGGACGTACATGCCAGGTAAACACCGTACTGTAGCGGCCCTGAGCTACCAGCCGGCCACTTACGACCCTTATTACCATCACAACACTGGAGAAGTGGTCCAGGACGACGAAGAGGACGAGGATAATGATATCGCATCCTACGACCTAACCGGGAAGAAGAACCCGTCCTTGAAGCAGTTGAAGATTTCCAAGGAGCCTGTTAAGCTCAAATCAATGGCCTTCACCAAACCGGAGTTCGCGACATATACTTATGATGCCAATAAAGCTCACGAGATGCTCGACGAGATGATCGCTGCAAAGATGGTGAAGACTGATTTTGGGCCTTTTCCGCGACCAGAGCAGTTGAAGGGAAAGAAGTACTGCAAGTTCCATAATCTGTGGAACCACAATACCGCGGACTGTGTAAAGCTCAAAGACCAGATTCAGGTATGGCTTAATAACGGTAGTTTGCAGGTAGAGGCTCCCGTCACTGCGGCAGCACTAGTTGACGTGGATCCCTTCCCTGACACCGGGATCAATATGGTCAATGTGGATTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

36.44

Weight (kDa)

6.33

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 865
AccII CGCG 3 cut(s) 662, 754, 818
AciI CCGC 8 cut(s) 74, 212, 287, 458, 752, 816, 818, 896
AclWI GGATC 4 cut(s) 152, 911, 924, 944
AcoI YGGCCR 4 cut(s) 87, 109, 218, 477
AcuI CTGAAG 3 cut(s) 87, 160, 288
AfaI GTAC 4 cut(s) 102, 431, 451, 782
AfiI CCNNNNNNNGG 4 cut(s) 96, 180, 847, 932
AgsI TTSAA 4 cut(s) 263, 595, 604, 769
AhlI ACTAGT 1 cut(s) 904
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 4 cut(s) 89, 199, 436, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 641, 673
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 4 cut(s) 468, 628, 689, 832
AluI AGCT 4 cut(s) 468, 628, 689, 832
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 4 cut(s) 152, 911, 924, 944
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 7 cut(s) 87, 109, 218, 459, 477, 639, 743
ApeKI GCWGC 4 cut(s) 170, 330, 716, 899
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 460, 520, 743
AsuC2I CCSGG 2 cut(s) 574, 934
AsuHPI GGTGA 2 cut(s) 637, 739
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 520
BalI TGGCCA 2 cut(s) 89, 111
BamHI GGATCC 1 cut(s) 916
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 737
BbvI GCAGC 4 cut(s) 157, 342, 703, 911
BccI CCATC 4 cut(s) 174, 340, 507, 718
BciT130I CCWGG 4 cut(s) 91, 201, 438, 524
BcnI CCSGG 2 cut(s) 574, 934
BcoDI GTCTC 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 904
BfaI CTAG 1 cut(s) 905
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 7 cut(s) 75, 171, 331, 459, 717, 897, 900
BlsI GCNGC 7 cut(s) 76, 172, 332, 460, 718, 898, 901
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 91, 201, 438, 524, 574, 934
Bme18I GGWCC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 18
BmgBI CACGTC 1 cut(s) 913
BmgT120I GGNCC 3 cut(s) 460, 520, 743
BmiI GGNNCC 5 cut(s) 303, 618, 806, 885, 918
BmrFI CCNGG 6 cut(s) 91, 201, 438, 524, 574, 934
BmsI GCATC 5 cut(s) 61, 391, 566, 667, 687
BpiI GAAGAC 1 cut(s) 737
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 464
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 574, 934
BsaJI CCNNGG 4 cut(s) 19, 200, 612, 816
BsaWI WCCGGW 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 180, 847, 932
Bse118I RCCGGY 2 cut(s) 220, 475
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 4 cut(s) 91, 201, 438, 524
BseDI CCNNGG 4 cut(s) 19, 200, 612, 816
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 4 cut(s) 96, 180, 847, 932
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 3 cut(s) 208, 403, 455
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 4 cut(s) 157, 342, 703, 911
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 662, 754, 818
BshFI GGCC 7 cut(s) 89, 111, 220, 461, 479, 641, 745
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 5 cut(s) 221, 476, 573, 653, 933
BslFI GGGAC 2 cut(s) 217, 439
BslI CCNNNNNNNGG 4 cut(s) 96, 180, 847, 932
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 217, 439
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 7 cut(s) 89, 111, 220, 461, 479, 641, 745
BsoBI CYCGRG 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 144, 711, 916, 936
Bsp68I TCGCGA 1 cut(s) 662
BspACI CCGC 8 cut(s) 74, 212, 287, 458, 752, 816, 818, 896
BspANI GGCC 7 cut(s) 89, 111, 220, 461, 479, 641, 745
BspCNI CTCAG 3 cut(s) 207, 402, 456
BspFNI CGCG 3 cut(s) 662, 754, 818
BspLI GGNNCC 5 cut(s) 303, 618, 806, 885, 918
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 4 cut(s) 152, 911, 924, 944
BspT104I TTCGAA 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 2 cut(s) 220, 475
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 2 cut(s) 220, 475
BssECI CCNNGG 4 cut(s) 19, 200, 612, 816
BssMI GATC 4 cut(s) 144, 711, 916, 936
BssSI CACGAG 1 cut(s) 692
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 692
Bst2UI CCWGG 4 cut(s) 91, 201, 438, 524
Bst4CI ACNGT 5 cut(s) 208, 449, 454, 824, 866
Bst6I CTCTTC 2 cut(s) 264, 528
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 6, 222, 477
BstDEI CTNAG 3 cut(s) 194, 389, 464
BstDSI CCRYGG 1 cut(s) 816
BstF5I GGATG 1 cut(s) 557
BstFNI CGCG 3 cut(s) 662, 754, 818
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 4 cut(s) 147, 714, 919, 939
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 144, 711, 916, 936
BstMWI GCNNNNNNNGC 4 cut(s) 625, 686, 751, 760
BstNI CCWGG 4 cut(s) 91, 201, 438, 524
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 6 cut(s) 89, 199, 436, 522, 572, 932
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 3 cut(s) 662, 754, 818
BstV1I GCAGC 4 cut(s) 157, 342, 703, 911
BstV2I GAAGAC 1 cut(s) 737
BstX2I RGATCY 2 cut(s) 144, 916
BstYI RGATCY 2 cut(s) 144, 916
BsuRI GGCC 7 cut(s) 89, 111, 220, 461, 479, 641, 745
BtgI CCRYGG 1 cut(s) 816
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 1 cut(s) 557
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 4 cut(s) 63, 213, 507, 891
BtuMI TCGCGA 1 cut(s) 662
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 6, 222, 477
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 2 cut(s) 220, 475
Cfr13I GGNCC 3 cut(s) 460, 520, 743
Cfr42I CCGCGG 1 cut(s) 819
Csp6I GTAC 4 cut(s) 101, 430, 450, 781
CviAII CATG 3 cut(s) 326, 334, 433
CviQI GTAC 4 cut(s) 101, 430, 450, 781
DdeI CTNAG 3 cut(s) 194, 389, 464
DpnI GATC 4 cut(s) 146, 713, 918, 938
DpnII GATC 4 cut(s) 144, 711, 916, 936
EaeI YGGCCR 4 cut(s) 87, 109, 218, 477
Eam1104I CTCTTC 2 cut(s) 264, 528
EarI CTCTTC 2 cut(s) 264, 528
EciI GGCGGA 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 3 cut(s) 87, 160, 288
Eco88I CYCGRG 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 89, 199, 436, 522
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 3 cut(s) 329, 337, 436
FaqI GGGAC 2 cut(s) 217, 439
FatI CATG 3 cut(s) 325, 333, 432
Fnu4HI GCNGC 7 cut(s) 75, 171, 331, 459, 717, 897, 900
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 7 cut(s) 75, 171, 331, 459, 717, 897, 900
FspBI CTAG 1 cut(s) 905
GlaI GCGC 1 cut(s) 169
GluI GCNGC 7 cut(s) 75, 171, 331, 459, 717, 897, 900
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 7 cut(s) 89, 111, 220, 461, 479, 641, 745
HapII CCGG 5 cut(s) 221, 476, 573, 653, 933
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 329, 337, 436
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 2 cut(s) 337, 844
HpaII CCGG 5 cut(s) 221, 476, 573, 653, 933
HphI GGTGA 2 cut(s) 637, 739
Hpy166II GTNNAC 2 cut(s) 443, 910
Hpy188I TCNGA 3 cut(s) 179, 197, 392
Hpy188III TCNNGA 3 cut(s) 420, 661, 692
Hpy8I GTNNAC 2 cut(s) 443, 910
Hpy99I CGWCG 2 cut(s) 533, 707
HpyAV CCTTC 4 cut(s) 184, 652, 763, 931
HpyCH4III ACNGT 5 cut(s) 208, 449, 454, 824, 866
HpyCH4IV ACGT 2 cut(s) 428, 912
HpyCH4V TGCA 4 cut(s) 141, 719, 786, 874
HpyF10VI GCNNNNNNNGC 4 cut(s) 625, 686, 751, 760
HpyF3I CTNAG 3 cut(s) 194, 389, 464
HpySE526I ACGT 2 cut(s) 428, 912
Hsp92II CATG 3 cut(s) 329, 337, 436
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 2 cut(s) 220, 475
KroNI GCCGGC 2 cut(s) 222, 477
KspI CCGCGG 1 cut(s) 819
Kzo9I GATC 4 cut(s) 144, 711, 916, 936
LmnI GCTCC 3 cut(s) 301, 616, 889
Lsp1109I GCAGC 4 cut(s) 157, 342, 703, 911
LweI GCATC 5 cut(s) 61, 391, 566, 667, 687
MaeI CTAG 1 cut(s) 905
MaeII ACGT 2 cut(s) 428, 912
MaeIII GTNAC 1 cut(s) 889
MalI GATC 4 cut(s) 146, 713, 918, 938
MboI GATC 4 cut(s) 144, 711, 916, 936
MboII GAAGA 8 cut(s) 80, 281, 421, 545, 589, 592, 616, 742
MflI RGATCY 2 cut(s) 144, 916
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 2 cut(s) 89, 111
MluNI TGGCCA 2 cut(s) 89, 111
Mox20I TGGCCA 2 cut(s) 89, 111
MroNI GCCGGC 2 cut(s) 220, 475
MscI TGGCCA 2 cut(s) 89, 111
MseI TTAA 2 cut(s) 624, 858
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 2 cut(s) 89, 111
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 5 cut(s) 221, 476, 573, 653, 933
MspR9I CCNGG 6 cut(s) 91, 201, 438, 524, 574, 934
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 4 cut(s) 91, 201, 438, 524
MvnI CGCG 3 cut(s) 662, 754, 818
MwoI GCNNNNNNNGC 4 cut(s) 625, 686, 751, 760
NaeI GCCGGC 2 cut(s) 222, 477
NciI CCSGG 2 cut(s) 574, 934
NdeII GATC 4 cut(s) 144, 711, 916, 936
NgoMIV GCCGGC 2 cut(s) 220, 475
NlaIII CATG 3 cut(s) 329, 337, 436
NlaIV GGNNCC 5 cut(s) 303, 618, 806, 885, 918
NmuCI GTSAC 1 cut(s) 889
NruI TCGCGA 1 cut(s) 662
NspI RCATGY 1 cut(s) 436
NspV TTCGAA 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 3 cut(s) 537, 561, 699
PctI GAATGC 1 cut(s) 418
PdiI GCCGGC 2 cut(s) 222, 477
PfeI GAWTC 2 cut(s) 337, 844
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 7 cut(s) 76, 172, 332, 460, 718, 898, 901
PsiI TTATAA 1 cut(s) 27
Psp6I CCWGG 4 cut(s) 89, 199, 436, 522
PspGI CCWGG 4 cut(s) 89, 199, 436, 522
PspN4I GGNNCC 5 cut(s) 303, 618, 806, 885, 918
PspPI GGNCC 3 cut(s) 460, 520, 743
PsrI GAACNNNNNNTAC 2 cut(s) 773, 805
PsuI RGATCY 2 cut(s) 144, 916
RruI TCGCGA 1 cut(s) 662
RsaI GTAC 4 cut(s) 102, 431, 451, 782
RsaNI GTAC 4 cut(s) 101, 430, 450, 781
RseI CAYNNNNRTG 1 cut(s) 365
SacII CCGCGG 1 cut(s) 819
SaqAI TTAA 2 cut(s) 624, 858
SatI GCNGC 7 cut(s) 75, 171, 331, 459, 717, 897, 900
Sau3AI GATC 4 cut(s) 144, 711, 916, 936
Sau96I GGNCC 3 cut(s) 460, 520, 743
ScaI AGTACT 1 cut(s) 782
ScrFI CCNGG 6 cut(s) 91, 201, 438, 524, 574, 934
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 5 cut(s) 61, 391, 566, 667, 687
SfcI CTRYAG 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 819
SfuI TTCGAA 1 cut(s) 378
SgrBI CCGCGG 1 cut(s) 819
SinI GGWCC 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 904
SsiI CCGC 8 cut(s) 74, 212, 287, 458, 752, 816, 818, 896
SspMI CTAG 1 cut(s) 905
StyD4I CCNGG 6 cut(s) 89, 199, 436, 522, 572, 932
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 5 cut(s) 208, 449, 454, 824, 866
TaiI ACGT 2 cut(s) 431, 915
TaqI TCGA 3 cut(s) 344, 378, 702
TatI WGTACW 1 cut(s) 780
TauI GCSGC 3 cut(s) 77, 461, 899
TfiI GAWTC 2 cut(s) 337, 844
Tru1I TTAA 2 cut(s) 624, 858
Tru9I TTAA 2 cut(s) 624, 858
TscAI CASTG 4 cut(s) 70, 213, 514, 898
TseFI GTSAC 1 cut(s) 889
TseI GCWGC 4 cut(s) 170, 330, 716, 899
Tsp45I GTSAC 1 cut(s) 889
TspGWI ACGGA 2 cut(s) 230, 377
TspRI CASTG 4 cut(s) 70, 213, 514, 898
VpaK11BI GGWCC 1 cut(s) 520
XceI RCATGY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XspI CTAG 1 cut(s) 905
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.