Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 413 |
| AciI | CCGC | 1 cut(s) | 212 |
| AclWI | GGATC | 2 cut(s) | 330, 343 |
| AcsI | RAATTY | 1 cut(s) | 407 |
| AcuI | CTGAAG | 3 cut(s) | 312, 365, 374 |
| AcyI | GRCGYC | 1 cut(s) | 156 |
| AfaI | GTAC | 2 cut(s) | 185, 425 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 177, 385 |
| AflII | CTTAAG | 1 cut(s) | 229 |
| AflIII | ACRYGT | 1 cut(s) | 420 |
| AgsI | TTSAA | 1 cut(s) | 133 |
| AjnI | CCWGG | 1 cut(s) | 189 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 392, 424 |
| AluBI | AGCT | 7 cut(s) | 28, 129, 281, 319, 343, 352, 358 |
| AluI | AGCT | 7 cut(s) | 28, 129, 281, 319, 343, 352, 358 |
| Alw21I | GWGCWC | 1 cut(s) | 321 |
| AlwI | GGATC | 2 cut(s) | 330, 343 |
| ApeKI | GCWGC | 3 cut(s) | 76, 308, 349 |
| ApoI | RAATTY | 1 cut(s) | 407 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 357, 389 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AsuC2I | CCSGG | 1 cut(s) | 325 |
| AsuHPI | GGTGA | 2 cut(s) | 313, 388 |
| BamHI | GGATCC | 1 cut(s) | 335 |
| BanII | GRGCYC | 1 cut(s) | 321 |
| BbsI | GAAGAC | 2 cut(s) | 303, 385 |
| Bbv12I | GWGCWC | 1 cut(s) | 321 |
| BbvCI | CCTCAGC | 1 cut(s) | 282 |
| BbvI | GCAGC | 3 cut(s) | 88, 320, 361 |
| BccI | CCATC | 1 cut(s) | 231 |
| BciT130I | CCWGG | 1 cut(s) | 191 |
| BclI | TGATCA | 1 cut(s) | 111 |
| BcnI | CCSGG | 1 cut(s) | 325 |
| BfaI | CTAG | 3 cut(s) | 29, 53, 267 |
| BfmI | CTRYAG | 1 cut(s) | 250 |
| BfoI | RGCGCY | 1 cut(s) | 218 |
| BfrI | CTTAAG | 1 cut(s) | 229 |
| BisI | GCNGC | 4 cut(s) | 77, 213, 309, 350 |
| BlpI | GCTNAGC | 1 cut(s) | 218 |
| BlsI | GCNGC | 4 cut(s) | 78, 214, 310, 351 |
| Bme1390I | CCNGG | 2 cut(s) | 191, 325 |
| BmiI | GGNNCC | 1 cut(s) | 337 |
| BmrFI | CCNGG | 2 cut(s) | 191, 325 |
| BpiI | GAAGAC | 2 cut(s) | 303, 385 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BpuMI | CCSGG | 1 cut(s) | 325 |
| BsaAI | YACGTR | 1 cut(s) | 423 |
| BsaHI | GRCGYC | 1 cut(s) | 156 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 190 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 177, 385 |
| Bse1I | ACTGG | 1 cut(s) | 371 |
| BseBI | CCWGG | 1 cut(s) | 191 |
| BseDI | CCNNGG | 2 cut(s) | 99, 190 |
| BseGI | GGATG | 1 cut(s) | 186 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 177, 385 |
| BseMII | CTCAG | 3 cut(s) | 157, 209, 273 |
| BseNI | ACTGG | 1 cut(s) | 371 |
| BseXI | GCAGC | 3 cut(s) | 88, 320, 361 |
| Bsh1236I | CGCG | 1 cut(s) | 413 |
| BsiHKAI | GWGCWC | 1 cut(s) | 321 |
| BsiSI | CCGG | 1 cut(s) | 324 |
| BsiWI | CGTACG | 1 cut(s) | 423 |
| BslFI | GGGAC | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 177, 385 |
| BsmFI | GGGAC | 1 cut(s) | 193 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 321 |
| Bsp143I | GATC | 3 cut(s) | 9, 111, 335 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 218 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| Bsp68I | TCGCGA | 1 cut(s) | 413 |
| BspACI | CCGC | 1 cut(s) | 212 |
| BspCNI | CTCAG | 3 cut(s) | 156, 210, 274 |
| BspFNI | CGCG | 1 cut(s) | 413 |
| BspLI | GGNNCC | 1 cut(s) | 337 |
| BspPI | GGATC | 2 cut(s) | 330, 343 |
| BspTI | CTTAAG | 1 cut(s) | 229 |
| BsrI | ACTGG | 1 cut(s) | 371 |
| BssECI | CCNNGG | 2 cut(s) | 99, 190 |
| BssMI | GATC | 3 cut(s) | 9, 111, 335 |
| BssNI | GRCGYC | 1 cut(s) | 156 |
| BssT1I | CCWWGG | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 274 |
| BstACI | GRCGYC | 1 cut(s) | 156 |
| BstAFI | CTTAAG | 1 cut(s) | 229 |
| BstBAI | YACGTR | 1 cut(s) | 423 |
| BstDEI | CTNAG | 3 cut(s) | 143, 218, 282 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 1 cut(s) | 186 |
| BstFNI | CGCG | 1 cut(s) | 413 |
| BstH2I | RGCGCY | 1 cut(s) | 218 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 3 cut(s) | 12, 114, 338 |
| BstMBI | GATC | 3 cut(s) | 9, 111, 335 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 349, 355 |
| BstNI | CCWGG | 1 cut(s) | 191 |
| BstNSI | RCATGY | 1 cut(s) | 91 |
| BstSCI | CCNGG | 2 cut(s) | 189, 323 |
| BstSFI | CTRYAG | 1 cut(s) | 250 |
| BstUI | CGCG | 1 cut(s) | 413 |
| BstV1I | GCAGC | 3 cut(s) | 88, 320, 361 |
| BstV2I | GAAGAC | 2 cut(s) | 303, 385 |
| BstX2I | RGATCY | 1 cut(s) | 335 |
| BstYI | RGATCY | 1 cut(s) | 335 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtsCI | GGATG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 213 |
| BtuMI | TCGCGA | 1 cut(s) | 413 |
| CfoI | GCGC | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 164 |
| Csp6I | GTAC | 2 cut(s) | 184, 424 |
| CviAII | CATG | 4 cut(s) | 80, 88, 100, 160 |
| CviJI | RGCY | 8 cut(s) | 28, 129, 222, 281, 319, 343, 352, 358 |
| CviKI_1 | RGCY | 8 cut(s) | 28, 129, 222, 281, 319, 343, 352, 358 |
| CviQI | GTAC | 2 cut(s) | 184, 424 |
| DdeI | CTNAG | 3 cut(s) | 143, 218, 282 |
| DpnI | GATC | 3 cut(s) | 11, 113, 337 |
| DpnII | GATC | 3 cut(s) | 9, 111, 335 |
| Ecl136II | GAGCTC | 1 cut(s) | 319 |
| Eco130I | CCWWGG | 1 cut(s) | 99 |
| Eco24I | GRGCYC | 1 cut(s) | 321 |
| Eco53kI | GAGCTC | 1 cut(s) | 319 |
| Eco57I | CTGAAG | 3 cut(s) | 312, 365, 374 |
| EcoICRI | GAGCTC | 1 cut(s) | 319 |
| EcoRI | GAATTC | 1 cut(s) | 407 |
| EcoRII | CCWGG | 1 cut(s) | 189 |
| EcoT14I | CCWWGG | 1 cut(s) | 99 |
| EcoT38I | GRGCYC | 1 cut(s) | 321 |
| ErhI | CCWWGG | 1 cut(s) | 99 |
| FaeI | CATG | 4 cut(s) | 83, 91, 103, 163 |
| FaiI | YATR | 5 cut(s) | 81, 89, 101, 161, 240 |
| FaqI | GGGAC | 1 cut(s) | 193 |
| FatI | CATG | 4 cut(s) | 79, 87, 99, 159 |
| FbaI | TGATCA | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 213, 309, 350 |
| FokI | GGATG | 1 cut(s) | 173 |
| FriOI | GRGCYC | 1 cut(s) | 321 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 213, 309, 350 |
| FspBI | CTAG | 3 cut(s) | 29, 53, 267 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 4 cut(s) | 77, 213, 309, 350 |
| HaeII | RGCGCY | 1 cut(s) | 218 |
| HapII | CCGG | 1 cut(s) | 324 |
| HgaI | GACGC | 1 cut(s) | 164 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1I | GRCGYC | 1 cut(s) | 156 |
| Hin1II | CATG | 4 cut(s) | 83, 91, 103, 163 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HincII | GTYRAC | 1 cut(s) | 376 |
| HindII | GTYRAC | 1 cut(s) | 376 |
| HindIII | AAGCTT | 2 cut(s) | 127, 356 |
| HinfI | GANTC | 2 cut(s) | 263, 287 |
| HpaII | CCGG | 1 cut(s) | 324 |
| HphI | GGTGA | 2 cut(s) | 313, 388 |
| Hpy166II | GTNNAC | 1 cut(s) | 376 |
| Hpy188I | TCNGA | 2 cut(s) | 146, 292 |
| Hpy188III | TCNNGA | 2 cut(s) | 53, 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 376 |
| HpyAV | CCTTC | 1 cut(s) | 325 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 274 |
| HpyCH4IV | ACGT | 2 cut(s) | 182, 422 |
| HpyCH4V | TGCA | 1 cut(s) | 363 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 349, 355 |
| HpyF3I | CTNAG | 3 cut(s) | 143, 218, 282 |
| HpySE526I | ACGT | 2 cut(s) | 182, 422 |
| Hsp92I | GRCGYC | 1 cut(s) | 156 |
| Hsp92II | CATG | 4 cut(s) | 83, 91, 103, 163 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Ksp22I | TGATCA | 1 cut(s) | 111 |
| Kzo9I | GATC | 3 cut(s) | 9, 111, 335 |
| LmnI | GCTCC | 3 cut(s) | 84, 255, 316 |
| LpnPI | CCDG | 8 cut(s) | 30, 176, 187, 203, 238, 337, 384, 417 |
| Lsp1109I | GCAGC | 3 cut(s) | 88, 320, 361 |
| MaeI | CTAG | 3 cut(s) | 29, 53, 267 |
| MaeII | ACGT | 2 cut(s) | 182, 422 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 3 cut(s) | 11, 113, 337 |
| MboI | GATC | 3 cut(s) | 9, 111, 335 |
| MboII | GAAGA | 5 cut(s) | 175, 305, 308, 340, 385 |
| MflI | RGATCY | 1 cut(s) | 335 |
| MhlI | GDGCHC | 1 cut(s) | 321 |
| MluCI | AATT | 1 cut(s) | 407 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 5 cut(s) | 69, 181, 253, 277, 389 |
| MseI | TTAA | 2 cut(s) | 93, 230 |
| MspA1I | CMGCKG | 1 cut(s) | 352 |
| MspCI | CTTAAG | 1 cut(s) | 229 |
| MspI | CCGG | 1 cut(s) | 324 |
| MspR9I | CCNGG | 2 cut(s) | 191, 325 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 1 cut(s) | 191 |
| MvnI | CGCG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 349, 355 |
| NciI | CCSGG | 1 cut(s) | 325 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeII | GATC | 3 cut(s) | 9, 111, 335 |
| NlaIII | CATG | 4 cut(s) | 83, 91, 103, 163 |
| NlaIV | GGNNCC | 1 cut(s) | 337 |
| NruI | TCGCGA | 1 cut(s) | 413 |
| NspI | RCATGY | 1 cut(s) | 91 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 179 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 2 cut(s) | 263, 287 |
| Pfl23II | CGTACG | 1 cut(s) | 423 |
| PkrI | GCNGC | 4 cut(s) | 78, 214, 310, 351 |
| Ppu21I | YACGTR | 1 cut(s) | 423 |
| Psp124BI | GAGCTC | 1 cut(s) | 321 |
| Psp6I | CCWGG | 1 cut(s) | 189 |
| PspGI | CCWGG | 1 cut(s) | 189 |
| PspLI | CGTACG | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 1 cut(s) | 337 |
| PsuI | RGATCY | 1 cut(s) | 335 |
| PvuII | CAGCTG | 1 cut(s) | 352 |
| RruI | TCGCGA | 1 cut(s) | 413 |
| RsaI | GTAC | 2 cut(s) | 185, 425 |
| RsaNI | GTAC | 2 cut(s) | 184, 424 |
| SacI | GAGCTC | 1 cut(s) | 321 |
| SaqAI | TTAA | 2 cut(s) | 93, 230 |
| SatI | GCNGC | 4 cut(s) | 77, 213, 309, 350 |
| Sau3AI | GATC | 3 cut(s) | 9, 111, 335 |
| ScrFI | CCNGG | 2 cut(s) | 191, 325 |
| SduI | GDGCHC | 1 cut(s) | 321 |
| SfcI | CTRYAG | 1 cut(s) | 250 |
| SmlI | CTYRAG | 2 cut(s) | 229, 380 |
| SmoI | CTYRAG | 2 cut(s) | 229, 380 |
| Sse9I | AATT | 1 cut(s) | 407 |
| SsiI | CCGC | 1 cut(s) | 212 |
| SspMI | CTAG | 3 cut(s) | 29, 53, 267 |
| SstI | GAGCTC | 1 cut(s) | 321 |
| StyD4I | CCNGG | 2 cut(s) | 189, 323 |
| StyI | CCWWGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 2 cut(s) | 208, 274 |
| TaiI | ACGT | 2 cut(s) | 185, 425 |
| TaqI | TCGA | 1 cut(s) | 173 |
| TasI | AATT | 1 cut(s) | 407 |
| TauI | GCSGC | 1 cut(s) | 215 |
| TfiI | GAWTC | 2 cut(s) | 263, 287 |
| Tru1I | TTAA | 2 cut(s) | 93, 230 |
| Tru9I | TTAA | 2 cut(s) | 93, 230 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TseI | GCWGC | 3 cut(s) | 76, 308, 349 |
| TspDTI | ATGAA | 1 cut(s) | 176 |
| TspRI | CASTG | 1 cut(s) | 213 |
| Vha464I | CTTAAG | 1 cut(s) | 229 |
| XapI | RAATTY | 1 cut(s) | 407 |
| XbaI | TCTAGA | 1 cut(s) | 52 |
| XceI | RCATGY | 1 cut(s) | 91 |
| XspI | CTAG | 3 cut(s) | 29, 53, 267 |