Rmu_sc0002724.1_g000002

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002724.1
OG0000057
Physical Location & Seq
Forward (+)
34703 .. 36200
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002724.1_g000002.1.cds

Sequence Viewer

Length: 1455 bp
atgattgcaaccattgggaaatcaagcgcttaccaagaggtttacgttaactgcctaaaccaccggacctccagttataggccgcactctcgtgcaaactgtcgtggtcggtttgacgaacaggtaacaaaaaagttctcactcaacccaccatcaccatacatgtcaacagaacagggtactccccagcctgctactgagggcaacaaaaatcctcctgtccagcctaacgaggttggcaacacaaccaacactgcccaagtggccacgagtgaggaaacgactgattcatttgttcctgttatcgccccggcgaatgctagcattgaggagcgacttgttatctttcaacaaaataatgccgcatataatgaaaggatggaaaaagcccttgcaaaagagcgccgaaggctagatgaggtttcgatctcactaaagaatcttgaagtgagttcgcggcaaacgcagggtcattggcaagatatgaataagaaaagccaagagaaccacaaggagctcgtggatatgatgaccggtcaggccgctcggagcaagcacatctccgttgttatcacgaaccaagccaagcatactgcctcagaattggtggttcttcgcaacgagggatccaatcttacgacccaagtcaccatgcagagagctgagttggaccaggctaaagaggttctgaataaagctttgggggatcctaacgctattgttggttcgcttggacagtcttcaggtactagcaaatacatacctcctaatgctcgagagaagactagcgacagcgctatgacaccatctgcagccgcctctgctttagcaacaaaaaacaatgagaaagccctgaataggatgttgagaaccgttgaaggcaatcctgctaatcctattgcgtttactcaatacgacagcgatagggcagagaatgtctatgaagaacttccagggaatcactatggcattaaccaggctggcacttcaatcaagataacgaccctggtaaaggatgtgaccgcgccagctataaccctgcagcaatccactattcccttaacaattcaccttgggaaaggaacaatgaccgctagccagactgtacctttgcagaatgttctccatactgtggcaacacctccacctcctggtccgaacaatgtgagacgcgacgaggttgaggagatgatcaggttagctaaccctagggcccacctagagggggtttatgagggacctttctcactgtatataatgctcgcgccttttcctagaggctacaaaaatatcatattctctactttttcaagagaggatactgaggatgtggcaacccatctggccaggtttagggtgcaatgcagcaaataccagaatgatgacatcctcaagtgcaggatctttgacacttctctatctggcgtagcttttagatggttttctaaactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

484

Amino Acids

53.49

Weight (kDa)

8.48

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1132, 1151
AccBSI CCGCTC 1 cut(s) 545
AccII CGCG 4 cut(s) 457, 1025, 1173, 1265
AciI CCGC 7 cut(s) 83, 363, 457, 543, 816, 1023, 1092
AclWI GGATC 5 cut(s) 621, 634, 701, 714, 1409
AcoI YGGCCR 2 cut(s) 264, 1344
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 3 cut(s) 181, 748, 1107
AfeI AGCGCT 2 cut(s) 28, 796
AfiI CCNNNNNNNGG 8 cut(s) 78, 858, 1012, 1132, 1151, 1222, 1225, 1353
AflIII ACRYGT 1 cut(s) 162
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 5 cut(s) 350, 446, 878, 990, 1311
AjnI CCWGG 6 cut(s) 672, 952, 975, 1005, 1150, 1346
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 6 cut(s) 517, 662, 698, 1031, 1202, 1430
AluI AGCT 6 cut(s) 517, 662, 698, 1031, 1202, 1430
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 1162
AlwI GGATC 5 cut(s) 621, 634, 701, 714, 1409
Ama87I CYCGRG 1 cut(s) 774
Aor51HI AGCGCT 2 cut(s) 28, 796
AoxI GGCC 5 cut(s) 80, 264, 540, 1212, 1344
ApaI GGGCCC 1 cut(s) 1216
ApeKI GCWGC 3 cut(s) 812, 1042, 1365
ArsI GACNNNNNNTTYG 4 cut(s) 454, 486, 1093, 1125
AsiGI ACCGGT 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 948
AspA2I CCTAGG 1 cut(s) 1208
AspLEI GCGC 5 cut(s) 29, 405, 797, 1027, 1267
AspS9I GGNCC 6 cut(s) 66, 670, 1154, 1212, 1213, 1238
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 147, 640, 1061
AsuNHI GCTAGC 2 cut(s) 320, 1094
AvaI CYCGRG 1 cut(s) 774
AvaII GGWCC 4 cut(s) 66, 670, 1154, 1238
AvrII CCTAGG 1 cut(s) 1208
BaeGI GKGCMC 1 cut(s) 1216
BalI TGGCCA 2 cut(s) 266, 1346
BamHI GGATCC 2 cut(s) 626, 706
BanII GRGCYC 2 cut(s) 519, 1216
BauI CACGAG 3 cut(s) 90, 268, 518
BbsI GAAGAC 2 cut(s) 732, 788
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 824, 1054, 1377
BccI CCATC 5 cut(s) 160, 373, 814, 1347, 1431
BciT130I CCWGG 6 cut(s) 674, 954, 977, 1007, 1152, 1348
BciVI GTATCC 1 cut(s) 1312
BclI TGATCA 1 cut(s) 1191
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 1162
BfaI CTAG 8 cut(s) 321, 413, 750, 786, 1095, 1209, 1220, 1275
BfmI CTRYAG 2 cut(s) 810, 1040
BfoI RGCGCY 3 cut(s) 30, 406, 798
BfuI GTATCC 1 cut(s) 1312
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 8 cut(s) 83, 363, 458, 543, 813, 816, 1043, 1366
BlnI CCTAGG 1 cut(s) 1208
BlsI GCNGC 8 cut(s) 84, 364, 459, 544, 814, 817, 1044, 1367
Bme1390I CCNGG 7 cut(s) 311, 674, 954, 977, 1007, 1152, 1348
Bme18I GGWCC 4 cut(s) 66, 670, 1154, 1238
BmeT110I CYCGRG 1 cut(s) 774
BmgT120I GGNCC 6 cut(s) 66, 670, 1154, 1212, 1213, 1238
BmiI GGNNCC 4 cut(s) 628, 708, 1214, 1239
BmrFI CCNGG 7 cut(s) 311, 674, 954, 977, 1007, 1152, 1348
BmtI GCTAGC 2 cut(s) 324, 1098
BoxI GACNNNNGTC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 732, 788
BpmI CTGGAG 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 1376
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 5 cut(s) 309, 953, 1005, 1072, 1208
BsaWI WCCGGW 2 cut(s) 63, 533
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 8 cut(s) 78, 858, 1012, 1132, 1151, 1222, 1225, 1353
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 1367
BseBI CCWGG 6 cut(s) 674, 954, 977, 1007, 1152, 1348
BseDI CCNNGG 5 cut(s) 309, 953, 1005, 1072, 1208
BseGI GGATG 5 cut(s) 384, 867, 1021, 1333, 1386
BseLI CCNNNNNNNGG 8 cut(s) 78, 858, 1012, 1132, 1151, 1222, 1225, 1353
BseMI GCAATG 1 cut(s) 1367
BseMII CTCAG 4 cut(s) 189, 612, 654, 1314
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 344, 1199
BseSI GKGCMC 1 cut(s) 1216
BseXI GCAGC 3 cut(s) 824, 1054, 1377
BseYI CCCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 1417
Bsh1236I CGCG 4 cut(s) 457, 1025, 1173, 1265
BshFI GGCC 5 cut(s) 82, 266, 542, 1214, 1346
BshTI ACCGGT 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 3 cut(s) 64, 311, 534
BslFI GGGAC 1 cut(s) 1251
BslI CCNNNNNNNGG 8 cut(s) 78, 858, 1012, 1132, 1151, 1222, 1225, 1353
BsmAI GTCTC 1 cut(s) 1162
BsmBI CGTCTC 1 cut(s) 1162
BsmFI GGGAC 1 cut(s) 1251
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 5 cut(s) 82, 266, 542, 1214, 1346
BsoBI CYCGRG 1 cut(s) 774
Bsp120I GGGCCC 1 cut(s) 1212
Bsp1286I GDGCHC 2 cut(s) 519, 1216
Bsp143I GATC 5 cut(s) 426, 626, 706, 1191, 1401
BspACI CCGC 7 cut(s) 83, 363, 457, 543, 816, 1023, 1092
BspANI GGCC 5 cut(s) 82, 266, 542, 1214, 1346
BspCNI CTCAG 4 cut(s) 190, 611, 655, 1315
BspFNI CGCG 4 cut(s) 457, 1025, 1173, 1265
BspLI GGNNCC 4 cut(s) 628, 708, 1214, 1239
BspMAI CTGCAG 2 cut(s) 814, 1044
BspOI GCTAGC 2 cut(s) 324, 1098
BspPI GGATC 5 cut(s) 621, 634, 701, 714, 1409
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 1367
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 5 cut(s) 309, 953, 1005, 1072, 1208
BssMI GATC 5 cut(s) 426, 626, 706, 1191, 1401
BssSI CACGAG 3 cut(s) 90, 268, 518
BssT1I CCWWGG 2 cut(s) 1072, 1208
Bst2BI CACGAG 3 cut(s) 90, 268, 518
Bst2UI CCWGG 6 cut(s) 674, 954, 977, 1007, 1152, 1348
Bst4CI ACNGT 7 cut(s) 101, 738, 874, 1105, 1132, 1251, 1452
BstC8I GCNNGC 7 cut(s) 192, 322, 554, 982, 1029, 1096, 1263
BstDEI CTNAG 4 cut(s) 198, 598, 663, 1323
BstENI CCTNNNNNAGG 1 cut(s) 1010
BstF5I GGATG 5 cut(s) 384, 867, 1021, 1333, 1386
BstFNI CGCG 4 cut(s) 457, 1025, 1173, 1265
BstH2I RGCGCY 3 cut(s) 30, 406, 798
BstHHI GCGC 5 cut(s) 29, 405, 797, 1027, 1267
BstKTI GATC 5 cut(s) 429, 629, 709, 1194, 1404
BstMAI GTCTC 1 cut(s) 1162
BstMBI GATC 5 cut(s) 426, 626, 706, 1191, 1401
BstMWI GCNNNNNNNGC 4 cut(s) 263, 409, 463, 821
BstNI CCWGG 6 cut(s) 674, 954, 977, 1007, 1152, 1348
BstNSI RCATGY 1 cut(s) 166
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 7 cut(s) 309, 672, 952, 975, 1005, 1150, 1346
BstSFI CTRYAG 2 cut(s) 810, 1040
BstSLI GKGCMC 1 cut(s) 1216
BstUI CGCG 4 cut(s) 457, 1025, 1173, 1265
BstV1I GCAGC 3 cut(s) 824, 1054, 1377
BstV2I GAAGAC 2 cut(s) 732, 788
BstX2I RGATCY 3 cut(s) 626, 706, 1401
BstYI RGATCY 3 cut(s) 626, 706, 1401
BsuI GTATCC 1 cut(s) 1312
BsuRI GGCC 5 cut(s) 82, 266, 542, 1214, 1346
BtsCI GGATG 5 cut(s) 384, 867, 1021, 1333, 1386
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 1247
Cac8I GCNNGC 7 cut(s) 192, 322, 554, 982, 1029, 1096, 1263
CfoI GCGC 5 cut(s) 29, 405, 797, 1027, 1267
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 6 cut(s) 66, 670, 1154, 1212, 1213, 1238
CseI GACGC 1 cut(s) 1179
Csp6I GTAC 3 cut(s) 180, 747, 1106
CspAI ACCGGT 1 cut(s) 533
CviAII CATG 2 cut(s) 163, 652
CviQI GTAC 3 cut(s) 180, 747, 1106
DdeI CTNAG 4 cut(s) 198, 598, 663, 1323
DpnI GATC 5 cut(s) 428, 628, 708, 1193, 1403
DpnII GATC 5 cut(s) 426, 626, 706, 1191, 1401
EaeI YGGCCR 2 cut(s) 264, 1344
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 1072, 1208
Eco24I GRGCYC 2 cut(s) 519, 1216
Eco47I GGWCC 4 cut(s) 66, 670, 1154, 1238
Eco47III AGCGCT 2 cut(s) 28, 796
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 1010
EcoO109I RGGNCCY 2 cut(s) 1212, 1238
EcoRII CCWGG 6 cut(s) 672, 952, 975, 1005, 1150, 1346
EcoT14I CCWWGG 2 cut(s) 1072, 1208
EcoT38I GRGCYC 2 cut(s) 519, 1216
ErhI CCWWGG 2 cut(s) 1072, 1208
Esp3I CGTCTC 1 cut(s) 1162
FaeI CATG 2 cut(s) 166, 655
FaqI GGGAC 1 cut(s) 1251
FatI CATG 2 cut(s) 162, 651
FbaI TGATCA 1 cut(s) 1191
Fnu4HI GCNGC 8 cut(s) 83, 363, 458, 543, 813, 816, 1043, 1366
FokI GGATG 5 cut(s) 391, 874, 1028, 1340, 1373
FriOI GRGCYC 2 cut(s) 519, 1216
Fsp4HI GCNGC 8 cut(s) 83, 363, 458, 543, 813, 816, 1043, 1366
FspBI CTAG 8 cut(s) 321, 413, 750, 786, 1095, 1209, 1220, 1275
GlaI GCGC 5 cut(s) 28, 404, 796, 1026, 1266
GluI GCNGC 8 cut(s) 83, 363, 458, 543, 813, 816, 1043, 1366
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 55
HaeII RGCGCY 3 cut(s) 30, 406, 798
HaeIII GGCC 5 cut(s) 82, 266, 542, 1214, 1346
HapII CCGG 3 cut(s) 64, 311, 534
HgaI GACGC 1 cut(s) 1179
HhaI GCGC 5 cut(s) 29, 405, 797, 1027, 1267
Hin1II CATG 2 cut(s) 166, 655
Hin6I GCGC 5 cut(s) 27, 403, 795, 1025, 1265
HinP1I GCGC 5 cut(s) 27, 403, 795, 1025, 1265
HincII GTYRAC 2 cut(s) 49, 168
HindII GTYRAC 2 cut(s) 49, 168
HindIII AAGCTT 1 cut(s) 696
HinfI GANTC 3 cut(s) 287, 439, 958
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 3 cut(s) 64, 311, 534
HphI GGTGA 3 cut(s) 147, 640, 1061
Hpy166II GTNNAC 4 cut(s) 43, 49, 168, 906
Hpy188I TCNGA 4 cut(s) 549, 601, 690, 1158
Hpy188III TCNNGA 5 cut(s) 443, 574, 776, 994, 1311
Hpy8I GTNNAC 4 cut(s) 43, 49, 168, 906
Hpy99I CGWCG 1 cut(s) 1178
HpyAV CCTTC 2 cut(s) 402, 872
HpyCH4III ACNGT 7 cut(s) 101, 738, 874, 1105, 1132, 1251, 1452
HpyCH4IV ACGT 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 409, 463, 821
HpyF3I CTNAG 4 cut(s) 198, 598, 663, 1323
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 2 cut(s) 166, 655
HspAI GCGC 5 cut(s) 27, 403, 795, 1025, 1265
Ksp22I TGATCA 1 cut(s) 1191
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 5 cut(s) 426, 626, 706, 1191, 1401
LmnI GCTCC 3 cut(s) 331, 514, 549
Lsp1109I GCAGC 3 cut(s) 824, 1054, 1377
MaeI CTAG 8 cut(s) 321, 413, 750, 786, 1095, 1209, 1220, 1275
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 124, 646, 1018
MalI GATC 5 cut(s) 428, 628, 708, 1193, 1403
MbiI CCGCTC 1 cut(s) 545
MboI GATC 5 cut(s) 426, 626, 706, 1191, 1401
MboII GAAGA 4 cut(s) 605, 732, 793, 956
MflI RGATCY 3 cut(s) 626, 706, 1401
MhlI GDGCHC 2 cut(s) 519, 1216
MlsI TGGCCA 2 cut(s) 266, 1346
MluCI AATT 2 cut(s) 602, 1065
MluNI TGGCCA 2 cut(s) 266, 1346
MmeI TCCRAC 1 cut(s) 648
Mox20I TGGCCA 2 cut(s) 266, 1346
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 2 cut(s) 266, 1346
MseI TTAA 3 cut(s) 48, 972, 1061
MslI CAYNNNNRTG 1 cut(s) 90
Msp20I TGGCCA 2 cut(s) 266, 1346
MspI CCGG 3 cut(s) 64, 311, 534
MspR9I CCNGG 7 cut(s) 311, 674, 954, 977, 1007, 1152, 1348
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 6 cut(s) 674, 954, 977, 1007, 1152, 1348
MvnI CGCG 4 cut(s) 457, 1025, 1173, 1265
MwoI GCNNNNNNNGC 4 cut(s) 263, 409, 463, 821
NciI CCSGG 1 cut(s) 311
NdeII GATC 5 cut(s) 426, 626, 706, 1191, 1401
NheI GCTAGC 2 cut(s) 320, 1094
NlaIII CATG 2 cut(s) 166, 655
NlaIV GGNNCC 4 cut(s) 628, 708, 1214, 1239
NmuCI GTSAC 2 cut(s) 646, 1018
NspI RCATGY 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 774
PciI ACATGT 1 cut(s) 162
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 3 cut(s) 287, 439, 958
PflMI CCANNNNNTGG 2 cut(s) 1132, 1151
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 8 cut(s) 84, 364, 459, 544, 814, 817, 1044, 1367
PpuMI RGGWCCY 1 cut(s) 1238
PscI ACATGT 1 cut(s) 162
PshAI GACNNNNGTC 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 1238
Psp6I CCWGG 6 cut(s) 672, 952, 975, 1005, 1150, 1346
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 6 cut(s) 672, 952, 975, 1005, 1150, 1346
PspN4I GGNNCC 4 cut(s) 628, 708, 1214, 1239
PspOMI GGGCCC 1 cut(s) 1212
PspPI GGNCC 6 cut(s) 66, 670, 1154, 1212, 1213, 1238
PspPPI RGGWCCY 1 cut(s) 1238
PstI CTGCAG 2 cut(s) 814, 1044
PsuI RGATCY 3 cut(s) 626, 706, 1401
RsaI GTAC 3 cut(s) 181, 748, 1107
RsaNI GTAC 3 cut(s) 180, 747, 1106
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 3 cut(s) 48, 972, 1061
SatI GCNGC 8 cut(s) 83, 363, 458, 543, 813, 816, 1043, 1366
Sau3AI GATC 5 cut(s) 426, 626, 706, 1191, 1401
Sau96I GGNCC 6 cut(s) 66, 670, 1154, 1212, 1213, 1238
ScrFI CCNGG 7 cut(s) 311, 674, 954, 977, 1007, 1152, 1348
SduI GDGCHC 2 cut(s) 519, 1216
SfcI CTRYAG 2 cut(s) 810, 1040
Sfr274I CTCGAG 1 cut(s) 774
SinI GGWCC 4 cut(s) 66, 670, 1154, 1238
SlaI CTCGAG 1 cut(s) 774
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 774, 1391
SmoI CTYRAG 2 cut(s) 774, 1391
Sse9I AATT 2 cut(s) 602, 1065
SsiI CCGC 7 cut(s) 83, 363, 457, 543, 816, 1023, 1092
SspMI CTAG 8 cut(s) 321, 413, 750, 786, 1095, 1209, 1220, 1275
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 7 cut(s) 309, 672, 952, 975, 1005, 1150, 1346
StyI CCWWGG 2 cut(s) 1072, 1208
TaaI ACNGT 7 cut(s) 101, 738, 874, 1105, 1132, 1251, 1452
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 425, 775
TasI AATT 2 cut(s) 602, 1065
TauI GCSGC 5 cut(s) 85, 365, 460, 545, 818
TfiI GAWTC 3 cut(s) 287, 439, 958
Tru1I TTAA 3 cut(s) 48, 972, 1061
Tru9I TTAA 3 cut(s) 48, 972, 1061
TscAI CASTG 2 cut(s) 259, 1254
TseFI GTSAC 2 cut(s) 646, 1018
TseI GCWGC 3 cut(s) 812, 1042, 1365
Tsp45I GTSAC 2 cut(s) 646, 1018
TspDTI ATGAA 4 cut(s) 279, 387, 500, 957
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 2 cut(s) 259, 1254
Van91I CCANNNNNTGG 2 cut(s) 1132, 1151
VpaK11BI GGWCC 4 cut(s) 66, 670, 1154, 1238
XagI CCTNNNNNAGG 1 cut(s) 1010
XceI RCATGY 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 774
XmaJI CCTAGG 1 cut(s) 1208
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 8 cut(s) 321, 413, 750, 786, 1095, 1209, 1220, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.