Rroxscaffold_3G00272440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000057
Physical Location & Seq
Reverse (-)
64581638 .. 64583135
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272440.1

Sequence Viewer

Length: 1044 bp
ATGATCCGGTCAATGGGCGAACTCATCACGGAGGTGGGCAGCTTTGAGCATCTCCTCGCAGAAACCGACGCAAGGAAGAATGAGTCCAAGGGAACATATGTACCAGGAAAACATCGCACCGTATCGGCCCCGAGCTACCGGCCGACTACTTATGACCCTTACTATCGTCATCACGGTGAGGAGTTGGTTCGGGATGACGATGAGGAAGAAGAGATTGACATCGCCGCTTATGAACCGACCGGGAGGAAGGAGCCGACCTTGAAGCAACCGAAACTTTCCAATGAACCTGTCAAGTTCAAATCGATGGCCTTCACCAAACCCGAGTTCGCGACATACACATATGATGCCAACAAGGCACATGAGATTCTCGATGAGATGATCGCCGCGAAGATGGTGAAGACCGACTTTGGACCTTTTCCTCACCCGGACCAACCGAAAGGGAAGAAATACGCAAATTTCACAACTTGTGGAATCACAATACCTCGGACTGCAGAGGCCGCGGTTGCTCGGAAACAAGAGGAGAGGGTTGCGAACAAGCACAAAGATGTTCGACCAAACCCTATATCCCGCCTGCTCCACCACCGCCGCAAAGAAGGAAGGTGGTATACCGGAGAAACGGGGAAGGCGGTGGAAATAAGCCCTTCCAAGAAGAGGAAACTGCAGCGTAGGTTTGGGGAAGCCAAACGCGCGCTAGAGGCTCTAGATCGGGGCACGATTAAGCCCTCACAATTGGTCAAGTCACCCGAGCAATATCCGAAGGAGATGGAGGCACCGGTTGCTAAGCCATTGATGGCACCCCGCAGCCTTCACGGACGAGCGAGCTCCGCAACGGGGATATCTAAGCCCGGTGTTTTTTGTAGGATCGCCGAAGCGAGAACACCTCCACCAGCTCGGAAGGAGGGTTCGCCAACTTGGCGGCCACATGTCGGGCGCAGGTTGTTTCGCGAGGAACCGCAGGCTAAGCCTTCGGGTTTTGAGAGACCGGGGAGCGAGGATAAGACCGCCGATACTTTACGGTTGTTTCGCGAGGAACCGAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.32

Weight (kDa)

9.6

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 924
AccB1I GGYRCC 2 cut(s) 769, 793
AccI GTMKAC 1 cut(s) 605
AccII CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
AclWI GGATC 1 cut(s) 869
AcoI YGGCCR 2 cut(s) 140, 917
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 5 cut(s) 13, 72, 651, 831, 926
AflIII ACRYGT 1 cut(s) 922
AgeI ACCGGT 1 cut(s) 772
AgsI TTSAA 2 cut(s) 262, 298
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 886, 918
AluBI AGCT 4 cut(s) 42, 135, 822, 890
AluI AGCT 4 cut(s) 42, 135, 822, 890
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 1 cut(s) 973
AlwI GGATC 1 cut(s) 869
Ama87I CYCGRG 3 cut(s) 130, 320, 743
AoxI GGCC 5 cut(s) 126, 140, 306, 495, 917
ApeKI GCWGC 3 cut(s) 39, 661, 801
ApoI RAATTY 1 cut(s) 454
AsiGI ACCGGT 1 cut(s) 772
AspLEI GCGC 3 cut(s) 689, 691, 933
AspS9I GGNCC 3 cut(s) 127, 410, 427
AsuC2I CCSGG 4 cut(s) 241, 425, 846, 984
AsuHPI GGTGA 5 cut(s) 188, 304, 406, 413, 732
AvaI CYCGRG 3 cut(s) 130, 320, 743
AvaII GGWCC 2 cut(s) 410, 427
BaeGI GKGCMC 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BanI GGYRCC 2 cut(s) 769, 793
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 589, 621
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 3 cut(s) 51, 673, 813
BccI CCATC 4 cut(s) 298, 385, 757, 784
BciT130I CCWGG 1 cut(s) 105
BcnI CCSGG 4 cut(s) 241, 425, 846, 984
BcoDI GTCTC 1 cut(s) 973
BfaI CTAG 2 cut(s) 692, 701
BfmI CTRYAG 2 cut(s) 489, 659
BfuAI ACCTGC 1 cut(s) 924
BglI GCCNNNNNGGC 2 cut(s) 353, 913
BisI GCNGC 8 cut(s) 40, 225, 384, 498, 586, 662, 802, 917
BlpI GCTNAGC 2 cut(s) 780, 960
BlsI GCNGC 8 cut(s) 41, 226, 385, 499, 587, 663, 803, 918
Bme1390I CCNGG 5 cut(s) 105, 241, 425, 846, 984
Bme18I GGWCC 2 cut(s) 410, 427
BmeT110I CYCGRG 3 cut(s) 130, 320, 743
BmgT120I GGNCC 3 cut(s) 127, 410, 427
BmiI GGNNCC 6 cut(s) 129, 252, 771, 795, 951, 1032
BmrFI CCNGG 5 cut(s) 105, 241, 425, 846, 984
BmsI GCATC 2 cut(s) 58, 334
BpiI GAAGAC 1 cut(s) 404
BplI GAGNNNNNCTC 2 cut(s) 865, 897
Bpu1102I GCTNAGC 2 cut(s) 780, 960
BpuMI CCSGG 4 cut(s) 241, 425, 846, 984
Bsa29I ATCGAT 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 4 cut(s) 87, 482, 498, 983
BsaWI WCCGGW 3 cut(s) 6, 608, 772
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 72, 651, 831, 926
Bse118I RCCGGY 2 cut(s) 138, 772
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 87, 482, 498, 983
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 5 cut(s) 13, 72, 651, 831, 926
BsePI GCGCGC 1 cut(s) 687
BseRI GAGGAG 3 cut(s) 44, 194, 533
BseSI GKGCMC 1 cut(s) 713
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 3 cut(s) 51, 673, 813
Bsh1236I CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
Bsh1285I CGRYCG 2 cut(s) 143, 240
BshFI GGCC 5 cut(s) 128, 142, 308, 497, 919
BshNI GGYRCC 2 cut(s) 769, 793
BshTI ACCGGT 1 cut(s) 772
BshVI ATCGAT 1 cut(s) 302
BsiEI CGRYCG 2 cut(s) 143, 240
BsiHKAI GWGCWC 1 cut(s) 824
BsiHKCI CYCGRG 3 cut(s) 130, 320, 743
BsiSI CCGG 8 cut(s) 7, 139, 240, 425, 609, 773, 846, 983
BslI CCNNNNNNNGG 5 cut(s) 13, 72, 651, 831, 926
BsmAI GTCTC 1 cut(s) 973
BsnI GGCC 5 cut(s) 128, 142, 308, 497, 919
Bso31I GGTCTC 1 cut(s) 973
BsoBI CYCGRG 3 cut(s) 130, 320, 743
Bsp1286I GDGCHC 2 cut(s) 713, 824
Bsp143I GATC 4 cut(s) 3, 378, 703, 861
Bsp1720I GCTNAGC 2 cut(s) 780, 960
Bsp68I TCGCGA 3 cut(s) 329, 945, 1026
BspANI GGCC 5 cut(s) 128, 142, 308, 497, 919
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
BspLI GGNNCC 6 cut(s) 129, 252, 771, 795, 951, 1032
BspMAI CTGCAG 2 cut(s) 493, 663
BspMI ACCTGC 1 cut(s) 924
BspPI GGATC 1 cut(s) 869
BspT107I GGYRCC 2 cut(s) 769, 793
BspTNI GGTCTC 1 cut(s) 973
BsrFI RCCGGY 2 cut(s) 138, 772
BssAI RCCGGY 2 cut(s) 138, 772
BssECI CCNNGG 4 cut(s) 87, 482, 498, 983
BssHII GCGCGC 1 cut(s) 687
BssMI GATC 4 cut(s) 3, 378, 703, 861
BssNAI GTATAC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 121, 176, 1017
Bst6I CTCTTC 2 cut(s) 204, 644
BstAPI GCANNNNNTGC 1 cut(s) 776
BstC8I GCNNGC 4 cut(s) 572, 689, 820, 957
BstDEI CTNAG 3 cut(s) 780, 840, 960
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
BstHHI GCGC 3 cut(s) 689, 691, 933
BstKTI GATC 4 cut(s) 6, 381, 706, 864
BstMAI GTCTC 1 cut(s) 973
BstMBI GATC 4 cut(s) 3, 378, 703, 861
BstMCI CGRYCG 2 cut(s) 143, 240
BstMWI GCNNNNNNNGC 9 cut(s) 353, 497, 503, 686, 695, 776, 824, 913, 961
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 5 cut(s) 103, 239, 423, 844, 982
BstSFI CTRYAG 2 cut(s) 489, 659
BstSLI GKGCMC 1 cut(s) 713
BstUI CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
BstV1I GCAGC 3 cut(s) 51, 673, 813
BstV2I GAAGAC 1 cut(s) 404
BstZ17I GTATAC 1 cut(s) 606
BstZI CGGCCG 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 5 cut(s) 128, 142, 308, 497, 919
BsuTUI ATCGAT 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 2 cut(s) 98, 205
BtsCI GGATG 1 cut(s) 199
BtuMI TCGCGA 3 cut(s) 329, 945, 1026
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 4 cut(s) 572, 689, 820, 957
CfoI GCGC 3 cut(s) 689, 691, 933
Cfr10I RCCGGY 2 cut(s) 138, 772
Cfr13I GGNCC 3 cut(s) 127, 410, 427
Cfr42I CCGCGG 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 302
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 772
CviAII CATG 2 cut(s) 359, 923
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 3 cut(s) 780, 840, 960
DpnI GATC 4 cut(s) 5, 380, 705, 863
DpnII GATC 4 cut(s) 3, 378, 703, 861
EaeI YGGCCR 2 cut(s) 140, 917
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 204, 644
EarI CTCTTC 2 cut(s) 204, 644
Ecl136II GAGCTC 1 cut(s) 822
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 973
Eco32I GATATC 1 cut(s) 837
Eco47I GGWCC 2 cut(s) 410, 427
Eco52I CGGCCG 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 822
Eco88I CYCGRG 3 cut(s) 130, 320, 743
EcoICRI GAGCTC 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 103
EcoRV GATATC 1 cut(s) 837
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 362, 926
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 2 cut(s) 358, 922
FauI CCCGC 2 cut(s) 575, 806
FauNDI CATATG 2 cut(s) 97, 340
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 8 cut(s) 40, 225, 384, 498, 586, 662, 802, 917
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 8 cut(s) 40, 225, 384, 498, 586, 662, 802, 917
FspBI CTAG 2 cut(s) 692, 701
GlaI GCGC 3 cut(s) 688, 690, 932
GluI GCNGC 8 cut(s) 40, 225, 384, 498, 586, 662, 802, 917
HaeIII GGCC 5 cut(s) 128, 142, 308, 497, 919
HapII CCGG 8 cut(s) 7, 139, 240, 425, 609, 773, 846, 983
HgaI GACGC 1 cut(s) 77
HhaI GCGC 3 cut(s) 689, 691, 933
Hin1II CATG 2 cut(s) 362, 926
Hin6I GCGC 3 cut(s) 687, 689, 931
HinP1I GCGC 3 cut(s) 687, 689, 931
HinfI GANTC 3 cut(s) 83, 364, 471
HpaII CCGG 8 cut(s) 7, 139, 240, 425, 609, 773, 846, 983
HphI GGTGA 5 cut(s) 188, 304, 406, 413, 732
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 4 cut(s) 486, 510, 756, 894
Hpy188III TCNNGA 6 cut(s) 191, 328, 368, 701, 944, 1025
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 121, 176, 1017
HpyCH4V TGCA 2 cut(s) 491, 661
HpyF10VI GCNNNNNNNGC 9 cut(s) 353, 497, 503, 686, 695, 776, 824, 913, 961
HpyF3I CTNAG 3 cut(s) 780, 840, 960
Hsp92II CATG 2 cut(s) 362, 926
HspAI GCGC 3 cut(s) 687, 689, 931
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 4 cut(s) 3, 378, 703, 861
LmnI GCTCC 4 cut(s) 250, 579, 827, 987
Lsp1109I GCAGC 3 cut(s) 51, 673, 813
LweI GCATC 2 cut(s) 58, 334
MaeI CTAG 2 cut(s) 692, 701
MaeIII GTNAC 1 cut(s) 738
MalI GATC 4 cut(s) 5, 380, 705, 863
MboI GATC 4 cut(s) 3, 378, 703, 861
MboII GAAGA 7 cut(s) 88, 218, 221, 400, 409, 454, 661
MfeI CAATTG 1 cut(s) 728
MhlI GDGCHC 2 cut(s) 713, 824
MluCI AATT 2 cut(s) 454, 728
MlyI GAGTC 1 cut(s) 92
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 3 cut(s) 32, 174, 543
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 8 cut(s) 7, 139, 240, 425, 609, 773, 846, 983
MspR9I CCNGG 5 cut(s) 105, 241, 425, 846, 984
MunI CAATTG 1 cut(s) 728
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 7 cut(s) 329, 386, 500, 687, 689, 945, 1026
MwoI GCNNNNNNNGC 9 cut(s) 353, 497, 503, 686, 695, 776, 824, 913, 961
NciI CCSGG 4 cut(s) 241, 425, 846, 984
NdeI CATATG 2 cut(s) 97, 340
NdeII GATC 4 cut(s) 3, 378, 703, 861
NlaIII CATG 2 cut(s) 362, 926
NlaIV GGNNCC 6 cut(s) 129, 252, 771, 795, 951, 1032
NmuCI GTSAC 1 cut(s) 738
NruI TCGCGA 3 cut(s) 329, 945, 1026
NspI RCATGY 1 cut(s) 926
OliI CACNNNNGTG 1 cut(s) 32
PauI GCGCGC 1 cut(s) 687
PciI ACATGT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 364, 471
PinAI ACCGGT 1 cut(s) 772
PkrI GCNGC 8 cut(s) 41, 226, 385, 499, 587, 663, 803, 918
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 922
Psp124BI GAGCTC 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 6 cut(s) 129, 252, 771, 795, 951, 1032
PspPI GGNCC 3 cut(s) 127, 410, 427
PstI CTGCAG 2 cut(s) 493, 663
PteI GCGCGC 1 cut(s) 687
RruI TCGCGA 3 cut(s) 329, 945, 1026
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 3 cut(s) 32, 174, 543
SacI GAGCTC 1 cut(s) 824
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 8 cut(s) 40, 225, 384, 498, 586, 662, 802, 917
Sau3AI GATC 4 cut(s) 3, 378, 703, 861
Sau96I GGNCC 3 cut(s) 127, 410, 427
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 5 cut(s) 105, 241, 425, 846, 984
SduI GDGCHC 2 cut(s) 713, 824
SfaNI GCATC 2 cut(s) 58, 334
SfcI CTRYAG 2 cut(s) 489, 659
Sfr303I CCGCGG 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 2 cut(s) 410, 427
SmiMI CAYNNNNRTG 3 cut(s) 32, 174, 543
Sse9I AATT 2 cut(s) 454, 728
SspMI CTAG 2 cut(s) 692, 701
SstI GAGCTC 1 cut(s) 824
StyD4I CCNGG 5 cut(s) 103, 239, 423, 844, 982
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 121, 176, 1017
TaqI TCGA 3 cut(s) 302, 369, 550
TaqII GACCGA 1 cut(s) 416
TasI AATT 2 cut(s) 454, 728
TauI GCSGC 5 cut(s) 227, 386, 500, 588, 919
TfiI GAWTC 2 cut(s) 364, 471
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TseFI GTSAC 1 cut(s) 738
TseI GCWGC 3 cut(s) 39, 661, 801
Tsp45I GTSAC 1 cut(s) 738
TspDTI ATGAA 2 cut(s) 246, 297
TspGWI ACGGA 2 cut(s) 44, 825
VpaK11BI GGWCC 2 cut(s) 410, 427
XapI RAATTY 1 cut(s) 454
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 605
XspI CTAG 2 cut(s) 692, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.