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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 468 |
| AccI | GTMKAC | 1 cut(s) | 662 |
| AccII | CGCG | 3 cut(s) | 263, 294, 656 |
| AciI | CCGC | 6 cut(s) | 174, 186, 195, 258, 261, 327 |
| AclWI | GGATC | 3 cut(s) | 80, 572, 585 |
| AcoI | YGGCCR | 1 cut(s) | 112 |
| AcsI | RAATTY | 1 cut(s) | 690 |
| AfaI | GTAC | 2 cut(s) | 136, 140 |
| AfeI | AGCGCT | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 236, 468, 490 |
| AgeI | ACCGGT | 1 cut(s) | 229 |
| AgsI | TTSAA | 2 cut(s) | 70, 589 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 635, 667 |
| AluBI | AGCT | 2 cut(s) | 56, 77 |
| AluI | AGCT | 2 cut(s) | 56, 77 |
| Alw26I | GTCTC | 2 cut(s) | 349, 533 |
| AlwI | GGATC | 3 cut(s) | 80, 572, 585 |
| Ama87I | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| Aor51HI | AGCGCT | 1 cut(s) | 94 |
| AoxI | GGCC | 6 cut(s) | 112, 255, 297, 492, 582, 633 |
| ApaI | GGGCCC | 1 cut(s) | 496 |
| ApeKI | GCWGC | 3 cut(s) | 197, 382, 551 |
| ApoI | RAATTY | 1 cut(s) | 690 |
| AsiGI | ACCGGT | 1 cut(s) | 229 |
| AspLEI | GCGC | 4 cut(s) | 7, 95, 294, 685 |
| AspS9I | GGNCC | 2 cut(s) | 492, 493 |
| AsuC2I | CCSGG | 2 cut(s) | 491, 496 |
| AsuHPI | GGTGA | 4 cut(s) | 95, 184, 451, 631 |
| AvaI | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| AxyI | CCTNAGG | 1 cut(s) | 348 |
| BaeGI | GKGCMC | 1 cut(s) | 496 |
| BalI | TGGCCA | 1 cut(s) | 114 |
| BamHI | GGATCC | 1 cut(s) | 577 |
| BanII | GRGCYC | 1 cut(s) | 496 |
| BbvI | GCAGC | 3 cut(s) | 184, 394, 538 |
| BccI | CCATC | 1 cut(s) | 287 |
| BceAI | ACGGC | 2 cut(s) | 103, 438 |
| BcnI | CCSGG | 2 cut(s) | 491, 496 |
| BcoDI | GTCTC | 2 cut(s) | 349, 533 |
| BfoI | RGCGCY | 2 cut(s) | 8, 96 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 680 |
| BisI | GCNGC | 6 cut(s) | 174, 198, 258, 261, 383, 552 |
| BlsI | GCNGC | 6 cut(s) | 175, 199, 259, 262, 384, 553 |
| Bme1390I | CCNGG | 2 cut(s) | 491, 496 |
| BmeT110I | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| BmgT120I | GGNCC | 2 cut(s) | 492, 493 |
| BmiI | GGNNCC | 4 cut(s) | 106, 494, 579, 612 |
| BmrFI | CCNGG | 2 cut(s) | 491, 496 |
| BmsI | GCATC | 1 cut(s) | 661 |
| BpuEI | CTTGAG | 1 cut(s) | 608 |
| BpuMI | CCSGG | 2 cut(s) | 491, 496 |
| BsaAI | YACGTR | 2 cut(s) | 138, 666 |
| BsaJI | CCNNGG | 3 cut(s) | 20, 100, 109 |
| BsaWI | WCCGGW | 2 cut(s) | 122, 229 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 236, 468, 490 |
| Bse118I | RCCGGY | 2 cut(s) | 229, 305 |
| Bse21I | CCTNAGG | 1 cut(s) | 348 |
| BseDI | CCNNGG | 3 cut(s) | 20, 100, 109 |
| BseGI | GGATG | 1 cut(s) | 526 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 236, 468, 490 |
| BseRI | GAGGAG | 3 cut(s) | 470, 473, 476 |
| BseSI | GKGCMC | 1 cut(s) | 496 |
| BseXI | GCAGC | 3 cut(s) | 184, 394, 538 |
| Bsh1236I | CGCG | 3 cut(s) | 263, 294, 656 |
| BshFI | GGCC | 6 cut(s) | 114, 257, 299, 494, 584, 635 |
| BshTI | ACCGGT | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| BsiSI | CCGG | 6 cut(s) | 123, 230, 306, 490, 496, 581 |
| BslFI | GGGAC | 1 cut(s) | 433 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 236, 468, 490 |
| BsmAI | GTCTC | 2 cut(s) | 349, 533 |
| BsmFI | GGGAC | 1 cut(s) | 433 |
| BsnI | GGCC | 6 cut(s) | 114, 257, 299, 494, 584, 635 |
| BsoBI | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| Bsp120I | GGGCCC | 1 cut(s) | 492 |
| Bsp1286I | GDGCHC | 1 cut(s) | 496 |
| Bsp143I | GATC | 2 cut(s) | 85, 577 |
| Bsp68I | TCGCGA | 1 cut(s) | 656 |
| BspACI | CCGC | 6 cut(s) | 174, 186, 195, 258, 261, 327 |
| BspANI | GGCC | 6 cut(s) | 114, 257, 299, 494, 584, 635 |
| BspFNI | CGCG | 3 cut(s) | 263, 294, 656 |
| BspLI | GGNNCC | 4 cut(s) | 106, 494, 579, 612 |
| BspPI | GGATC | 3 cut(s) | 80, 572, 585 |
| BsrFI | RCCGGY | 2 cut(s) | 229, 305 |
| BssAI | RCCGGY | 2 cut(s) | 229, 305 |
| BssECI | CCNNGG | 3 cut(s) | 20, 100, 109 |
| BssMI | GATC | 2 cut(s) | 85, 577 |
| BssNAI | GTATAC | 1 cut(s) | 663 |
| BssT1I | CCWWGG | 2 cut(s) | 100, 109 |
| Bst1107I | GTATAC | 1 cut(s) | 663 |
| Bst6I | CTCTTC | 3 cut(s) | 379, 501, 531 |
| BstBAI | YACGTR | 2 cut(s) | 138, 666 |
| BstC8I | GCNNGC | 5 cut(s) | 116, 171, 225, 272, 307 |
| BstDEI | CTNAG | 1 cut(s) | 348 |
| BstF5I | GGATG | 1 cut(s) | 526 |
| BstFNI | CGCG | 3 cut(s) | 263, 294, 656 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 96 |
| BstHHI | GCGC | 4 cut(s) | 7, 95, 294, 685 |
| BstKTI | GATC | 2 cut(s) | 88, 580 |
| BstMAI | GTCTC | 2 cut(s) | 349, 533 |
| BstMBI | GATC | 2 cut(s) | 85, 577 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 13, 111, 194, 680 |
| BstNSI | RCATGY | 1 cut(s) | 410 |
| BstSCI | CCNGG | 2 cut(s) | 489, 494 |
| BstSLI | GKGCMC | 1 cut(s) | 496 |
| BstSNI | TACGTA | 2 cut(s) | 138, 666 |
| BstUI | CGCG | 3 cut(s) | 263, 294, 656 |
| BstV1I | GCAGC | 3 cut(s) | 184, 394, 538 |
| BstX2I | RGATCY | 1 cut(s) | 577 |
| BstYI | RGATCY | 1 cut(s) | 577 |
| BstZ17I | GTATAC | 1 cut(s) | 663 |
| Bsu36I | CCTNAGG | 1 cut(s) | 348 |
| BsuRI | GGCC | 6 cut(s) | 114, 257, 299, 494, 584, 635 |
| BtsCI | GGATG | 1 cut(s) | 526 |
| BtuMI | TCGCGA | 1 cut(s) | 656 |
| Cac8I | GCNNGC | 5 cut(s) | 116, 171, 225, 272, 307 |
| CfoI | GCGC | 4 cut(s) | 7, 95, 294, 685 |
| Cfr10I | RCCGGY | 2 cut(s) | 229, 305 |
| Cfr13I | GGNCC | 2 cut(s) | 492, 493 |
| CseI | GACGC | 1 cut(s) | 252 |
| Csp6I | GTAC | 2 cut(s) | 135, 139 |
| CspAI | ACCGGT | 1 cut(s) | 229 |
| CviAII | CATG | 4 cut(s) | 267, 398, 407, 686 |
| CviQI | GTAC | 2 cut(s) | 135, 139 |
| DdeI | CTNAG | 1 cut(s) | 348 |
| DpnI | GATC | 2 cut(s) | 87, 579 |
| DpnII | GATC | 2 cut(s) | 85, 577 |
| EaeI | YGGCCR | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 3 cut(s) | 379, 501, 531 |
| EarI | CTCTTC | 3 cut(s) | 379, 501, 531 |
| Eco105I | TACGTA | 2 cut(s) | 138, 666 |
| Eco130I | CCWWGG | 2 cut(s) | 100, 109 |
| Eco24I | GRGCYC | 1 cut(s) | 496 |
| Eco47III | AGCGCT | 1 cut(s) | 94 |
| Eco81I | CCTNAGG | 1 cut(s) | 348 |
| Eco88I | CYCGRG | 4 cut(s) | 57, 364, 606, 647 |
| EcoT14I | CCWWGG | 2 cut(s) | 100, 109 |
| EcoT38I | GRGCYC | 1 cut(s) | 496 |
| ErhI | CCWWGG | 2 cut(s) | 100, 109 |
| FaeI | CATG | 4 cut(s) | 270, 401, 410, 689 |
| FaqI | GGGAC | 1 cut(s) | 433 |
| FatI | CATG | 4 cut(s) | 266, 397, 406, 685 |
| FblI | GTMKAC | 1 cut(s) | 662 |
| Fnu4HI | GCNGC | 6 cut(s) | 174, 198, 258, 261, 383, 552 |
| FokI | GGATG | 1 cut(s) | 533 |
| FriOI | GRGCYC | 1 cut(s) | 496 |
| Fsp4HI | GCNGC | 6 cut(s) | 174, 198, 258, 261, 383, 552 |
| GlaI | GCGC | 4 cut(s) | 6, 94, 293, 684 |
| GluI | GCNGC | 6 cut(s) | 174, 198, 258, 261, 383, 552 |
| HaeII | RGCGCY | 2 cut(s) | 8, 96 |
| HaeIII | GGCC | 6 cut(s) | 114, 257, 299, 494, 584, 635 |
| HapII | CCGG | 6 cut(s) | 123, 230, 306, 490, 496, 581 |
| HgaI | GACGC | 1 cut(s) | 252 |
| HhaI | GCGC | 4 cut(s) | 7, 95, 294, 685 |
| Hin1II | CATG | 4 cut(s) | 270, 401, 410, 689 |
| Hin6I | GCGC | 4 cut(s) | 5, 93, 292, 683 |
| HinP1I | GCGC | 4 cut(s) | 5, 93, 292, 683 |
| HincII | GTYRAC | 1 cut(s) | 433 |
| HindII | GTYRAC | 1 cut(s) | 433 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| HinfI | GANTC | 2 cut(s) | 147, 371 |
| HpaII | CCGG | 6 cut(s) | 123, 230, 306, 490, 496, 581 |
| HphI | GGTGA | 4 cut(s) | 95, 184, 451, 631 |
| Hpy166II | GTNNAC | 2 cut(s) | 433, 663 |
| Hpy188I | TCNGA | 4 cut(s) | 90, 146, 284, 520 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 608, 655, 696 |
| Hpy8I | GTNNAC | 2 cut(s) | 433, 663 |
| Hpy99I | CGWCG | 2 cut(s) | 568, 661 |
| HpyAV | CCTTC | 5 cut(s) | 153, 192, 331, 410, 646 |
| HpyCH4IV | ACGT | 3 cut(s) | 137, 659, 665 |
| HpyCH4V | TGCA | 3 cut(s) | 200, 406, 451 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 13, 111, 194, 680 |
| HpyF3I | CTNAG | 1 cut(s) | 348 |
| HpySE526I | ACGT | 3 cut(s) | 137, 659, 665 |
| Hsp92II | CATG | 4 cut(s) | 270, 401, 410, 689 |
| HspAI | GCGC | 4 cut(s) | 5, 93, 292, 683 |
| KroI | GCCGGC | 1 cut(s) | 305 |
| KroNI | GCCGGC | 1 cut(s) | 307 |
| Kzo9I | GATC | 2 cut(s) | 85, 577 |
| LmnI | GCTCC | 1 cut(s) | 110 |
| LpnPI | CCDG | 7 cut(s) | 128, 136, 243, 319, 503, 509, 594 |
| Lsp1109I | GCAGC | 3 cut(s) | 184, 394, 538 |
| LweI | GCATC | 1 cut(s) | 661 |
| MaeII | ACGT | 3 cut(s) | 137, 659, 665 |
| MalI | GATC | 2 cut(s) | 87, 579 |
| MboI | GATC | 2 cut(s) | 85, 577 |
| MboII | GAAGA | 5 cut(s) | 366, 369, 518, 545, 548 |
| MflI | RGATCY | 1 cut(s) | 577 |
| MhlI | GDGCHC | 1 cut(s) | 496 |
| MlsI | TGGCCA | 1 cut(s) | 114 |
| MluCI | AATT | 1 cut(s) | 690 |
| MluNI | TGGCCA | 1 cut(s) | 114 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| Mox20I | TGGCCA | 1 cut(s) | 114 |
| MroNI | GCCGGC | 1 cut(s) | 305 |
| MscI | TGGCCA | 1 cut(s) | 114 |
| Msp20I | TGGCCA | 1 cut(s) | 114 |
| MspA1I | CMGCKG | 1 cut(s) | 197 |
| MspI | CCGG | 6 cut(s) | 123, 230, 306, 490, 496, 581 |
| MspR9I | CCNGG | 2 cut(s) | 491, 496 |
| MvnI | CGCG | 3 cut(s) | 263, 294, 656 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 13, 111, 194, 680 |
| NaeI | GCCGGC | 1 cut(s) | 307 |
| NciI | CCSGG | 2 cut(s) | 491, 496 |
| NdeII | GATC | 2 cut(s) | 85, 577 |
| NgoMIV | GCCGGC | 1 cut(s) | 305 |
| NlaIII | CATG | 4 cut(s) | 270, 401, 410, 689 |
| NlaIV | GGNNCC | 4 cut(s) | 106, 494, 579, 612 |
| NruI | TCGCGA | 1 cut(s) | 656 |
| NspI | RCATGY | 1 cut(s) | 410 |
| PaeR7I | CTCGAG | 1 cut(s) | 57 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 134 |
| PdiI | GCCGGC | 1 cut(s) | 307 |
| PfeI | GAWTC | 1 cut(s) | 147 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 468 |
| PinAI | ACCGGT | 1 cut(s) | 229 |
| PkrI | GCNGC | 6 cut(s) | 175, 199, 259, 262, 384, 553 |
| PleI | GAGTC | 1 cut(s) | 365 |
| PpsI | GAGTC | 1 cut(s) | 365 |
| Ppu21I | YACGTR | 2 cut(s) | 138, 666 |
| PspN4I | GGNNCC | 4 cut(s) | 106, 494, 579, 612 |
| PspOMI | GGGCCC | 1 cut(s) | 492 |
| PspPI | GGNCC | 2 cut(s) | 492, 493 |
| PsuI | RGATCY | 1 cut(s) | 577 |
| RruI | TCGCGA | 1 cut(s) | 656 |
| RsaI | GTAC | 2 cut(s) | 136, 140 |
| RsaNI | GTAC | 2 cut(s) | 135, 139 |
| SatI | GCNGC | 6 cut(s) | 174, 198, 258, 261, 383, 552 |
| Sau3AI | GATC | 2 cut(s) | 85, 577 |
| Sau96I | GGNCC | 2 cut(s) | 492, 493 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 2 cut(s) | 491, 496 |
| SduI | GDGCHC | 1 cut(s) | 496 |
| SfaNI | GCATC | 1 cut(s) | 661 |
| Sfr274I | CTCGAG | 1 cut(s) | 57 |
| SlaI | CTCGAG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 2 cut(s) | 57, 623 |
| SmoI | CTYRAG | 2 cut(s) | 57, 623 |
| SnaBI | TACGTA | 2 cut(s) | 138, 666 |
| Sse9I | AATT | 1 cut(s) | 690 |
| SsiI | CCGC | 6 cut(s) | 174, 186, 195, 258, 261, 327 |
| StyD4I | CCNGG | 2 cut(s) | 489, 494 |
| StyI | CCWWGG | 2 cut(s) | 100, 109 |
| TaiI | ACGT | 3 cut(s) | 140, 662, 668 |
| TaqI | TCGA | 2 cut(s) | 58, 504 |
| TasI | AATT | 1 cut(s) | 690 |
| TauI | GCSGC | 3 cut(s) | 176, 260, 263 |
| TfiI | GAWTC | 1 cut(s) | 147 |
| TseI | GCWGC | 3 cut(s) | 197, 382, 551 |
| TspDTI | ATGAA | 2 cut(s) | 573, 702 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 468 |
| XapI | RAATTY | 1 cut(s) | 690 |
| XceI | RCATGY | 1 cut(s) | 410 |
| XhoI | CTCGAG | 1 cut(s) | 57 |
| XmiI | GTMKAC | 1 cut(s) | 662 |