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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AccII | CGCG | 2 cut(s) | 329, 386 |
| AciI | CCGC | 2 cut(s) | 125, 384 |
| AcsI | RAATTY | 2 cut(s) | 273, 323 |
| AcuI | CTGAAG | 1 cut(s) | 281 |
| AfaI | GTAC | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 308, 340 |
| AleI | CACNNNNGTG | 1 cut(s) | 32 |
| AluBI | AGCT | 4 cut(s) | 42, 135, 268, 295 |
| AluI | AGCT | 4 cut(s) | 42, 135, 268, 295 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| AoxI | GGCC | 2 cut(s) | 126, 306 |
| ApeKI | GCWGC | 2 cut(s) | 224, 265 |
| ApoI | RAATTY | 2 cut(s) | 273, 323 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspLEI | GCGC | 1 cut(s) | 358 |
| AspS9I | GGNCC | 2 cut(s) | 127, 410 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| AsuII | TTCGAA | 1 cut(s) | 45 |
| AvaII | GGWCC | 1 cut(s) | 410 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 84, 117 |
| BbvI | GCAGC | 2 cut(s) | 211, 277 |
| BccI | CCATC | 3 cut(s) | 174, 298, 385 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 353 |
| BisI | GCNGC | 3 cut(s) | 126, 225, 266 |
| BlsI | GCNGC | 3 cut(s) | 127, 226, 267 |
| Bme18I | GGWCC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 410 |
| BmiI | GGNNCC | 1 cut(s) | 285 |
| BmsI | GCATC | 2 cut(s) | 92, 334 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 365, 397 |
| Bpu10I | CCTNAGC | 1 cut(s) | 131 |
| Bpu14I | TTCGAA | 1 cut(s) | 45 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaAI | YACGTR | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| BsaWI | WCCGGW | 1 cut(s) | 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse118I | RCCGGY | 1 cut(s) | 142 |
| Bse1I | ACTGG | 1 cut(s) | 7 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 4 cut(s) | 83, 112, 199, 376 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMII | CTCAG | 2 cut(s) | 70, 122 |
| BseNI | ACTGG | 1 cut(s) | 7 |
| BseRI | GAGGAG | 2 cut(s) | 44, 224 |
| BseXI | GCAGC | 2 cut(s) | 211, 277 |
| Bsh1236I | CGCG | 2 cut(s) | 329, 386 |
| BshFI | GGCC | 2 cut(s) | 128, 308 |
| BsiSI | CCGG | 2 cut(s) | 143, 240 |
| BslFI | GGGAC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 1 cut(s) | 106 |
| BsmI | GAATGC | 1 cut(s) | 85 |
| BsnI | GGCC | 2 cut(s) | 128, 308 |
| Bsp119I | TTCGAA | 1 cut(s) | 45 |
| Bsp143I | GATC | 2 cut(s) | 3, 378 |
| Bsp68I | TCGCGA | 1 cut(s) | 329 |
| BspACI | CCGC | 2 cut(s) | 125, 384 |
| BspANI | GGCC | 2 cut(s) | 128, 308 |
| BspCNI | CTCAG | 2 cut(s) | 69, 123 |
| BspFNI | CGCG | 2 cut(s) | 329, 386 |
| BspLI | GGNNCC | 1 cut(s) | 285 |
| BspT104I | TTCGAA | 1 cut(s) | 45 |
| BsrFI | RCCGGY | 1 cut(s) | 142 |
| BsrI | ACTGG | 1 cut(s) | 7 |
| BssAI | RCCGGY | 1 cut(s) | 142 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 2 cut(s) | 3, 378 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 176 |
| Bst6I | CTCTTC | 1 cut(s) | 201 |
| BstBAI | YACGTR | 1 cut(s) | 100 |
| BstBI | TTCGAA | 1 cut(s) | 45 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 56, 131 |
| BstF5I | GGATG | 4 cut(s) | 83, 112, 199, 376 |
| BstFNI | CGCG | 2 cut(s) | 329, 386 |
| BstHHI | GCGC | 1 cut(s) | 358 |
| BstKTI | GATC | 2 cut(s) | 6, 381 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMBI | GATC | 2 cut(s) | 3, 378 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 353 |
| BstSNI | TACGTA | 1 cut(s) | 100 |
| BstUI | CGCG | 2 cut(s) | 329, 386 |
| BstV1I | GCAGC | 2 cut(s) | 211, 277 |
| BsuRI | GGCC | 2 cut(s) | 128, 308 |
| BtsCI | GGATG | 4 cut(s) | 83, 112, 199, 376 |
| BtsIMutI | CAGTG | 1 cut(s) | 181 |
| BtuMI | TCGCGA | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CfoI | GCGC | 1 cut(s) | 358 |
| Cfr10I | RCCGGY | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 410 |
| CseI | GACGC | 1 cut(s) | 77 |
| Csp6I | GTAC | 1 cut(s) | 101 |
| CviAII | CATG | 1 cut(s) | 359 |
| CviJI | RGCY | 9 cut(s) | 42, 128, 135, 142, 146, 257, 268, 295, 308 |
| CviKI_1 | RGCY | 9 cut(s) | 42, 128, 135, 142, 146, 257, 268, 295, 308 |
| CviQI | GTAC | 1 cut(s) | 101 |
| DdeI | CTNAG | 2 cut(s) | 56, 131 |
| DpnI | GATC | 2 cut(s) | 5, 380 |
| DpnII | GATC | 2 cut(s) | 3, 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 201 |
| EarI | CTCTTC | 1 cut(s) | 201 |
| Eco105I | TACGTA | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco32I | GATATC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 1 cut(s) | 281 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRV | GATATC | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| EcoT22I | ATGCAT | 1 cut(s) | 85 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| FaeI | CATG | 1 cut(s) | 362 |
| FaiI | YATR | 7 cut(s) | 97, 153, 334, 336, 340, 342, 360 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 389, 421 |
| FaqI | GGGAC | 1 cut(s) | 106 |
| FatI | CATG | 1 cut(s) | 358 |
| FauNDI | CATATG | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 3 cut(s) | 126, 225, 266 |
| FokI | GGATG | 4 cut(s) | 70, 99, 206, 383 |
| Fsp4HI | GCNGC | 3 cut(s) | 126, 225, 266 |
| GlaI | GCGC | 1 cut(s) | 357 |
| GluI | GCNGC | 3 cut(s) | 126, 225, 266 |
| HaeIII | GGCC | 2 cut(s) | 128, 308 |
| HapII | CCGG | 2 cut(s) | 143, 240 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 1 cut(s) | 358 |
| Hin1II | CATG | 1 cut(s) | 362 |
| Hin6I | GCGC | 1 cut(s) | 356 |
| HinP1I | GCGC | 1 cut(s) | 356 |
| HinfI | GANTC | 1 cut(s) | 250 |
| HpaII | CCGG | 2 cut(s) | 143, 240 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 1 cut(s) | 59 |
| Hpy188III | TCNNGA | 3 cut(s) | 87, 191, 328 |
| HpyAV | CCTTC | 1 cut(s) | 319 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 176 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 1 cut(s) | 83 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 353 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 131 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Hsp92II | CATG | 1 cut(s) | 362 |
| HspAI | GCGC | 1 cut(s) | 356 |
| KroI | GCCGGC | 1 cut(s) | 142 |
| KroNI | GCCGGC | 1 cut(s) | 144 |
| Kzo9I | GATC | 2 cut(s) | 3, 378 |
| Lsp1109I | GCAGC | 2 cut(s) | 211, 277 |
| LweI | GCATC | 2 cut(s) | 92, 334 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MalI | GATC | 2 cut(s) | 5, 380 |
| MboI | GATC | 2 cut(s) | 3, 378 |
| MboII | GAAGA | 6 cut(s) | 88, 191, 215, 218, 259, 400 |
| MluCI | AATT | 3 cut(s) | 233, 273, 323 |
| MnlI | CCTC | 5 cut(s) | 25, 65, 83, 202, 429 |
| Mph1103I | ATGCAT | 1 cut(s) | 85 |
| MroNI | GCCGGC | 1 cut(s) | 142 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 236 |
| MslI | CAYNNNNRTG | 2 cut(s) | 32, 174 |
| MspA1I | CMGCKG | 1 cut(s) | 268 |
| MspI | CCGG | 2 cut(s) | 143, 240 |
| Mva1269I | GAATGC | 1 cut(s) | 85 |
| MvnI | CGCG | 2 cut(s) | 329, 386 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 353 |
| NaeI | GCCGGC | 1 cut(s) | 144 |
| NdeI | CATATG | 1 cut(s) | 340 |
| NdeII | GATC | 2 cut(s) | 3, 378 |
| NgoMIV | GCCGGC | 1 cut(s) | 142 |
| NlaIII | CATG | 1 cut(s) | 362 |
| NlaIV | GGNNCC | 1 cut(s) | 285 |
| NruI | TCGCGA | 1 cut(s) | 329 |
| NsiI | ATGCAT | 1 cut(s) | 85 |
| NspV | TTCGAA | 1 cut(s) | 45 |
| OliI | CACNNNNGTG | 1 cut(s) | 32 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 85 |
| PdiI | GCCGGC | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 1 cut(s) | 250 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 3 cut(s) | 127, 226, 267 |
| Ppu21I | YACGTR | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 1 cut(s) | 285 |
| PspPI | GGNCC | 2 cut(s) | 127, 410 |
| PvuII | CAGCTG | 1 cut(s) | 268 |
| RruI | TCGCGA | 1 cut(s) | 329 |
| RsaI | GTAC | 1 cut(s) | 102 |
| RsaNI | GTAC | 1 cut(s) | 101 |
| RseI | CAYNNNNRTG | 2 cut(s) | 32, 174 |
| SaqAI | TTAA | 1 cut(s) | 236 |
| SatI | GCNGC | 3 cut(s) | 126, 225, 266 |
| Sau3AI | GATC | 2 cut(s) | 3, 378 |
| Sau96I | GGNCC | 2 cut(s) | 127, 410 |
| SfaNI | GCATC | 2 cut(s) | 92, 334 |
| SfuI | TTCGAA | 1 cut(s) | 45 |
| SinI | GGWCC | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 32, 174 |
| SmlI | CTYRAG | 1 cut(s) | 296 |
| SmoI | CTYRAG | 1 cut(s) | 296 |
| SnaBI | TACGTA | 1 cut(s) | 100 |
| Sse9I | AATT | 3 cut(s) | 233, 273, 323 |
| SsiI | CCGC | 2 cut(s) | 125, 384 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 2 cut(s) | 121, 176 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TaqI | TCGA | 3 cut(s) | 45, 302, 421 |
| TaqII | GACCGA | 1 cut(s) | 416 |
| TasI | AATT | 3 cut(s) | 233, 273, 323 |
| TauI | GCSGC | 1 cut(s) | 128 |
| TfiI | GAWTC | 1 cut(s) | 250 |
| Tru1I | TTAA | 1 cut(s) | 236 |
| Tru9I | TTAA | 1 cut(s) | 236 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TseI | GCWGC | 2 cut(s) | 224, 265 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| TspRI | CASTG | 1 cut(s) | 181 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| VpaK11BI | GGWCC | 1 cut(s) | 410 |
| XapI | RAATTY | 2 cut(s) | 273, 323 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |
| Zsp2I | ATGCAT | 1 cut(s) | 85 |