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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 398, 431 |
| AccII | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| AciI | CCGC | 6 cut(s) | 243, 426, 596, 726, 767, 949 |
| AclWI | GGATC | 4 cut(s) | 282, 381, 533, 546 |
| AcoI | YGGCCR | 1 cut(s) | 565 |
| AfaI | GTAC | 4 cut(s) | 519, 590, 803, 962 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 937 |
| AgsI | TTSAA | 2 cut(s) | 502, 723 |
| AjnI | CCWGG | 2 cut(s) | 63, 233 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 4 cut(s) | 259, 530, 644, 893 |
| AluI | AGCT | 4 cut(s) | 259, 530, 644, 893 |
| AlwI | GGATC | 4 cut(s) | 282, 381, 533, 546 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 647 |
| AoxI | GGCC | 2 cut(s) | 66, 565 |
| ApeKI | GCWGC | 2 cut(s) | 155, 699 |
| AspLEI | GCGC | 3 cut(s) | 179, 609, 767 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuC2I | CCSGG | 1 cut(s) | 843 |
| AsuNHI | GCTAGC | 1 cut(s) | 362 |
| AvaII | GGWCC | 1 cut(s) | 11 |
| BalI | TGGCCA | 1 cut(s) | 567 |
| BamHI | GGATCC | 1 cut(s) | 538 |
| BanII | GRGCYC | 1 cut(s) | 861 |
| BbsI | GAAGAC | 2 cut(s) | 437, 620 |
| BbvCI | CCTCAGC | 1 cut(s) | 640 |
| BbvI | GCAGC | 2 cut(s) | 167, 711 |
| BccI | CCATC | 3 cut(s) | 213, 449, 580 |
| BceAI | ACGGC | 1 cut(s) | 335 |
| BciT130I | CCWGG | 2 cut(s) | 65, 235 |
| BciVI | GTATCC | 1 cut(s) | 295 |
| BcnI | CCSGG | 1 cut(s) | 843 |
| BfaI | CTAG | 3 cut(s) | 363, 467, 533 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfuAI | ACCTGC | 2 cut(s) | 398, 431 |
| BfuI | GTATCC | 1 cut(s) | 295 |
| BisI | GCNGC | 3 cut(s) | 156, 596, 700 |
| BlsI | GCNGC | 3 cut(s) | 157, 597, 701 |
| BmcAI | AGTACT | 1 cut(s) | 519 |
| Bme1390I | CCNGG | 3 cut(s) | 65, 235, 843 |
| Bme18I | GGWCC | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmiI | GGNNCC | 1 cut(s) | 540 |
| BmrFI | CCNGG | 3 cut(s) | 65, 235, 843 |
| BmtI | GCTAGC | 1 cut(s) | 366 |
| BpiI | GAAGAC | 2 cut(s) | 437, 620 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 11, 43 |
| BpmI | CTGGAG | 1 cut(s) | 914 |
| Bpu10I | CCTNAGC | 1 cut(s) | 640 |
| BpuMI | CCSGG | 1 cut(s) | 843 |
| BsaAI | YACGTR | 1 cut(s) | 592 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 3 cut(s) | 234, 474, 553 |
| BsaWI | WCCGGW | 2 cut(s) | 13, 575 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 937 |
| Bse1I | ACTGG | 4 cut(s) | 276, 690, 785, 917 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseBI | CCWGG | 2 cut(s) | 65, 235 |
| BseDI | CCNNGG | 3 cut(s) | 234, 474, 553 |
| BseGI | GGATG | 3 cut(s) | 22, 460, 572 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 937 |
| BseMII | CTCAG | 2 cut(s) | 30, 654 |
| BseNI | ACTGG | 4 cut(s) | 276, 690, 785, 917 |
| BseXI | GCAGC | 2 cut(s) | 167, 711 |
| Bsh1236I | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| Bsh1285I | CGRYCG | 1 cut(s) | 33 |
| BshFI | GGCC | 2 cut(s) | 68, 567 |
| BsiEI | CGRYCG | 1 cut(s) | 33 |
| BsiSI | CCGG | 3 cut(s) | 14, 576, 842 |
| BslFI | GGGAC | 2 cut(s) | 784, 829 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 937 |
| BsmFI | GGGAC | 2 cut(s) | 784, 829 |
| BsnI | GGCC | 2 cut(s) | 68, 567 |
| Bsp1286I | GDGCHC | 1 cut(s) | 861 |
| Bsp143I | GATC | 4 cut(s) | 274, 373, 538, 879 |
| BspACI | CCGC | 6 cut(s) | 243, 426, 596, 726, 767, 949 |
| BspANI | GGCC | 2 cut(s) | 68, 567 |
| BspCNI | CTCAG | 2 cut(s) | 31, 653 |
| BspFNI | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| BspLI | GGNNCC | 1 cut(s) | 540 |
| BspMI | ACCTGC | 2 cut(s) | 398, 431 |
| BspOI | GCTAGC | 1 cut(s) | 366 |
| BspPI | GGATC | 4 cut(s) | 282, 381, 533, 546 |
| BsrI | ACTGG | 4 cut(s) | 276, 690, 785, 917 |
| BssECI | CCNNGG | 3 cut(s) | 234, 474, 553 |
| BssMI | GATC | 4 cut(s) | 274, 373, 538, 879 |
| BssT1I | CCWWGG | 1 cut(s) | 553 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 235 |
| Bst4CI | ACNGT | 5 cut(s) | 34, 94, 103, 649, 663 |
| BstBAI | YACGTR | 1 cut(s) | 592 |
| BstC8I | GCNNGC | 4 cut(s) | 70, 74, 364, 368 |
| BstDEI | CTNAG | 2 cut(s) | 39, 640 |
| BstF5I | GGATG | 3 cut(s) | 22, 460, 572 |
| BstFNI | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| BstHHI | GCGC | 3 cut(s) | 179, 609, 767 |
| BstKTI | GATC | 4 cut(s) | 277, 376, 541, 882 |
| BstMBI | GATC | 4 cut(s) | 274, 373, 538, 879 |
| BstMCI | CGRYCG | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 134, 230, 341, 376, 467, 564, 604 |
| BstNI | CCWGG | 2 cut(s) | 65, 235 |
| BstSCI | CCNGG | 3 cut(s) | 63, 233, 841 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstUI | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| BstV1I | GCAGC | 2 cut(s) | 167, 711 |
| BstV2I | GAAGAC | 2 cut(s) | 437, 620 |
| BstX2I | RGATCY | 1 cut(s) | 538 |
| BstYI | RGATCY | 1 cut(s) | 538 |
| BsuI | GTATCC | 1 cut(s) | 295 |
| BsuRI | GGCC | 2 cut(s) | 68, 567 |
| BtgZI | GCGATG | 1 cut(s) | 191 |
| BtsCI | GGATG | 3 cut(s) | 22, 460, 572 |
| BtsIMutI | CAGTG | 5 cut(s) | 90, 99, 683, 700, 924 |
| BveI | ACCTGC | 2 cut(s) | 398, 431 |
| Cac8I | GCNNGC | 4 cut(s) | 70, 74, 364, 368 |
| CaiI | CAGNNNCTG | 1 cut(s) | 647 |
| CfoI | GCGC | 3 cut(s) | 179, 609, 767 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| CseI | GACGC | 3 cut(s) | 40, 368, 417 |
| Csp6I | GTAC | 4 cut(s) | 518, 589, 802, 961 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 459, 494 |
| CviAII | CATG | 1 cut(s) | 187 |
| CviQI | GTAC | 4 cut(s) | 518, 589, 802, 961 |
| DdeI | CTNAG | 2 cut(s) | 39, 640 |
| DpnI | GATC | 4 cut(s) | 276, 375, 540, 881 |
| DpnII | GATC | 4 cut(s) | 274, 373, 538, 879 |
| EaeI | YGGCCR | 1 cut(s) | 565 |
| Eco130I | CCWWGG | 1 cut(s) | 553 |
| Eco24I | GRGCYC | 1 cut(s) | 861 |
| Eco47I | GGWCC | 1 cut(s) | 11 |
| EcoRII | CCWGG | 2 cut(s) | 63, 233 |
| EcoT14I | CCWWGG | 1 cut(s) | 553 |
| EcoT38I | GRGCYC | 1 cut(s) | 861 |
| ErhI | CCWWGG | 1 cut(s) | 553 |
| FaeI | CATG | 1 cut(s) | 190 |
| FaiI | YATR | 8 cut(s) | 188, 284, 294, 404, 414, 437, 485, 855 |
| FaqI | GGGAC | 2 cut(s) | 784, 829 |
| FatI | CATG | 1 cut(s) | 186 |
| FauI | CCCGC | 2 cut(s) | 760, 956 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 596, 700 |
| FokI | GGATG | 3 cut(s) | 29, 467, 559 |
| FriOI | GRGCYC | 1 cut(s) | 861 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 596, 700 |
| FspBI | CTAG | 3 cut(s) | 363, 467, 533 |
| GlaI | GCGC | 3 cut(s) | 178, 608, 766 |
| GluI | GCNGC | 3 cut(s) | 156, 596, 700 |
| GsuI | CTGGAG | 1 cut(s) | 914 |
| HaeIII | GGCC | 2 cut(s) | 68, 567 |
| HapII | CCGG | 3 cut(s) | 14, 576, 842 |
| HgaI | GACGC | 3 cut(s) | 40, 368, 417 |
| HhaI | GCGC | 3 cut(s) | 179, 609, 767 |
| Hin1II | CATG | 1 cut(s) | 190 |
| Hin6I | GCGC | 3 cut(s) | 177, 607, 765 |
| HinP1I | GCGC | 3 cut(s) | 177, 607, 765 |
| HincII | GTYRAC | 2 cut(s) | 61, 97 |
| HindII | GTYRAC | 2 cut(s) | 61, 97 |
| HinfI | GANTC | 3 cut(s) | 22, 286, 502 |
| HpaI | GTTAAC | 1 cut(s) | 61 |
| HpaII | CCGG | 3 cut(s) | 14, 576, 842 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 97 |
| Hpy188I | TCNGA | 5 cut(s) | 48, 253, 328, 433, 781 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 199, 833, 883 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 97 |
| Hpy99I | CGWCG | 3 cut(s) | 433, 667, 815 |
| HpyAV | CCTTC | 4 cut(s) | 113, 172, 214, 334 |
| HpyCH4III | ACNGT | 5 cut(s) | 34, 94, 103, 649, 663 |
| HpyCH4IV | ACGT | 1 cut(s) | 591 |
| HpyCH4V | TGCA | 3 cut(s) | 137, 320, 487 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 134, 230, 341, 376, 467, 564, 604 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 640 |
| HpySE526I | ACGT | 1 cut(s) | 591 |
| Hsp92II | CATG | 1 cut(s) | 190 |
| HspAI | GCGC | 3 cut(s) | 177, 607, 765 |
| KspAI | GTTAAC | 1 cut(s) | 61 |
| Kzo9I | GATC | 4 cut(s) | 274, 373, 538, 879 |
| Lsp1109I | GCAGC | 2 cut(s) | 167, 711 |
| MaeI | CTAG | 3 cut(s) | 363, 467, 533 |
| MaeII | ACGT | 1 cut(s) | 591 |
| MaeIII | GTNAC | 3 cut(s) | 34, 787, 922 |
| MalI | GATC | 4 cut(s) | 276, 375, 540, 881 |
| MboI | GATC | 4 cut(s) | 274, 373, 538, 879 |
| MboII | GAAGA | 7 cut(s) | 226, 437, 625, 627, 679, 711, 917 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 1 cut(s) | 538 |
| MhlI | GDGCHC | 1 cut(s) | 861 |
| MlsI | TGGCCA | 1 cut(s) | 567 |
| MluCI | AATT | 4 cut(s) | 6, 390, 497, 909 |
| MluNI | TGGCCA | 1 cut(s) | 567 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MmeI | TCCRAC | 2 cut(s) | 94, 411 |
| MnlI | CCTC | 8 cut(s) | 34, 118, 160, 292, 391, 469, 649, 766 |
| Mox20I | TGGCCA | 1 cut(s) | 567 |
| MscI | TGGCCA | 1 cut(s) | 567 |
| MseI | TTAA | 1 cut(s) | 60 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| Msp20I | TGGCCA | 1 cut(s) | 567 |
| MspI | CCGG | 3 cut(s) | 14, 576, 842 |
| MspR9I | CCNGG | 3 cut(s) | 65, 235, 843 |
| MunI | CAATTG | 1 cut(s) | 6 |
| MvaI | CCWGG | 2 cut(s) | 65, 235 |
| MvnI | CGCG | 6 cut(s) | 179, 267, 428, 609, 767, 951 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 134, 230, 341, 376, 467, 564, 604 |
| NciI | CCSGG | 1 cut(s) | 843 |
| NdeII | GATC | 4 cut(s) | 274, 373, 538, 879 |
| NheI | GCTAGC | 1 cut(s) | 362 |
| NlaIII | CATG | 1 cut(s) | 190 |
| NlaIV | GGNNCC | 1 cut(s) | 540 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 801, 867 |
| PfeI | GAWTC | 2 cut(s) | 22, 502 |
| PflFI | GACNNNGTC | 2 cut(s) | 427, 775 |
| PkrI | GCNGC | 3 cut(s) | 157, 597, 701 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| Ppu21I | YACGTR | 1 cut(s) | 592 |
| Psp6I | CCWGG | 2 cut(s) | 63, 233 |
| PspGI | CCWGG | 2 cut(s) | 63, 233 |
| PspN4I | GGNNCC | 1 cut(s) | 540 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| PstNI | CAGNNNCTG | 1 cut(s) | 647 |
| PsuI | RGATCY | 1 cut(s) | 538 |
| PsyI | GACNNNGTC | 2 cut(s) | 427, 775 |
| RsaI | GTAC | 4 cut(s) | 519, 590, 803, 962 |
| RsaNI | GTAC | 4 cut(s) | 518, 589, 802, 961 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SaqAI | TTAA | 1 cut(s) | 60 |
| SatI | GCNGC | 3 cut(s) | 156, 596, 700 |
| Sau3AI | GATC | 4 cut(s) | 274, 373, 538, 879 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| ScaI | AGTACT | 1 cut(s) | 519 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 3 cut(s) | 65, 235, 843 |
| SduI | GDGCHC | 1 cut(s) | 861 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| SinI | GGWCC | 1 cut(s) | 11 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| Sse9I | AATT | 4 cut(s) | 6, 390, 497, 909 |
| SsiI | CCGC | 6 cut(s) | 243, 426, 596, 726, 767, 949 |
| SspMI | CTAG | 3 cut(s) | 363, 467, 533 |
| StyD4I | CCNGG | 3 cut(s) | 63, 233, 841 |
| StyI | CCWWGG | 1 cut(s) | 553 |
| TaaI | ACNGT | 5 cut(s) | 34, 94, 103, 649, 663 |
| TaiI | ACGT | 1 cut(s) | 594 |
| TaqI | TCGA | 6 cut(s) | 29, 165, 198, 289, 665, 861 |
| TaqII | GACCGA | 1 cut(s) | 884 |
| TasI | AATT | 4 cut(s) | 6, 390, 497, 909 |
| TatI | WGTACW | 1 cut(s) | 517 |
| TauI | GCSGC | 1 cut(s) | 598 |
| TfiI | GAWTC | 2 cut(s) | 22, 502 |
| Tru1I | TTAA | 1 cut(s) | 60 |
| Tru9I | TTAA | 1 cut(s) | 60 |
| TscAI | CASTG | 5 cut(s) | 97, 106, 690, 700, 924 |
| TseI | GCWGC | 2 cut(s) | 155, 699 |
| TspDTI | ATGAA | 1 cut(s) | 233 |
| TspRI | CASTG | 5 cut(s) | 97, 106, 690, 700, 924 |
| Tth111I | GACNNNGTC | 2 cut(s) | 427, 775 |
| VpaK11BI | GGWCC | 1 cut(s) | 11 |
| XspI | CTAG | 3 cut(s) | 363, 467, 533 |
| ZrmI | AGTACT | 1 cut(s) | 519 |