Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 649 |
| AccI | GTMKAC | 3 cut(s) | 48, 83, 693 |
| AccII | CGCG | 1 cut(s) | 551 |
| AciI | CCGC | 5 cut(s) | 176, 347, 446, 680, 683 |
| AcsI | RAATTY | 1 cut(s) | 495 |
| AcuI | CTGAAG | 3 cut(s) | 63, 92, 420 |
| AfaI | GTAC | 2 cut(s) | 320, 340 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 631 |
| AgsI | TTSAA | 2 cut(s) | 119, 484 |
| AhlI | ACTAGT | 1 cut(s) | 688 |
| AjnI | CCWGG | 1 cut(s) | 411 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 530, 562 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 29 |
| AluBI | AGCT | 5 cut(s) | 56, 114, 136, 490, 517 |
| AluI | AGCT | 5 cut(s) | 56, 114, 136, 490, 517 |
| Alw26I | GTCTC | 1 cut(s) | 14 |
| Ama87I | CYCGRG | 1 cut(s) | 152 |
| AoxI | GGCC | 5 cut(s) | 72, 348, 447, 528, 576 |
| ApeKI | GCWGC | 3 cut(s) | 211, 219, 605 |
| ApoI | RAATTY | 1 cut(s) | 495 |
| AspS9I | GGNCC | 4 cut(s) | 73, 349, 409, 577 |
| AsuC2I | CCSGG | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 1 cut(s) | 526 |
| AvaI | CYCGRG | 1 cut(s) | 152 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| BanII | GRGCYC | 1 cut(s) | 510 |
| BbvI | GCAGC | 3 cut(s) | 223, 231, 592 |
| BccI | CCATC | 3 cut(s) | 229, 396, 484 |
| BciT130I | CCWGG | 1 cut(s) | 413 |
| BcnI | CCSGG | 1 cut(s) | 463 |
| BcoDI | GTCTC | 1 cut(s) | 14 |
| BcuI | ACTAGT | 1 cut(s) | 688 |
| BfaI | CTAG | 4 cut(s) | 53, 309, 326, 689 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BfuAI | ACCTGC | 1 cut(s) | 649 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 575 |
| BisI | GCNGC | 7 cut(s) | 212, 220, 348, 447, 606, 681, 684 |
| BlsI | GCNGC | 7 cut(s) | 213, 221, 349, 448, 607, 682, 685 |
| Bme1390I | CCNGG | 2 cut(s) | 413, 463 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmeT110I | CYCGRG | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 4 cut(s) | 73, 349, 409, 577 |
| BmiI | GGNNCC | 3 cut(s) | 192, 507, 669 |
| BmrFI | CCNGG | 2 cut(s) | 413, 463 |
| BmrI | ACTGGG | 1 cut(s) | 189 |
| BmsI | GCATC | 4 cut(s) | 280, 280, 556, 603 |
| BmuI | ACTGGG | 1 cut(s) | 189 |
| BpmI | CTGGAG | 1 cut(s) | 654 |
| BpuMI | CCSGG | 1 cut(s) | 463 |
| BsaAI | YACGTR | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 1 cut(s) | 501 |
| BsaWI | WCCGGW | 1 cut(s) | 541 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 631 |
| Bse118I | RCCGGY | 1 cut(s) | 364 |
| Bse1I | ACTGG | 2 cut(s) | 195, 671 |
| BseBI | CCWGG | 1 cut(s) | 413 |
| BseDI | CCNNGG | 1 cut(s) | 501 |
| BseGI | GGATG | 3 cut(s) | 144, 421, 476 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 631 |
| BseNI | ACTGG | 2 cut(s) | 195, 671 |
| BseRI | GAGGAG | 2 cut(s) | 266, 446 |
| BseXI | GCAGC | 3 cut(s) | 223, 231, 592 |
| BseYI | CCCAGC | 1 cut(s) | 75 |
| Bsh1236I | CGCG | 1 cut(s) | 551 |
| BshFI | GGCC | 5 cut(s) | 74, 350, 449, 530, 578 |
| BsiHKCI | CYCGRG | 1 cut(s) | 152 |
| BsiSI | CCGG | 3 cut(s) | 365, 462, 542 |
| BsiWI | CGTACG | 1 cut(s) | 318 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 631 |
| BsmAI | GTCTC | 1 cut(s) | 14 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BsnI | GGCC | 5 cut(s) | 74, 350, 449, 530, 578 |
| BsoBI | CYCGRG | 1 cut(s) | 152 |
| Bsp1286I | GDGCHC | 1 cut(s) | 510 |
| Bsp143I | GATC | 1 cut(s) | 600 |
| Bsp68I | TCGCGA | 1 cut(s) | 551 |
| BspACI | CCGC | 5 cut(s) | 176, 347, 446, 680, 683 |
| BspANI | GGCC | 5 cut(s) | 74, 350, 449, 530, 578 |
| BspFNI | CGCG | 1 cut(s) | 551 |
| BspLI | GGNNCC | 3 cut(s) | 192, 507, 669 |
| BspMI | ACCTGC | 1 cut(s) | 649 |
| BspQI | GCTCTTC | 1 cut(s) | 17 |
| BsrFI | RCCGGY | 1 cut(s) | 364 |
| BsrI | ACTGG | 2 cut(s) | 195, 671 |
| BssAI | RCCGGY | 1 cut(s) | 364 |
| BssECI | CCNNGG | 1 cut(s) | 501 |
| BssMI | GATC | 1 cut(s) | 600 |
| BssT1I | CCWWGG | 1 cut(s) | 501 |
| Bst2UI | CCWGG | 1 cut(s) | 413 |
| Bst4CI | ACNGT | 2 cut(s) | 97, 343 |
| Bst6I | CTCTTC | 2 cut(s) | 17, 417 |
| BstBAI | YACGTR | 1 cut(s) | 322 |
| BstDEI | CTNAG | 1 cut(s) | 353 |
| BstF5I | GGATG | 3 cut(s) | 144, 421, 476 |
| BstFNI | CGCG | 1 cut(s) | 551 |
| BstKTI | GATC | 1 cut(s) | 603 |
| BstMAI | GTCTC | 1 cut(s) | 14 |
| BstMBI | GATC | 1 cut(s) | 600 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 514, 575 |
| BstNI | CCWGG | 1 cut(s) | 413 |
| BstSCI | CCNGG | 2 cut(s) | 411, 461 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstUI | CGCG | 1 cut(s) | 551 |
| BstV1I | GCAGC | 3 cut(s) | 223, 231, 592 |
| BsuRI | GGCC | 5 cut(s) | 74, 350, 449, 530, 578 |
| BtsCI | GGATG | 3 cut(s) | 144, 421, 476 |
| BtsIMutI | CAGTG | 1 cut(s) | 396 |
| BtuMI | TCGCGA | 1 cut(s) | 551 |
| BveI | ACCTGC | 1 cut(s) | 649 |
| Cfr10I | RCCGGY | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 4 cut(s) | 73, 349, 409, 577 |
| Csp6I | GTAC | 2 cut(s) | 319, 339 |
| CviAII | CATG | 3 cut(s) | 215, 223, 581 |
| CviQI | GTAC | 2 cut(s) | 319, 339 |
| DdeI | CTNAG | 1 cut(s) | 353 |
| DpnI | GATC | 1 cut(s) | 602 |
| DpnII | GATC | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 2 cut(s) | 17, 417 |
| EarI | CTCTTC | 2 cut(s) | 17, 417 |
| Eco130I | CCWWGG | 1 cut(s) | 501 |
| Eco24I | GRGCYC | 1 cut(s) | 510 |
| Eco32I | GATATC | 1 cut(s) | 586 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 3 cut(s) | 63, 92, 420 |
| Eco88I | CYCGRG | 1 cut(s) | 152 |
| EcoRII | CCWGG | 1 cut(s) | 411 |
| EcoRV | GATATC | 1 cut(s) | 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 501 |
| EcoT38I | GRGCYC | 1 cut(s) | 510 |
| ErhI | CCWWGG | 1 cut(s) | 501 |
| FaeI | CATG | 3 cut(s) | 218, 226, 584 |
| FaiI | YATR | 8 cut(s) | 216, 224, 393, 443, 556, 558, 582, 637 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 3 cut(s) | 214, 222, 580 |
| FblI | GTMKAC | 3 cut(s) | 48, 83, 693 |
| Fnu4HI | GCNGC | 7 cut(s) | 212, 220, 348, 447, 606, 681, 684 |
| FokI | GGATG | 3 cut(s) | 131, 428, 463 |
| FriOI | GRGCYC | 1 cut(s) | 510 |
| Fsp4HI | GCNGC | 7 cut(s) | 212, 220, 348, 447, 606, 681, 684 |
| FspBI | CTAG | 4 cut(s) | 53, 309, 326, 689 |
| GluI | GCNGC | 7 cut(s) | 212, 220, 348, 447, 606, 681, 684 |
| GsaI | CCCAGC | 1 cut(s) | 79 |
| GsuI | CTGGAG | 1 cut(s) | 654 |
| HaeIII | GGCC | 5 cut(s) | 74, 350, 449, 530, 578 |
| HapII | CCGG | 3 cut(s) | 365, 462, 542 |
| Hin1II | CATG | 3 cut(s) | 218, 226, 584 |
| HincII | GTYRAC | 3 cut(s) | 200, 459, 694 |
| HindII | GTYRAC | 3 cut(s) | 200, 459, 694 |
| HinfI | GANTC | 4 cut(s) | 89, 226, 472, 628 |
| HpaI | GTTAAC | 1 cut(s) | 459 |
| HpaII | CCGG | 3 cut(s) | 365, 462, 542 |
| HphI | GGTGA | 1 cut(s) | 526 |
| Hpy166II | GTNNAC | 5 cut(s) | 49, 84, 200, 459, 694 |
| Hpy188I | TCNGA | 1 cut(s) | 111 |
| Hpy188III | TCNNGA | 3 cut(s) | 124, 309, 550 |
| Hpy8I | GTNNAC | 5 cut(s) | 49, 84, 200, 459, 694 |
| HpyAV | CCTTC | 3 cut(s) | 116, 151, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 97, 343 |
| HpyCH4IV | ACGT | 2 cut(s) | 317, 321 |
| HpyCH4V | TGCA | 1 cut(s) | 658 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 514, 575 |
| HpyF3I | CTNAG | 1 cut(s) | 353 |
| HpySE526I | ACGT | 2 cut(s) | 317, 321 |
| Hsp92II | CATG | 3 cut(s) | 218, 226, 584 |
| KspAI | GTTAAC | 1 cut(s) | 459 |
| Kzo9I | GATC | 1 cut(s) | 600 |
| LguI | GCTCTTC | 1 cut(s) | 17 |
| LmnI | GCTCC | 2 cut(s) | 505, 673 |
| Lsp1109I | GCAGC | 3 cut(s) | 223, 231, 592 |
| LweI | GCATC | 4 cut(s) | 280, 280, 556, 603 |
| MaeI | CTAG | 4 cut(s) | 53, 309, 326, 689 |
| MaeII | ACGT | 2 cut(s) | 317, 321 |
| MaeIII | GTNAC | 2 cut(s) | 356, 673 |
| MalI | GATC | 1 cut(s) | 602 |
| MboI | GATC | 1 cut(s) | 600 |
| MboII | GAAGA | 5 cut(s) | 4, 310, 413, 434, 622 |
| MhlI | GDGCHC | 1 cut(s) | 510 |
| MluCI | AATT | 1 cut(s) | 495 |
| MnlI | CCTC | 8 cut(s) | 247, 287, 288, 305, 316, 418, 424, 658 |
| MseI | TTAA | 3 cut(s) | 458, 513, 642 |
| MslI | CAYNNNNRTG | 1 cut(s) | 68 |
| MspA1I | CMGCKG | 2 cut(s) | 490, 680 |
| MspI | CCGG | 3 cut(s) | 365, 462, 542 |
| MspR9I | CCNGG | 2 cut(s) | 413, 463 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 413 |
| MvnI | CGCG | 1 cut(s) | 551 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 514, 575 |
| NciI | CCSGG | 1 cut(s) | 463 |
| NdeII | GATC | 1 cut(s) | 600 |
| NlaIII | CATG | 3 cut(s) | 218, 226, 584 |
| NlaIV | GGNNCC | 3 cut(s) | 192, 507, 669 |
| NmuCI | GTSAC | 1 cut(s) | 673 |
| NruI | TCGCGA | 1 cut(s) | 551 |
| PciSI | GCTCTTC | 1 cut(s) | 17 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PfeI | GAWTC | 4 cut(s) | 89, 226, 472, 628 |
| Pfl23II | CGTACG | 1 cut(s) | 318 |
| PfoI | TCCNGGA | 1 cut(s) | 411 |
| PkrI | GCNGC | 7 cut(s) | 213, 221, 349, 448, 607, 682, 685 |
| Ppu21I | YACGTR | 1 cut(s) | 322 |
| Psp6I | CCWGG | 1 cut(s) | 411 |
| PspFI | CCCAGC | 1 cut(s) | 75 |
| PspGI | CCWGG | 1 cut(s) | 411 |
| PspLI | CGTACG | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 3 cut(s) | 192, 507, 669 |
| PspPI | GGNCC | 4 cut(s) | 73, 349, 409, 577 |
| PvuII | CAGCTG | 1 cut(s) | 490 |
| RruI | TCGCGA | 1 cut(s) | 551 |
| RsaI | GTAC | 2 cut(s) | 320, 340 |
| RsaNI | GTAC | 2 cut(s) | 319, 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 68 |
| SalI | GTCGAC | 1 cut(s) | 692 |
| SapI | GCTCTTC | 1 cut(s) | 17 |
| SaqAI | TTAA | 3 cut(s) | 458, 513, 642 |
| SatI | GCNGC | 7 cut(s) | 212, 220, 348, 447, 606, 681, 684 |
| Sau3AI | GATC | 1 cut(s) | 600 |
| Sau96I | GGNCC | 4 cut(s) | 73, 349, 409, 577 |
| ScrFI | CCNGG | 2 cut(s) | 413, 463 |
| SduI | GDGCHC | 1 cut(s) | 510 |
| SfaNI | GCATC | 4 cut(s) | 280, 280, 556, 603 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| SinI | GGWCC | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 68 |
| SpeI | ACTAGT | 1 cut(s) | 688 |
| Sse9I | AATT | 1 cut(s) | 495 |
| SsiI | CCGC | 5 cut(s) | 176, 347, 446, 680, 683 |
| SspMI | CTAG | 4 cut(s) | 53, 309, 326, 689 |
| StyD4I | CCNGG | 2 cut(s) | 411, 461 |
| StyI | CCWWGG | 1 cut(s) | 501 |
| TaaI | ACNGT | 2 cut(s) | 97, 343 |
| TaiI | ACGT | 2 cut(s) | 320, 324 |
| TaqI | TCGA | 3 cut(s) | 233, 267, 693 |
| TasI | AATT | 1 cut(s) | 495 |
| TauI | GCSGC | 4 cut(s) | 350, 449, 683, 686 |
| TfiI | GAWTC | 4 cut(s) | 89, 226, 472, 628 |
| Tru1I | TTAA | 3 cut(s) | 458, 513, 642 |
| Tru9I | TTAA | 3 cut(s) | 458, 513, 642 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TseFI | GTSAC | 1 cut(s) | 673 |
| TseI | GCWGC | 3 cut(s) | 211, 219, 605 |
| Tsp45I | GTSAC | 1 cut(s) | 673 |
| TspDTI | ATGAA | 2 cut(s) | 435, 609 |
| TspGWI | ACGGA | 1 cut(s) | 5 |
| TspRI | CASTG | 1 cut(s) | 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XapI | RAATTY | 1 cut(s) | 495 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XmiI | GTMKAC | 3 cut(s) | 48, 83, 693 |
| XspI | CTAG | 4 cut(s) | 53, 309, 326, 689 |