Rmu_sc0015486.1_g000005

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015486.1
OG0000057
Physical Location & Seq
Reverse (-)
12293 .. 13697
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015486.1_g000005.1.cds

Sequence Viewer

Length: 1077 bp
atgcgtccaaaggaacatatgtgccagggaaccaccgcacagtggcagctcttagatacctacagccaacctatgatccttactatcaccattaaggggaagaggttttccaaggatcagctgaaagggaagaagtactggaaattccacaacttgtggaaccataacacagctgattgtgtgaagctaaaggaccaaattcagatatggcttaataacggcagtttgcaggtagaagcttcgacggccgcggcagcactagtagacttgaaccctttttcggataccggagtcagtatggttgatgtgacctggcccaagaaaaaccagaggaaaccaatccttgatttgactacaaatgggacagaagagagggatgaaggggaggaaacccttgtaaagaagaaagctaagcccatcaacaaagcctcatcattggtcatttgctcgcgatgcaaagaagaatgcagcatccaagcatcacacgcagaagtcgagcaaatatttcgttttggttccctcccgccaatcaaatgggcttcgccatcacgaagctacgagccttctagcccaaaggtgagagttgagaatgagcacaaagatgtcgtgaccaaaccttacattcctcctgcttcaacgtccaccataaaggaaggaaaattatataccagaaagaaggggaaagcagtagagatcagcccttccaagaaaaagaaattgcagcgcaggttcagagaagccaagcgcgccttaaaagctctggatcagggcctgatcaagccgtcgcaactggttaaatctcctgaacaatatcatagggagattgaggcattacctgctaagtcattagtggctcctcgcaattttcaaaaacaggcgcgctcagaatcaggagcctctaatcctagtgttttctgcaggatcatgacagaaaggacacctctgctagctaggaaagacaactcgctaaataggtggccacatgttaggtgcaggttgtttcgagaggaaccagaagccaaaccctcagcttttgagagattggggggcaagggcagcactgcagaagctttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

358

Amino Acids

40.57

Weight (kDa)

9.82

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 220, 717, 844, 984
AccI GTMKAC 1 cut(s) 264
AccII CGCG 4 cut(s) 251, 451, 747, 880
AciI CCGC 4 cut(s) 36, 249, 251, 524
AclWI GGATC 4 cut(s) 70, 123, 771, 929
AcoI YGGCCR 2 cut(s) 246, 977
AcsI RAATTY 2 cut(s) 143, 198
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 3 cut(s) 42, 96, 280
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 3 cut(s) 271, 636, 869
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 2 cut(s) 24, 311
Alw21I GWGCWC 1 cut(s) 597
AlwI GGATC 4 cut(s) 70, 123, 771, 929
AlwNI CAGNNNCTG 1 cut(s) 772
AoxI GGCC 4 cut(s) 246, 314, 769, 977
ApeKI GCWGC 5 cut(s) 46, 254, 468, 721, 1056
ApoI RAATTY 2 cut(s) 143, 198
AspLEI GCGC 5 cut(s) 726, 747, 749, 880, 882
AspS9I GGNCC 3 cut(s) 193, 315, 769
AsuHPI GGTGA 2 cut(s) 79, 589
AsuNHI GCTAGC 1 cut(s) 946
AvaII GGWCC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BalI TGGCCA 1 cut(s) 979
Bbv12I GWGCWC 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 1027
BbvI GCAGC 5 cut(s) 58, 266, 480, 733, 1068
BccI CCATC 2 cut(s) 425, 553
BceAI ACGGC 3 cut(s) 235, 261, 766
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 2 cut(s) 26, 313
BciVI GTATCC 1 cut(s) 277
BclI TGATCA 1 cut(s) 774
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 5 cut(s) 260, 567, 906, 947, 951
BfmI CTRYAG 3 cut(s) 61, 916, 1062
BfuAI ACCTGC 4 cut(s) 220, 717, 844, 984
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 7 cut(s) 47, 249, 252, 255, 469, 722, 1057
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 7 cut(s) 48, 250, 253, 256, 470, 723, 1058
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 26, 313
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 193, 315, 769
BmiI GGNNCC 6 cut(s) 31, 161, 517, 855, 895, 1011
BmrFI CCNGG 2 cut(s) 26, 313
BmsI GCATC 3 cut(s) 443, 480, 488
BmtI GCTAGC 1 cut(s) 950
Bpu10I CCTNAGC 1 cut(s) 1027
Bpu1102I GCTNAGC 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 25, 111, 249
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 96, 280
Bse1I ACTGG 2 cut(s) 143, 795
BseBI CCWGG 2 cut(s) 26, 313
BseDI CCNNGG 3 cut(s) 25, 111, 249
BseGI GGATG 2 cut(s) 382, 471
BseLI CCNNNNNNNGG 3 cut(s) 42, 96, 280
BseMII CTCAG 2 cut(s) 897, 1041
BseNI ACTGG 2 cut(s) 143, 795
BsePI GCGCGC 2 cut(s) 745, 878
BseRI GAGGAG 1 cut(s) 846
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 5 cut(s) 58, 266, 480, 733, 1068
BsgI GTGCAG 1 cut(s) 1012
Bsh1236I CGCG 4 cut(s) 251, 451, 747, 880
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 4 cut(s) 248, 316, 771, 979
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 42, 96, 280
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 4 cut(s) 248, 316, 771, 979
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 6 cut(s) 75, 115, 693, 763, 774, 921
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp68I TCGCGA 1 cut(s) 451
BspACI CCGC 4 cut(s) 36, 249, 251, 524
BspANI GGCC 4 cut(s) 248, 316, 771, 979
BspCNI CTCAG 2 cut(s) 896, 1040
BspFNI CGCG 4 cut(s) 251, 451, 747, 880
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 6 cut(s) 31, 161, 517, 855, 895, 1011
BspMAI CTGCAG 2 cut(s) 920, 1066
BspMI ACCTGC 4 cut(s) 220, 717, 844, 984
BspOI GCTAGC 1 cut(s) 950
BspPI GGATC 4 cut(s) 70, 123, 771, 929
BsrI ACTGG 2 cut(s) 143, 795
BssECI CCNNGG 3 cut(s) 25, 111, 249
BssHII GCGCGC 2 cut(s) 745, 878
BssMI GATC 6 cut(s) 75, 115, 693, 763, 774, 921
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 26, 313
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 2 cut(s) 95, 363
BstAPI GCANNNNNTGC 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 449, 747, 880, 948
BstDEI CTNAG 5 cut(s) 52, 411, 840, 883, 1027
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 382, 471
BstFNI CGCG 4 cut(s) 251, 451, 747, 880
BstHHI GCGC 5 cut(s) 726, 747, 749, 880, 882
BstKTI GATC 6 cut(s) 78, 118, 696, 766, 777, 924
BstMBI GATC 6 cut(s) 75, 115, 693, 763, 774, 921
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 8 cut(s) 245, 254, 453, 485, 746, 755, 836, 1056
BstNI CCWGG 2 cut(s) 26, 313
BstNSI RCATGY 1 cut(s) 986
BstSCI CCNGG 2 cut(s) 24, 311
BstSFI CTRYAG 3 cut(s) 61, 916, 1062
BstUI CGCG 4 cut(s) 251, 451, 747, 880
BstV1I GCAGC 5 cut(s) 58, 266, 480, 733, 1068
BstXI CCANNNNNNTGG 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 246
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 4 cut(s) 248, 316, 771, 979
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 382, 471
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 2 cut(s) 47, 1059
BtuMI TCGCGA 1 cut(s) 451
BveI ACCTGC 4 cut(s) 220, 717, 844, 984
Cac8I GCNNGC 4 cut(s) 449, 747, 880, 948
CaiI CAGNNNCTG 1 cut(s) 772
CciI TCATGA 1 cut(s) 924
CfoI GCGC 5 cut(s) 726, 747, 749, 880, 882
Cfr13I GGNCC 3 cut(s) 193, 315, 769
Cfr42I CCGCGG 1 cut(s) 252
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 925, 983
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 5 cut(s) 52, 411, 840, 883, 1027
DpnI GATC 6 cut(s) 77, 117, 695, 765, 776, 923
DpnII GATC 6 cut(s) 75, 115, 693, 763, 774, 921
EaeI YGGCCR 2 cut(s) 246, 977
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 95, 363
EarI CTCTTC 2 cut(s) 95, 363
EclXI CGGCCG 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 24, 311
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 928, 986
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 924, 982
FauI CCCGC 1 cut(s) 531
FauNDI CATATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 7 cut(s) 47, 249, 252, 255, 469, 722, 1057
FokI GGATG 2 cut(s) 389, 458
Fsp4HI GCNGC 7 cut(s) 47, 249, 252, 255, 469, 722, 1057
FspBI CTAG 5 cut(s) 260, 567, 906, 947, 951
GlaI GCGC 5 cut(s) 725, 746, 748, 879, 881
GluI GCNGC 7 cut(s) 47, 249, 252, 255, 469, 722, 1057
HaeIII GGCC 4 cut(s) 248, 316, 771, 979
HapII CCGG 1 cut(s) 288
HhaI GCGC 5 cut(s) 726, 747, 749, 880, 882
Hin1II CATG 2 cut(s) 928, 986
Hin6I GCGC 5 cut(s) 724, 745, 747, 878, 880
HinP1I GCGC 5 cut(s) 724, 745, 747, 878, 880
HindIII AAGCTT 2 cut(s) 237, 1068
HinfI GANTC 2 cut(s) 291, 887
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 79, 589
Hpy166II GTNNAC 2 cut(s) 265, 642
Hpy188I TCNGA 4 cut(s) 204, 283, 734, 886
Hpy188III TCNNGA 8 cut(s) 450, 549, 607, 761, 803, 891, 925, 1004
Hpy8I GTNNAC 2 cut(s) 265, 642
Hpy99I CGWCG 2 cut(s) 247, 787
HpyAV CCTTC 5 cut(s) 374, 573, 647, 670, 711
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 7 cut(s) 229, 456, 468, 721, 918, 993, 1064
HpyF10VI GCNNNNNNNGC 8 cut(s) 245, 254, 453, 485, 746, 755, 836, 1056
HpyF3I CTNAG 5 cut(s) 52, 411, 840, 883, 1027
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 2 cut(s) 928, 986
HspAI GCGC 5 cut(s) 724, 745, 747, 878, 880
Ksp22I TGATCA 1 cut(s) 774
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 6 cut(s) 75, 115, 693, 763, 774, 921
LmnI GCTCC 2 cut(s) 859, 893
Lsp1109I GCAGC 5 cut(s) 58, 266, 480, 733, 1068
LweI GCATC 3 cut(s) 443, 480, 488
MaeI CTAG 5 cut(s) 260, 567, 906, 947, 951
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 2 cut(s) 307, 607
MalI GATC 6 cut(s) 77, 117, 695, 765, 776, 923
MboI GATC 6 cut(s) 75, 115, 693, 763, 774, 921
MboII GAAGA 5 cut(s) 112, 142, 380, 415, 473
MhlI GDGCHC 1 cut(s) 597
MlsI TGGCCA 1 cut(s) 979
MluCI AATT 5 cut(s) 143, 198, 659, 716, 862
MluNI TGGCCA 1 cut(s) 979
MlyI GAGTC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 979
MscI TGGCCA 1 cut(s) 979
MseI TTAA 4 cut(s) 93, 213, 752, 795
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 979
MspA1I CMGCKG 3 cut(s) 121, 173, 251
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 26, 313
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 2 cut(s) 26, 313
MvnI CGCG 4 cut(s) 251, 451, 747, 880
MwoI GCNNNNNNNGC 8 cut(s) 245, 254, 453, 485, 746, 755, 836, 1056
NdeI CATATG 1 cut(s) 18
NdeII GATC 6 cut(s) 75, 115, 693, 763, 774, 921
NheI GCTAGC 1 cut(s) 946
NlaIII CATG 2 cut(s) 928, 986
NlaIV GGNNCC 6 cut(s) 31, 161, 517, 855, 895, 1011
NmuCI GTSAC 2 cut(s) 307, 607
NruI TCGCGA 1 cut(s) 451
NspI RCATGY 1 cut(s) 986
PagI TCATGA 1 cut(s) 924
PauI GCGCGC 2 cut(s) 745, 878
PciI ACATGT 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 887
PkrI GCNGC 7 cut(s) 48, 250, 253, 256, 470, 723, 1058
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PscI ACATGT 1 cut(s) 982
Psp6I CCWGG 2 cut(s) 24, 311
PspGI CCWGG 2 cut(s) 24, 311
PspN4I GGNNCC 6 cut(s) 31, 161, 517, 855, 895, 1011
PspPI GGNCC 3 cut(s) 193, 315, 769
PstI CTGCAG 2 cut(s) 920, 1066
PstNI CAGNNNCTG 1 cut(s) 772
PteI GCGCGC 2 cut(s) 745, 878
PvuII CAGCTG 2 cut(s) 121, 173
RruI TCGCGA 1 cut(s) 451
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 600
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 4 cut(s) 93, 213, 752, 795
SatI GCNGC 7 cut(s) 47, 249, 252, 255, 469, 722, 1057
Sau3AI GATC 6 cut(s) 75, 115, 693, 763, 774, 921
Sau96I GGNCC 3 cut(s) 193, 315, 769
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 2 cut(s) 26, 313
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 3 cut(s) 443, 480, 488
SfcI CTRYAG 3 cut(s) 61, 916, 1062
Sfr303I CCGCGG 1 cut(s) 252
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 600
SpeI ACTAGT 1 cut(s) 259
Sse9I AATT 5 cut(s) 143, 198, 659, 716, 862
SsiI CCGC 4 cut(s) 36, 249, 251, 524
SspI AATATT 1 cut(s) 504
SspMI CTAG 5 cut(s) 260, 567, 906, 947, 951
StyD4I CCNGG 2 cut(s) 24, 311
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 641
TaqI TCGA 3 cut(s) 242, 495, 1003
TasI AATT 5 cut(s) 143, 198, 659, 716, 862
TatI WGTACW 1 cut(s) 135
TauI GCSGC 2 cut(s) 251, 254
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 4 cut(s) 93, 213, 752, 795
Tru9I TTAA 4 cut(s) 93, 213, 752, 795
TscAI CASTG 2 cut(s) 47, 1066
TseFI GTSAC 2 cut(s) 307, 607
TseI GCWGC 5 cut(s) 46, 254, 468, 721, 1056
Tsp45I GTSAC 2 cut(s) 307, 607
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 2 cut(s) 47, 1066
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 143, 198
XceI RCATGY 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 5 cut(s) 260, 567, 906, 947, 951
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.