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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 255 |
| Acc36I | ACCTGC | 1 cut(s) | 724 |
| AccII | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| AclWI | GGATC | 3 cut(s) | 595, 837, 954 |
| AcuI | CTGAAG | 2 cut(s) | 779, 915 |
| AdeI | CACNNNGTG | 1 cut(s) | 437 |
| AfaI | GTAC | 2 cut(s) | 116, 478 |
| AgsI | TTSAA | 3 cut(s) | 83, 193, 934 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 462 |
| AjnI | CCWGG | 2 cut(s) | 135, 725 |
| AleI | CACNNNNGTG | 1 cut(s) | 524 |
| AluBI | AGCT | 3 cut(s) | 14, 333, 770 |
| AluI | AGCT | 3 cut(s) | 14, 333, 770 |
| Alw21I | GWGCWC | 1 cut(s) | 155 |
| Alw26I | GTCTC | 4 cut(s) | 135, 268, 371, 584 |
| AlwI | GGATC | 3 cut(s) | 595, 837, 954 |
| AoxI | GGCC | 2 cut(s) | 486, 879 |
| ApeKI | GCWGC | 3 cut(s) | 697, 730, 782 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 784, 816 |
| AspLEI | GCGC | 4 cut(s) | 189, 256, 755, 766 |
| AspS9I | GGNCC | 1 cut(s) | 879 |
| AsuC2I | CCSGG | 3 cut(s) | 59, 106, 569 |
| AsuHPI | GGTGA | 4 cut(s) | 85, 405, 449, 545 |
| AsuII | TTCGAA | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 1 cut(s) | 155 |
| BbvI | GCAGC | 3 cut(s) | 709, 742, 769 |
| BccI | CCATC | 5 cut(s) | 631, 633, 785, 869, 935 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 578, 612 |
| BciT130I | CCWGG | 2 cut(s) | 137, 727 |
| BcnI | CCSGG | 3 cut(s) | 59, 106, 569 |
| BcoDI | GTCTC | 4 cut(s) | 135, 268, 371, 584 |
| BfaI | CTAG | 1 cut(s) | 39 |
| BfmI | CTRYAG | 3 cut(s) | 334, 522, 939 |
| BfoI | RGCGCY | 2 cut(s) | 190, 756 |
| BfuAI | ACCTGC | 1 cut(s) | 724 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 761, 887 |
| BglII | AGATCT | 2 cut(s) | 646, 862 |
| BisI | GCNGC | 4 cut(s) | 698, 731, 783, 786 |
| BlsI | GCNGC | 4 cut(s) | 699, 732, 784, 787 |
| BmcAI | AGTACT | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 5 cut(s) | 59, 106, 137, 569, 727 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 462 |
| BmgT120I | GGNCC | 1 cut(s) | 879 |
| BmiI | GGNNCC | 3 cut(s) | 141, 680, 880 |
| BmrFI | CCNGG | 5 cut(s) | 59, 106, 137, 569, 727 |
| BmrI | ACTGGG | 1 cut(s) | 121 |
| BmsI | GCATC | 1 cut(s) | 857 |
| BmuI | ACTGGG | 1 cut(s) | 121 |
| BoxI | GACNNNNGTC | 1 cut(s) | 360 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 431, 463 |
| BpmI | CTGGAG | 1 cut(s) | 313 |
| Bpu14I | TTCGAA | 1 cut(s) | 557 |
| BpuMI | CCSGG | 3 cut(s) | 59, 106, 569 |
| BsaJI | CCNNGG | 3 cut(s) | 57, 135, 235 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bse1I | ACTGG | 1 cut(s) | 127 |
| BseBI | CCWGG | 2 cut(s) | 137, 727 |
| BseDI | CCNNGG | 3 cut(s) | 57, 135, 235 |
| BseGI | GGATG | 1 cut(s) | 880 |
| BseMII | CTCAG | 2 cut(s) | 363, 450 |
| BseNI | ACTGG | 1 cut(s) | 127 |
| BseRI | GAGGAG | 1 cut(s) | 671 |
| BseXI | GCAGC | 3 cut(s) | 709, 742, 769 |
| BsgI | GTGCAG | 1 cut(s) | 213 |
| Bsh1236I | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| Bsh1285I | CGRYCG | 2 cut(s) | 113, 453 |
| BshFI | GGCC | 2 cut(s) | 488, 881 |
| BsiEI | CGRYCG | 2 cut(s) | 113, 453 |
| BsiHKAI | GWGCWC | 1 cut(s) | 155 |
| BsiSI | CCGG | 3 cut(s) | 59, 106, 569 |
| BslFI | GGGAC | 2 cut(s) | 109, 226 |
| BsmAI | GTCTC | 4 cut(s) | 135, 268, 371, 584 |
| BsmBI | CGTCTC | 1 cut(s) | 371 |
| BsmFI | GGGAC | 2 cut(s) | 109, 226 |
| BsmI | GAATGC | 3 cut(s) | 343, 823, 940 |
| BsnI | GGCC | 2 cut(s) | 488, 881 |
| Bsp119I | TTCGAA | 1 cut(s) | 557 |
| Bsp1286I | GDGCHC | 1 cut(s) | 155 |
| Bsp143I | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| BspANI | GGCC | 2 cut(s) | 488, 881 |
| BspCNI | CTCAG | 2 cut(s) | 364, 451 |
| BspFNI | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| BspLI | GGNNCC | 3 cut(s) | 141, 680, 880 |
| BspMI | ACCTGC | 1 cut(s) | 724 |
| BspPI | GGATC | 3 cut(s) | 595, 837, 954 |
| BspT104I | TTCGAA | 1 cut(s) | 557 |
| BsrI | ACTGG | 1 cut(s) | 127 |
| BssECI | CCNNGG | 3 cut(s) | 57, 135, 235 |
| BssMI | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| Bst2UI | CCWGG | 2 cut(s) | 137, 727 |
| Bst4CI | ACNGT | 3 cut(s) | 166, 359, 514 |
| Bst6I | CTCTTC | 1 cut(s) | 537 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 650 |
| BstBI | TTCGAA | 1 cut(s) | 557 |
| BstC8I | GCNNGC | 7 cut(s) | 151, 244, 248, 252, 490, 494, 768 |
| BstDEI | CTNAG | 2 cut(s) | 372, 459 |
| BstDSI | CCRYGG | 1 cut(s) | 235 |
| BstF5I | GGATG | 1 cut(s) | 880 |
| BstFNI | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| BstH2I | RGCGCY | 2 cut(s) | 190, 756 |
| BstHHI | GCGC | 4 cut(s) | 189, 256, 755, 766 |
| BstKTI | GATC | 8 cut(s) | 101, 113, 341, 603, 649, 832, 865, 949 |
| BstMAI | GTCTC | 4 cut(s) | 135, 268, 371, 584 |
| BstMBI | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| BstMCI | CGRYCG | 2 cut(s) | 113, 453 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 243, 650, 761, 887 |
| BstNI | CCWGG | 2 cut(s) | 137, 727 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 360 |
| BstSCI | CCNGG | 5 cut(s) | 57, 104, 135, 567, 725 |
| BstSFI | CTRYAG | 3 cut(s) | 334, 522, 939 |
| BstUI | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| BstV1I | GCAGC | 3 cut(s) | 709, 742, 769 |
| BstX2I | RGATCY | 2 cut(s) | 646, 862 |
| BstYI | RGATCY | 2 cut(s) | 646, 862 |
| BsuRI | GGCC | 2 cut(s) | 488, 881 |
| BtgI | CCRYGG | 1 cut(s) | 235 |
| BtgZI | GCGATG | 2 cut(s) | 611, 763 |
| BtsCI | GGATG | 1 cut(s) | 880 |
| BtsIMutI | CAGTG | 2 cut(s) | 162, 510 |
| BveI | ACCTGC | 1 cut(s) | 724 |
| Cac8I | GCNNGC | 7 cut(s) | 151, 244, 248, 252, 490, 494, 768 |
| CfoI | GCGC | 4 cut(s) | 189, 256, 755, 766 |
| Cfr13I | GGNCC | 1 cut(s) | 879 |
| Cfr42I | CCGCGG | 1 cut(s) | 238 |
| CseI | GACGC | 4 cut(s) | 394, 460, 650, 788 |
| Csp6I | GTAC | 2 cut(s) | 115, 477 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 879, 914 |
| CviAII | CATG | 1 cut(s) | 607 |
| CviQI | GTAC | 2 cut(s) | 115, 477 |
| DdeI | CTNAG | 2 cut(s) | 372, 459 |
| DpnI | GATC | 8 cut(s) | 100, 112, 340, 602, 648, 831, 864, 948 |
| DpnII | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| DraIII | CACNNNGTG | 1 cut(s) | 437 |
| DriI | GACNNNNNGTC | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 537 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 462 |
| EarI | CTCTTC | 1 cut(s) | 537 |
| EciI | GGCGGA | 1 cut(s) | 496 |
| Eco57I | CTGAAG | 2 cut(s) | 779, 915 |
| EcoRII | CCWGG | 2 cut(s) | 135, 725 |
| Esp3I | CGTCTC | 1 cut(s) | 371 |
| FaeI | CATG | 1 cut(s) | 610 |
| FaqI | GGGAC | 2 cut(s) | 109, 226 |
| FatI | CATG | 1 cut(s) | 606 |
| FauI | CCCGC | 2 cut(s) | 95, 242 |
| Fnu4HI | GCNGC | 4 cut(s) | 698, 731, 783, 786 |
| FokI | GGATG | 1 cut(s) | 887 |
| Fsp4HI | GCNGC | 4 cut(s) | 698, 731, 783, 786 |
| FspBI | CTAG | 1 cut(s) | 39 |
| FspI | TGCGCA | 1 cut(s) | 255 |
| GlaI | GCGC | 4 cut(s) | 188, 255, 754, 765 |
| GluI | GCNGC | 4 cut(s) | 698, 731, 783, 786 |
| GsuI | CTGGAG | 1 cut(s) | 313 |
| HaeII | RGCGCY | 2 cut(s) | 190, 756 |
| HaeIII | GGCC | 2 cut(s) | 488, 881 |
| HapII | CCGG | 3 cut(s) | 59, 106, 569 |
| HgaI | GACGC | 4 cut(s) | 394, 460, 650, 788 |
| HhaI | GCGC | 4 cut(s) | 189, 256, 755, 766 |
| Hin1II | CATG | 1 cut(s) | 610 |
| Hin6I | GCGC | 4 cut(s) | 187, 254, 753, 764 |
| HinP1I | GCGC | 4 cut(s) | 187, 254, 753, 764 |
| HincII | GTYRAC | 1 cut(s) | 426 |
| HindII | GTYRAC | 1 cut(s) | 426 |
| HinfI | GANTC | 5 cut(s) | 122, 393, 442, 503, 706 |
| HpaII | CCGG | 3 cut(s) | 59, 106, 569 |
| HphI | GGTGA | 4 cut(s) | 85, 405, 449, 545 |
| Hpy166II | GTNNAC | 2 cut(s) | 426, 517 |
| Hpy188I | TCNGA | 3 cut(s) | 373, 468, 673 |
| Hpy188III | TCNNGA | 3 cut(s) | 619, 814, 931 |
| Hpy8I | GTNNAC | 2 cut(s) | 426, 517 |
| Hpy99I | CGWCG | 1 cut(s) | 366 |
| HpyAV | CCTTC | 2 cut(s) | 566, 754 |
| HpyCH4III | ACNGT | 3 cut(s) | 166, 359, 514 |
| HpyCH4V | TGCA | 4 cut(s) | 230, 403, 653, 907 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 243, 650, 761, 887 |
| HpyF3I | CTNAG | 2 cut(s) | 372, 459 |
| Hsp92II | CATG | 1 cut(s) | 610 |
| HspAI | GCGC | 4 cut(s) | 187, 254, 753, 764 |
| KspI | CCGCGG | 1 cut(s) | 238 |
| Kzo9I | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| LmnI | GCTCC | 4 cut(s) | 61, 139, 575, 684 |
| Lsp1109I | GCAGC | 3 cut(s) | 709, 742, 769 |
| LweI | GCATC | 1 cut(s) | 857 |
| MaeI | CTAG | 1 cut(s) | 39 |
| MaeIII | GTNAC | 5 cut(s) | 166, 206, 299, 382, 736 |
| MalI | GATC | 8 cut(s) | 100, 112, 340, 602, 648, 831, 864, 948 |
| MboI | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| MboII | GAAGA | 4 cut(s) | 205, 208, 554, 646 |
| MfeI | CAATTG | 1 cut(s) | 594 |
| MflI | RGATCY | 2 cut(s) | 646, 862 |
| MhlI | GDGCHC | 1 cut(s) | 155 |
| MluCI | AATT | 1 cut(s) | 594 |
| MlyI | GAGTC | 2 cut(s) | 131, 700 |
| MslI | CAYNNNNRTG | 2 cut(s) | 348, 524 |
| MspA1I | CMGCKG | 1 cut(s) | 237 |
| MspI | CCGG | 3 cut(s) | 59, 106, 569 |
| MspR9I | CCNGG | 5 cut(s) | 59, 106, 137, 569, 727 |
| MunI | CAATTG | 1 cut(s) | 594 |
| Mva1269I | GAATGC | 3 cut(s) | 343, 823, 940 |
| MvaI | CCWGG | 2 cut(s) | 137, 727 |
| MvnI | CGCG | 4 cut(s) | 237, 455, 665, 687 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 243, 650, 761, 887 |
| NciI | CCSGG | 3 cut(s) | 59, 106, 569 |
| NdeII | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| NlaIII | CATG | 1 cut(s) | 610 |
| NlaIV | GGNNCC | 3 cut(s) | 141, 680, 880 |
| NmuCI | GTSAC | 3 cut(s) | 206, 382, 736 |
| NsbI | TGCGCA | 1 cut(s) | 255 |
| NspV | TTCGAA | 1 cut(s) | 557 |
| OliI | CACNNNNGTG | 1 cut(s) | 524 |
| PctI | GAATGC | 3 cut(s) | 343, 823, 940 |
| PfeI | GAWTC | 3 cut(s) | 393, 442, 503 |
| PfoI | TCCNGGA | 1 cut(s) | 567 |
| PkrI | GCNGC | 4 cut(s) | 699, 732, 784, 787 |
| Ple19I | CGATCG | 1 cut(s) | 113 |
| PleI | GAGTC | 2 cut(s) | 130, 700 |
| PpsI | GAGTC | 2 cut(s) | 130, 700 |
| PshAI | GACNNNNGTC | 1 cut(s) | 360 |
| Psp6I | CCWGG | 2 cut(s) | 135, 725 |
| PspGI | CCWGG | 2 cut(s) | 135, 725 |
| PspN4I | GGNNCC | 3 cut(s) | 141, 680, 880 |
| PspPI | GGNCC | 1 cut(s) | 879 |
| PsuI | RGATCY | 2 cut(s) | 646, 862 |
| PvuI | CGATCG | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 116, 478 |
| RsaNI | GTAC | 2 cut(s) | 115, 477 |
| RseI | CAYNNNNRTG | 2 cut(s) | 348, 524 |
| SacII | CCGCGG | 1 cut(s) | 238 |
| SatI | GCNGC | 4 cut(s) | 698, 731, 783, 786 |
| Sau3AI | GATC | 8 cut(s) | 98, 110, 338, 600, 646, 829, 862, 946 |
| Sau96I | GGNCC | 1 cut(s) | 879 |
| ScaI | AGTACT | 1 cut(s) | 478 |
| SchI | GAGTC | 2 cut(s) | 131, 700 |
| ScrFI | CCNGG | 5 cut(s) | 59, 106, 137, 569, 727 |
| SduI | GDGCHC | 1 cut(s) | 155 |
| SetI | ASST | 8 cut(s) | 16, 78, 208, 329, 335, 584, 738, 772 |
| SfaNI | GCATC | 1 cut(s) | 857 |
| SfcI | CTRYAG | 3 cut(s) | 334, 522, 939 |
| Sfr303I | CCGCGG | 1 cut(s) | 238 |
| SfuI | TTCGAA | 1 cut(s) | 557 |
| SgrBI | CCGCGG | 1 cut(s) | 238 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 348, 524 |
| Sse9I | AATT | 1 cut(s) | 594 |
| SspMI | CTAG | 1 cut(s) | 39 |
| StyD4I | CCNGG | 5 cut(s) | 57, 104, 135, 567, 725 |
| TaaI | ACNGT | 3 cut(s) | 166, 359, 514 |
| TaqI | TCGA | 5 cut(s) | 120, 449, 557, 618, 693 |
| TasI | AATT | 1 cut(s) | 594 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 3 cut(s) | 393, 442, 503 |
| TscAI | CASTG | 2 cut(s) | 169, 517 |
| TseFI | GTSAC | 3 cut(s) | 206, 382, 736 |
| TseI | GCWGC | 3 cut(s) | 697, 730, 782 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 382, 736 |
| TspRI | CASTG | 2 cut(s) | 169, 517 |
| XspI | CTAG | 1 cut(s) | 39 |
| ZrmI | AGTACT | 1 cut(s) | 478 |