Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 342 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 449 |
| AccII | CGCG | 1 cut(s) | 329 |
| AciI | CCGC | 3 cut(s) | 125, 413, 416 |
| AclWI | GGATC | 3 cut(s) | 358, 428, 461 |
| AcoI | YGGCCR | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 98 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 449 |
| AgsI | TTSAA | 2 cut(s) | 262, 271 |
| AhlI | ACTAGT | 1 cut(s) | 421 |
| AjnI | CCWGG | 1 cut(s) | 189 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 308, 340 |
| AleI | CACNNNNGTG | 1 cut(s) | 32 |
| AluBI | AGCT | 4 cut(s) | 22, 135, 235, 295 |
| AluI | AGCT | 4 cut(s) | 22, 135, 235, 295 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| AlwI | GGATC | 3 cut(s) | 358, 428, 461 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 449 |
| AoxI | GGCC | 2 cut(s) | 144, 306 |
| ApeKI | GCWGC | 3 cut(s) | 224, 383, 487 |
| AspS9I | GGNCC | 2 cut(s) | 127, 187 |
| AsuC2I | CCSGG | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| AvaII | GGWCC | 2 cut(s) | 127, 187 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| BauI | CACGAG | 1 cut(s) | 359 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 3 cut(s) | 236, 370, 499 |
| BccI | CCATC | 4 cut(s) | 7, 174, 298, 385 |
| BciT130I | CCWGG | 1 cut(s) | 191 |
| BcnI | CCSGG | 1 cut(s) | 241 |
| BcuI | ACTAGT | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 104, 422 |
| BisI | GCNGC | 5 cut(s) | 225, 384, 414, 417, 488 |
| BlsI | GCNGC | 5 cut(s) | 226, 385, 415, 418, 489 |
| Bme1390I | CCNGG | 2 cut(s) | 191, 241 |
| Bme18I | GGWCC | 2 cut(s) | 127, 187 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 187 |
| BmiI | GGNNCC | 2 cut(s) | 285, 402 |
| BmrFI | CCNGG | 2 cut(s) | 191, 241 |
| BmrI | ACTGGG | 1 cut(s) | 459 |
| BmsI | GCATC | 2 cut(s) | 58, 58 |
| BmuI | ACTGGG | 1 cut(s) | 459 |
| BpmI | CTGGAG | 2 cut(s) | 198, 387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 131 |
| BpuMI | CCSGG | 1 cut(s) | 241 |
| Bsa29I | ATCGAT | 1 cut(s) | 302 |
| BsaAI | YACGTR | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| BsaWI | WCCGGW | 1 cut(s) | 319 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 171, 201 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 449 |
| Bse118I | RCCGGY | 1 cut(s) | 142 |
| Bse1I | ACTGG | 3 cut(s) | 181, 404, 454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 432 |
| BseBI | CCWGG | 1 cut(s) | 191 |
| BseCI | ATCGAT | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseJI | GATNNNNATC | 1 cut(s) | 432 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BseMII | CTCAG | 2 cut(s) | 70, 122 |
| BseNI | ACTGG | 3 cut(s) | 181, 404, 454 |
| BseRI | GAGGAG | 1 cut(s) | 44 |
| BseXI | GCAGC | 3 cut(s) | 236, 370, 499 |
| Bsh1236I | CGCG | 1 cut(s) | 329 |
| BshFI | GGCC | 2 cut(s) | 146, 308 |
| BshVI | ATCGAT | 1 cut(s) | 302 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 3 cut(s) | 143, 240, 320 |
| BsiWI | CGTACG | 1 cut(s) | 96 |
| BslFI | GGGAC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BsmFI | GGGAC | 1 cut(s) | 106 |
| BsmI | GAATGC | 1 cut(s) | 85 |
| BsnI | GGCC | 2 cut(s) | 146, 308 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 4 cut(s) | 363, 378, 433, 453 |
| Bsp68I | TCGCGA | 1 cut(s) | 329 |
| BspACI | CCGC | 3 cut(s) | 125, 413, 416 |
| BspANI | GGCC | 2 cut(s) | 146, 308 |
| BspCNI | CTCAG | 2 cut(s) | 69, 123 |
| BspDI | ATCGAT | 1 cut(s) | 302 |
| BspFNI | CGCG | 1 cut(s) | 329 |
| BspLI | GGNNCC | 2 cut(s) | 285, 402 |
| BspPI | GGATC | 3 cut(s) | 358, 428, 461 |
| BsrFI | RCCGGY | 1 cut(s) | 142 |
| BsrI | ACTGG | 3 cut(s) | 181, 404, 454 |
| BssAI | RCCGGY | 1 cut(s) | 142 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 4 cut(s) | 363, 378, 433, 453 |
| BssSI | CACGAG | 1 cut(s) | 359 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst2BI | CACGAG | 1 cut(s) | 359 |
| Bst2UI | CCWGG | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstBAI | YACGTR | 1 cut(s) | 100 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 56, 131 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstFNI | CGCG | 1 cut(s) | 329 |
| BstKTI | GATC | 4 cut(s) | 366, 381, 436, 456 |
| BstMBI | GATC | 4 cut(s) | 363, 378, 433, 453 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 292, 353 |
| BstNI | CCWGG | 1 cut(s) | 191 |
| BstSCI | CCNGG | 2 cut(s) | 189, 239 |
| BstUI | CGCG | 1 cut(s) | 329 |
| BstV1I | GCAGC | 3 cut(s) | 236, 370, 499 |
| BstX2I | RGATCY | 2 cut(s) | 363, 433 |
| BstYI | RGATCY | 2 cut(s) | 363, 433 |
| Bsu15I | ATCGAT | 1 cut(s) | 302 |
| BsuRI | GGCC | 2 cut(s) | 146, 308 |
| BsuTUI | ATCGAT | 1 cut(s) | 302 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 447 |
| BtuMI | TCGCGA | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CaiI | CAGNNNCTG | 1 cut(s) | 449 |
| Cfr10I | RCCGGY | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 187 |
| ClaI | ATCGAT | 1 cut(s) | 302 |
| Csp6I | GTAC | 1 cut(s) | 97 |
| CviAII | CATG | 1 cut(s) | 460 |
| CviQI | GTAC | 1 cut(s) | 97 |
| DdeI | CTNAG | 2 cut(s) | 56, 131 |
| DpnI | GATC | 4 cut(s) | 365, 380, 435, 455 |
| DpnII | GATC | 4 cut(s) | 363, 378, 433, 453 |
| EaeI | YGGCCR | 1 cut(s) | 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco47I | GGWCC | 2 cut(s) | 127, 187 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 1 cut(s) | 189 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| FaeI | CATG | 1 cut(s) | 463 |
| FaiI | YATR | 6 cut(s) | 213, 221, 334, 336, 342, 461 |
| FaqI | GGGAC | 1 cut(s) | 106 |
| FatI | CATG | 1 cut(s) | 459 |
| Fnu4HI | GCNGC | 5 cut(s) | 225, 384, 414, 417, 488 |
| FokI | GGATG | 1 cut(s) | 440 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 5 cut(s) | 225, 384, 414, 417, 488 |
| FspBI | CTAG | 2 cut(s) | 104, 422 |
| GluI | GCNGC | 5 cut(s) | 225, 384, 414, 417, 488 |
| GsuI | CTGGAG | 2 cut(s) | 198, 387 |
| HaeIII | GGCC | 2 cut(s) | 146, 308 |
| HapII | CCGG | 3 cut(s) | 143, 240, 320 |
| Hin1II | CATG | 1 cut(s) | 463 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 3 cut(s) | 143, 240, 320 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 477 |
| Hpy188I | TCNGA | 1 cut(s) | 59 |
| Hpy188III | TCNNGA | 5 cut(s) | 87, 130, 328, 443, 506 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 477 |
| Hpy99I | CGWCG | 3 cut(s) | 200, 374, 495 |
| HpyAV | CCTTC | 1 cut(s) | 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4IV | ACGT | 2 cut(s) | 95, 99 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 292, 353 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 131 |
| HpySE526I | ACGT | 2 cut(s) | 95, 99 |
| Hsp92II | CATG | 1 cut(s) | 463 |
| KroI | GCCGGC | 1 cut(s) | 142 |
| KroNI | GCCGGC | 1 cut(s) | 144 |
| Kzo9I | GATC | 4 cut(s) | 363, 378, 433, 453 |
| LmnI | GCTCC | 3 cut(s) | 19, 283, 406 |
| Lsp1109I | GCAGC | 3 cut(s) | 236, 370, 499 |
| LweI | GCATC | 2 cut(s) | 58, 58 |
| MaeI | CTAG | 2 cut(s) | 104, 422 |
| MaeII | ACGT | 2 cut(s) | 95, 99 |
| MaeIII | GTNAC | 1 cut(s) | 406 |
| MalI | GATC | 4 cut(s) | 365, 380, 435, 455 |
| MboI | GATC | 4 cut(s) | 363, 378, 433, 453 |
| MboII | GAAGA | 6 cut(s) | 88, 212, 256, 259, 283, 400 |
| MflI | RGATCY | 2 cut(s) | 363, 433 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MnlI | CCTC | 7 cut(s) | 25, 65, 66, 83, 196, 377, 391 |
| MroNI | GCCGGC | 1 cut(s) | 142 |
| MseI | TTAA | 1 cut(s) | 291 |
| MslI | CAYNNNNRTG | 1 cut(s) | 32 |
| MspA1I | CMGCKG | 1 cut(s) | 413 |
| MspI | CCGG | 3 cut(s) | 143, 240, 320 |
| MspR9I | CCNGG | 2 cut(s) | 191, 241 |
| Mva1269I | GAATGC | 1 cut(s) | 85 |
| MvaI | CCWGG | 1 cut(s) | 191 |
| MvnI | CGCG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 292, 353 |
| NaeI | GCCGGC | 1 cut(s) | 144 |
| NciI | CCSGG | 1 cut(s) | 241 |
| NdeII | GATC | 4 cut(s) | 363, 378, 433, 453 |
| NgoMIV | GCCGGC | 1 cut(s) | 142 |
| NlaIII | CATG | 1 cut(s) | 463 |
| NlaIV | GGNNCC | 2 cut(s) | 285, 402 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| NruI | TCGCGA | 1 cut(s) | 329 |
| OliI | CACNNNNGTG | 1 cut(s) | 32 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 204, 366 |
| PctI | GAATGC | 1 cut(s) | 85 |
| PdiI | GCCGGC | 1 cut(s) | 144 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| Pfl23II | CGTACG | 1 cut(s) | 96 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 449 |
| PfoI | TCCNGGA | 1 cut(s) | 189 |
| PkrI | GCNGC | 5 cut(s) | 226, 385, 415, 418, 489 |
| Ppu21I | YACGTR | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 342 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 189 |
| PspGI | CCWGG | 1 cut(s) | 189 |
| PspLI | CGTACG | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 2 cut(s) | 285, 402 |
| PspPI | GGNCC | 2 cut(s) | 127, 187 |
| PstNI | CAGNNNCTG | 1 cut(s) | 449 |
| PsuI | RGATCY | 2 cut(s) | 363, 433 |
| RruI | TCGCGA | 1 cut(s) | 329 |
| RsaI | GTAC | 1 cut(s) | 98 |
| RsaNI | GTAC | 1 cut(s) | 97 |
| RseI | CAYNNNNRTG | 1 cut(s) | 32 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| SatI | GCNGC | 5 cut(s) | 225, 384, 414, 417, 488 |
| Sau3AI | GATC | 4 cut(s) | 363, 378, 433, 453 |
| Sau96I | GGNCC | 2 cut(s) | 127, 187 |
| ScrFI | CCNGG | 2 cut(s) | 191, 241 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 8 cut(s) | 24, 36, 98, 102, 109, 137, 237, 297 |
| SfaNI | GCATC | 2 cut(s) | 58, 58 |
| SinI | GGWCC | 2 cut(s) | 127, 187 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 32 |
| SpeI | ACTAGT | 1 cut(s) | 421 |
| SsiI | CCGC | 3 cut(s) | 125, 413, 416 |
| SspMI | CTAG | 2 cut(s) | 104, 422 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StyD4I | CCNGG | 2 cut(s) | 189, 239 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaiI | ACGT | 2 cut(s) | 98, 102 |
| TaqI | TCGA | 5 cut(s) | 11, 45, 302, 369, 518 |
| TauI | GCSGC | 2 cut(s) | 416, 419 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TscAI | CASTG | 2 cut(s) | 181, 454 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| TseI | GCWGC | 3 cut(s) | 224, 383, 487 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspGWI | ACGGA | 1 cut(s) | 508 |
| TspRI | CASTG | 2 cut(s) | 181, 454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 449 |
| VpaK11BI | GGWCC | 2 cut(s) | 127, 187 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 173 |
| XspI | CTAG | 2 cut(s) | 104, 422 |