Rmu_sc0000768.1_g000018

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000768.1
OG0000057
Physical Location & Seq
Reverse (-)
50663 .. 52142
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000768.1_g000018.1.cds

Sequence Viewer

Length: 1314 bp
atggtttacgttaatttcccaaaccacaagacctccagttacagaccgcattctcgcgcggactgtcgtggtctttctgaagaacaagtgactcaaaggttttctcacccccaatcatccgacatgtcaacagagcagagtggaactccacagcccgctactgagggtgacaaagatcctcctgtccagcctaataaggctggcggagcggccaacgctgcccaagtagccgcaagtgaggggacaatcaagccttttgtacccattatccccccggcgaatgcgagcattgaggagcggcttgccatctttcaacaaaataatgttacatataatgaaaggatggaaaaagccctcgcggaagaatgccgaaggctggatgaagtttcgatctcactacgaaatcttgaagtgagttcacgacaaacacaggggcagtggcaagatacgtacaagaaaagccatgagaatcataaagagcttgtggatatgatgattggccaagccgctcagagcaagcgtatctccgctgacatcgccaatcaggccaagcatacaacggcagagttggcagtactttgcaacaagaggtccaatctcgcgacccaagttgccatgcagaaagctgagttggaccaggctaaggaagtgatgaataaggctttaggggatcctaacgccattcttggctcacttggacaaccttcaggtaccggcaaatacatacctcttaatgctcgggagaaaattagctacaataccgtcacaccggctacagcggcctctgcctcagcaacaaaaaacaaggacaaagccctgattggcactctgatcaaaataacggccttggtaaaggatgtggccgtaccagctatgacattgcagccatccactattccccggacaattcgcctaggggaaggcacagtagccgctagccaggctatatccccacagaatgctcaccagaacgtggcgatacctccccttcttccgagctatgtgagacgtgaagaggttgaggagatgattaggctggctaatcctagagcccacctagatggggtctatgacggaacgttcccacaacatataatgctcgtgccttttcccagaggctataaaaatatcatattctctactttttcaggagaggatactgaggacacggtaacccatcttgccaggtttaaagtgcagtgcgaccagtaccagaacgatgacgtcctaaagtgcaggatctttggcacttctctatttgtcgcgacttttagattgttttctaaattgcgaccagggtcagtggttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

437

Amino Acids

47.91

Weight (kDa)

8.45

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1227
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 973
AccBSI CCGCTC 3 cut(s) 209, 298, 509
AccII CGCG 5 cut(s) 57, 59, 359, 602, 1265
AclI AACGTT 1 cut(s) 1079
AclWI GGATC 4 cut(s) 170, 665, 678, 1247
AcoI YGGCCR 3 cut(s) 210, 499, 861
AcuI CTGAAG 2 cut(s) 99, 690
AcyI GRCGYC 1 cut(s) 1224
AfaI GTAC 6 cut(s) 261, 452, 576, 712, 867, 1211
AfiI CCNNNNNNNGG 4 cut(s) 376, 643, 973, 1063
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 314, 410
AjiI CACGTC 1 cut(s) 1010
AjnI CCWGG 4 cut(s) 636, 939, 1184, 1294
AjuI GAANNNNNNNTTGG 2 cut(s) 614, 646
AluBI AGCT 5 cut(s) 481, 626, 753, 872, 999
AluI AGCT 5 cut(s) 481, 626, 753, 872, 999
Alw26I GTCTC 1 cut(s) 1000
AlwI GGATC 4 cut(s) 170, 665, 678, 1247
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 6 cut(s) 210, 499, 546, 780, 843, 861
ApeKI GCWGC 2 cut(s) 218, 883
Asp718I GGTACC 1 cut(s) 710
AspA2I CCTAGG 1 cut(s) 913
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 591, 634
AsuC2I CCSGG 2 cut(s) 275, 901
AsuHPI GGTGA 3 cut(s) 98, 179, 956
AsuNHI GCTAGC 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 2 cut(s) 591, 634
AvrII CCTAGG 1 cut(s) 913
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 1054
BauI CACGAG 1 cut(s) 1100
BbvCI CCTCAGC 1 cut(s) 790
BbvI GCAGC 2 cut(s) 205, 895
BccI CCATC 5 cut(s) 314, 337, 895, 1055, 1185
BceAI ACGGC 3 cut(s) 576, 848, 858
BciT130I CCWGG 4 cut(s) 638, 941, 1186, 1296
BciVI GTATCC 1 cut(s) 1150
BclI TGATCA 1 cut(s) 831
BcnI CCSGG 2 cut(s) 275, 901
BcoDI GTCTC 1 cut(s) 1000
BfaI CTAG 4 cut(s) 914, 936, 1047, 1058
BfmI CTRYAG 1 cut(s) 774
BfuI GTATCC 1 cut(s) 1150
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 8 cut(s) 210, 219, 231, 299, 507, 780, 884, 933
BlnI CCTAGG 1 cut(s) 913
BlsI GCNGC 8 cut(s) 211, 220, 232, 300, 508, 781, 885, 934
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 6 cut(s) 275, 638, 901, 941, 1186, 1296
Bme18I GGWCC 2 cut(s) 591, 634
BmeT110I CYCGRG 1 cut(s) 738
BmgBI CACGTC 1 cut(s) 1010
BmgT120I GGNCC 2 cut(s) 591, 634
BmiI GGNNCC 2 cut(s) 672, 712
BmrFI CCNGG 6 cut(s) 275, 638, 901, 941, 1186, 1296
BmtI GCTAGC 1 cut(s) 939
BoxI GACNNNNGTC 1 cut(s) 1297
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 1 cut(s) 19
Bpu10I CCTNAGC 2 cut(s) 642, 790
BpuMI CCSGG 2 cut(s) 275, 901
BsaAI YACGTR 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 1224
BsaJI CCNNGG 5 cut(s) 273, 846, 899, 913, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 643, 973, 1063
Bse118I RCCGGY 2 cut(s) 713, 769
Bse1I ACTGG 2 cut(s) 36, 1207
Bse3DI GCAATG 1 cut(s) 878
BseBI CCWGG 4 cut(s) 638, 941, 1186, 1296
BseDI CCNNGG 5 cut(s) 273, 846, 899, 913, 1295
BseGI GGATG 5 cut(s) 116, 348, 385, 862, 887
BseLI CCNNNNNNNGG 4 cut(s) 376, 643, 973, 1063
BseMI GCAATG 1 cut(s) 878
BseMII CTCAG 5 cut(s) 153, 524, 618, 804, 1152
BseNI ACTGG 2 cut(s) 36, 1207
BseRI GAGGAG 2 cut(s) 308, 1037
BseXI GCAGC 2 cut(s) 205, 895
BsgI GTGCAG 2 cut(s) 1217, 1255
Bsh1236I CGCG 5 cut(s) 57, 59, 359, 602, 1265
BshFI GGCC 6 cut(s) 212, 501, 548, 782, 845, 863
BshNI GGYRCC 1 cut(s) 710
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 4 cut(s) 275, 714, 770, 901
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 4 cut(s) 376, 643, 973, 1063
BsmAI GTCTC 1 cut(s) 1000
BsmBI CGTCTC 1 cut(s) 1000
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 4 cut(s) 49, 286, 371, 964
BsnI GGCC 6 cut(s) 212, 501, 548, 782, 845, 863
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp143I GATC 5 cut(s) 175, 390, 670, 831, 1239
Bsp68I TCGCGA 2 cut(s) 602, 1265
BspANI GGCC 6 cut(s) 212, 501, 548, 782, 845, 863
BspCNI CTCAG 5 cut(s) 154, 523, 619, 803, 1153
BspFNI CGCG 5 cut(s) 57, 59, 359, 602, 1265
BspLI GGNNCC 2 cut(s) 672, 712
BspOI GCTAGC 1 cut(s) 939
BspPI GGATC 4 cut(s) 170, 665, 678, 1247
BspT107I GGYRCC 1 cut(s) 710
BsrBI CCGCTC 3 cut(s) 209, 298, 509
BsrDI GCAATG 1 cut(s) 878
BsrFI RCCGGY 2 cut(s) 713, 769
BsrI ACTGG 2 cut(s) 36, 1207
BssAI RCCGGY 2 cut(s) 713, 769
BssECI CCNNGG 5 cut(s) 273, 846, 899, 913, 1295
BssMI GATC 5 cut(s) 175, 390, 670, 831, 1239
BssNI GRCGYC 1 cut(s) 1224
BssSI CACGAG 1 cut(s) 1100
BssT1I CCWWGG 2 cut(s) 846, 913
Bst2BI CACGAG 1 cut(s) 1100
Bst2UI CCWGG 4 cut(s) 638, 941, 1186, 1296
Bst4CI ACNGT 4 cut(s) 65, 763, 928, 1171
Bst6I CTCTTC 1 cut(s) 1008
BstACI GRCGYC 1 cut(s) 1224
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 7 cut(s) 156, 202, 286, 303, 518, 937, 1038
BstDEI CTNAG 6 cut(s) 162, 510, 627, 642, 790, 1161
BstEII GGTNACC 1 cut(s) 1171
BstF5I GGATG 5 cut(s) 116, 348, 385, 862, 887
BstFNI CGCG 5 cut(s) 57, 59, 359, 602, 1265
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 5 cut(s) 178, 393, 673, 834, 1242
BstMAI GTCTC 1 cut(s) 1000
BstMBI GATC 5 cut(s) 175, 390, 670, 831, 1239
BstNI CCWGG 4 cut(s) 638, 941, 1186, 1296
BstNSI RCATGY 1 cut(s) 127
BstPAI GACNNNNGTC 1 cut(s) 1297
BstPI GGTNACC 1 cut(s) 1171
BstSCI CCNGG 6 cut(s) 273, 636, 899, 939, 1184, 1294
BstSFI CTRYAG 1 cut(s) 774
BstSNI TACGTA 1 cut(s) 450
BstUI CGCG 5 cut(s) 57, 59, 359, 602, 1265
BstV1I GCAGC 2 cut(s) 205, 895
BstX2I RGATCY 3 cut(s) 175, 670, 1239
BstXI CCANNNNNNTGG 1 cut(s) 1061
BstYI RGATCY 3 cut(s) 175, 670, 1239
BsuI GTATCC 1 cut(s) 1150
BsuRI GGCC 6 cut(s) 212, 501, 548, 782, 845, 863
BtgZI GCGATG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 1010
BtsCI GGATG 5 cut(s) 116, 348, 385, 862, 887
BtsI GCAGTG 2 cut(s) 443, 1205
BtsIMutI CAGTG 3 cut(s) 443, 1205, 1308
BtuMI TCGCGA 2 cut(s) 602, 1265
Cac8I GCNNGC 7 cut(s) 156, 202, 286, 303, 518, 937, 1038
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 713, 769
Cfr13I GGNCC 2 cut(s) 591, 634
Csp6I GTAC 6 cut(s) 260, 451, 575, 711, 866, 1210
CviAII CATG 3 cut(s) 124, 464, 616
CviQI GTAC 6 cut(s) 260, 451, 575, 711, 866, 1210
DdeI CTNAG 6 cut(s) 162, 510, 627, 642, 790, 1161
DpnI GATC 5 cut(s) 177, 392, 672, 833, 1241
DpnII GATC 5 cut(s) 175, 390, 670, 831, 1239
DraI TTTAAA 1 cut(s) 1192
EaeI YGGCCR 3 cut(s) 210, 499, 861
Eam1104I CTCTTC 1 cut(s) 1008
EarI CTCTTC 1 cut(s) 1008
EciI GGCGGA 1 cut(s) 219
Eco105I TACGTA 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 846, 913
Eco24I GRGCYC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 591, 634
Eco57I CTGAAG 2 cut(s) 99, 690
Eco88I CYCGRG 1 cut(s) 738
Eco91I GGTNACC 1 cut(s) 1171
EcoO65I GGTNACC 1 cut(s) 1171
EcoRII CCWGG 4 cut(s) 636, 939, 1184, 1294
EcoT14I CCWWGG 2 cut(s) 846, 913
EcoT38I GRGCYC 1 cut(s) 1054
ErhI CCWWGG 2 cut(s) 846, 913
Esp3I CGTCTC 1 cut(s) 1000
FaeI CATG 3 cut(s) 127, 467, 619
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 123, 463, 615
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 1 cut(s) 831
Fnu4HI GCNGC 8 cut(s) 210, 219, 231, 299, 507, 780, 884, 933
FokI GGATG 5 cut(s) 103, 355, 392, 869, 874
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 8 cut(s) 210, 219, 231, 299, 507, 780, 884, 933
FspBI CTAG 4 cut(s) 914, 936, 1047, 1058
GlaI GCGC 1 cut(s) 58
GluI GCNGC 8 cut(s) 210, 219, 231, 299, 507, 780, 884, 933
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 6 cut(s) 212, 501, 548, 782, 845, 863
HapII CCGG 4 cut(s) 275, 714, 770, 901
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 1224
Hin1II CATG 3 cut(s) 127, 467, 619
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 91, 469
HpaII CCGG 4 cut(s) 275, 714, 770, 901
HphI GGTGA 3 cut(s) 98, 179, 956
Hpy166II GTNNAC 3 cut(s) 7, 129, 419
Hpy188I TCNGA 5 cut(s) 79, 121, 513, 831, 996
Hpy188III TCNNGA 6 cut(s) 407, 420, 601, 740, 1149, 1264
Hpy8I GTNNAC 3 cut(s) 7, 129, 419
HpyAV CCTTC 4 cut(s) 366, 714, 914, 998
HpyCH4III ACNGT 4 cut(s) 65, 763, 928, 1171
HpyCH4IV ACGT 6 cut(s) 9, 449, 972, 1009, 1079, 1224
HpyCH4V TGCA 5 cut(s) 582, 619, 883, 1198, 1236
HpyF3I CTNAG 6 cut(s) 162, 510, 627, 642, 790, 1161
HpySE526I ACGT 6 cut(s) 9, 449, 972, 1009, 1079, 1224
Hsp92I GRCGYC 1 cut(s) 1224
Hsp92II CATG 3 cut(s) 127, 467, 619
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 714
Ksp22I TGATCA 1 cut(s) 831
Kzo9I GATC 5 cut(s) 175, 390, 670, 831, 1239
LmnI GCTCC 2 cut(s) 206, 295
Lsp1109I GCAGC 2 cut(s) 205, 895
MaeI CTAG 4 cut(s) 914, 936, 1047, 1058
MaeII ACGT 6 cut(s) 9, 449, 972, 1009, 1079, 1224
MaeIII GTNAC 6 cut(s) 38, 88, 167, 325, 763, 1171
MalI GATC 5 cut(s) 177, 392, 672, 833, 1241
MbiI CCGCTC 3 cut(s) 209, 298, 509
MboI GATC 5 cut(s) 175, 390, 670, 831, 1239
MboII GAAGA 4 cut(s) 92, 374, 983, 1025
MflI RGATCY 3 cut(s) 175, 670, 1239
MhlI GDGCHC 1 cut(s) 1054
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 4 cut(s) 13, 747, 906, 1286
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 144, 612
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
MseI TTAA 3 cut(s) 12, 732, 1191
MslI CAYNNNNRTG 1 cut(s) 1059
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 2 cut(s) 530, 779
MspI CCGG 4 cut(s) 275, 714, 770, 901
MspR9I CCNGG 6 cut(s) 275, 638, 901, 941, 1186, 1296
Mva1269I GAATGC 4 cut(s) 49, 286, 371, 964
MvaI CCWGG 4 cut(s) 638, 941, 1186, 1296
MvnI CGCG 5 cut(s) 57, 59, 359, 602, 1265
NciI CCSGG 2 cut(s) 275, 901
NdeII GATC 5 cut(s) 175, 390, 670, 831, 1239
NheI GCTAGC 1 cut(s) 935
NlaIII CATG 3 cut(s) 127, 467, 619
NlaIV GGNNCC 2 cut(s) 672, 712
NmuCI GTSAC 3 cut(s) 88, 167, 763
NruI TCGCGA 2 cut(s) 602, 1265
NspI RCATGY 1 cut(s) 127
PciI ACATGT 1 cut(s) 123
PctI GAATGC 4 cut(s) 49, 286, 371, 964
PfeI GAWTC 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 973
PkrI GCNGC 8 cut(s) 211, 220, 232, 300, 508, 781, 885, 934
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 450
PscI ACATGT 1 cut(s) 123
PshAI GACNNNNGTC 1 cut(s) 1297
Psp1406I AACGTT 1 cut(s) 1079
Psp6I CCWGG 4 cut(s) 636, 939, 1184, 1294
PspEI GGTNACC 1 cut(s) 1171
PspGI CCWGG 4 cut(s) 636, 939, 1184, 1294
PspN4I GGNNCC 2 cut(s) 672, 712
PspPI GGNCC 2 cut(s) 591, 634
PsuI RGATCY 3 cut(s) 175, 670, 1239
RruI TCGCGA 2 cut(s) 602, 1265
RsaI GTAC 6 cut(s) 261, 452, 576, 712, 867, 1211
RsaNI GTAC 6 cut(s) 260, 451, 575, 711, 866, 1210
RseI CAYNNNNRTG 1 cut(s) 1059
SaqAI TTAA 3 cut(s) 12, 732, 1191
SatI GCNGC 8 cut(s) 210, 219, 231, 299, 507, 780, 884, 933
Sau3AI GATC 5 cut(s) 175, 390, 670, 831, 1239
Sau96I GGNCC 2 cut(s) 591, 634
ScaI AGTACT 1 cut(s) 576
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 6 cut(s) 275, 638, 901, 941, 1186, 1296
SduI GDGCHC 1 cut(s) 1054
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 2 cut(s) 591, 634
SmiMI CAYNNNNRTG 1 cut(s) 1059
SnaBI TACGTA 1 cut(s) 450
Sse9I AATT 4 cut(s) 13, 747, 906, 1286
SspMI CTAG 4 cut(s) 914, 936, 1047, 1058
StyD4I CCNGG 6 cut(s) 273, 636, 899, 939, 1184, 1294
StyI CCWWGG 2 cut(s) 846, 913
TaaI ACNGT 4 cut(s) 65, 763, 928, 1171
TaiI ACGT 6 cut(s) 12, 452, 975, 1012, 1082, 1227
TaqI TCGA 1 cut(s) 389
TasI AATT 4 cut(s) 13, 747, 906, 1286
TatI WGTACW 1 cut(s) 574
TauI GCSGC 6 cut(s) 212, 233, 301, 509, 782, 935
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 3 cut(s) 12, 732, 1191
Tru9I TTAA 3 cut(s) 12, 732, 1191
TscAI CASTG 3 cut(s) 443, 1205, 1308
TseFI GTSAC 3 cut(s) 88, 167, 763
TseI GCWGC 2 cut(s) 218, 883
Tsp45I GTSAC 3 cut(s) 88, 167, 763
TspDTI ATGAA 3 cut(s) 351, 396, 668
TspGWI ACGGA 1 cut(s) 1089
TspRI CASTG 3 cut(s) 443, 1205, 1308
Van91I CCANNNNNTGG 1 cut(s) 973
VpaK11BI GGWCC 2 cut(s) 591, 634
XceI RCATGY 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 913
XspI CTAG 4 cut(s) 914, 936, 1047, 1058
ZraI GACGTC 1 cut(s) 1225
ZrmI AGTACT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.