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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 703 |
| Acc16I | TGCGCA | 1 cut(s) | 459 |
| AccBSI | CCGCTC | 1 cut(s) | 751 |
| AccII | CGCG | 2 cut(s) | 812, 874 |
| AciI | CCGC | 9 cut(s) | 58, 106, 109, 131, 156, 609, 657, 751, 812 |
| AclWI | GGATC | 1 cut(s) | 354 |
| AcoI | YGGCCR | 1 cut(s) | 681 |
| AcsI | RAATTY | 1 cut(s) | 289 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AfaI | GTAC | 2 cut(s) | 246, 905 |
| AflIII | ACRYGT | 1 cut(s) | 576 |
| AgsI | TTSAA | 3 cut(s) | 295, 767, 863 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AleI | CACNNNNGTG | 1 cut(s) | 504 |
| AluBI | AGCT | 3 cut(s) | 192, 265, 323 |
| AluI | AGCT | 3 cut(s) | 192, 265, 323 |
| Alw21I | GWGCWC | 1 cut(s) | 378 |
| Alw26I | GTCTC | 2 cut(s) | 92, 232 |
| AlwI | GGATC | 1 cut(s) | 354 |
| AoxI | GGCC | 2 cut(s) | 658, 681 |
| ApeKI | GCWGC | 7 cut(s) | 111, 122, 141, 150, 158, 161, 779 |
| ApoI | RAATTY | 1 cut(s) | 289 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 45, 630 |
| AspA2I | CCTAGG | 1 cut(s) | 311 |
| AspLEI | GCGC | 1 cut(s) | 460 |
| AspS9I | GGNCC | 1 cut(s) | 659 |
| AsuC2I | CCSGG | 1 cut(s) | 728 |
| AsuHPI | GGTGA | 4 cut(s) | 79, 95, 209, 561 |
| AvrII | CCTAGG | 1 cut(s) | 311 |
| BaeGI | GKGCMC | 1 cut(s) | 717 |
| BalI | TGGCCA | 1 cut(s) | 683 |
| BanII | GRGCYC | 1 cut(s) | 17 |
| BauI | CACGAG | 2 cut(s) | 10, 504 |
| Bbv12I | GWGCWC | 1 cut(s) | 378 |
| BbvI | GCAGC | 7 cut(s) | 98, 128, 134, 145, 148, 162, 766 |
| BccI | CCATC | 2 cut(s) | 574, 790 |
| BceAI | ACGGC | 1 cut(s) | 405 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 832, 866 |
| BclI | TGATCA | 1 cut(s) | 397 |
| BcnI | CCSGG | 1 cut(s) | 728 |
| BcoDI | GTCTC | 2 cut(s) | 92, 232 |
| BfaI | CTAG | 5 cut(s) | 68, 78, 189, 312, 916 |
| BfmI | CTRYAG | 2 cut(s) | 120, 148 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 680 |
| BlnI | CCTAGG | 1 cut(s) | 311 |
| Bme1390I | CCNGG | 1 cut(s) | 728 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 659 |
| BmrFI | CCNGG | 1 cut(s) | 728 |
| BmsI | GCATC | 1 cut(s) | 184 |
| BpuMI | CCSGG | 1 cut(s) | 728 |
| BsaAI | YACGTR | 1 cut(s) | 903 |
| BsaI | GGTCTC | 1 cut(s) | 232 |
| BsaJI | CCNNGG | 4 cut(s) | 311, 387, 439, 726 |
| Bse3DI | GCAATG | 1 cut(s) | 170 |
| BseDI | CCNNGG | 4 cut(s) | 311, 387, 439, 726 |
| BseGI | GGATG | 2 cut(s) | 175, 801 |
| BseMI | GCAATG | 1 cut(s) | 170 |
| BseMII | CTCAG | 2 cut(s) | 519, 606 |
| BseRI | GAGGAG | 4 cut(s) | 174, 187, 370, 761 |
| BseSI | GKGCMC | 1 cut(s) | 717 |
| BseXI | GCAGC | 7 cut(s) | 98, 128, 134, 145, 148, 162, 766 |
| BsgI | GTGCAG | 1 cut(s) | 417 |
| Bsh1236I | CGCG | 2 cut(s) | 812, 874 |
| BshFI | GGCC | 2 cut(s) | 660, 683 |
| BsiHKAI | GWGCWC | 1 cut(s) | 378 |
| BsiSI | CCGG | 1 cut(s) | 728 |
| BslFI | GGGAC | 2 cut(s) | 709, 900 |
| BsmAI | GTCTC | 2 cut(s) | 92, 232 |
| BsmFI | GGGAC | 2 cut(s) | 709, 900 |
| BsmI | GAATGC | 1 cut(s) | 739 |
| BsnI | GGCC | 2 cut(s) | 660, 683 |
| Bso31I | GGTCTC | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 3 cut(s) | 17, 378, 717 |
| Bsp1407I | TGTACA | 1 cut(s) | 244 |
| Bsp143I | GATC | 3 cut(s) | 346, 397, 843 |
| Bsp68I | TCGCGA | 1 cut(s) | 874 |
| BspACI | CCGC | 9 cut(s) | 58, 106, 109, 131, 156, 609, 657, 751, 812 |
| BspANI | GGCC | 2 cut(s) | 660, 683 |
| BspCNI | CTCAG | 2 cut(s) | 520, 607 |
| BspFNI | CGCG | 2 cut(s) | 812, 874 |
| BspMAI | CTGCAG | 2 cut(s) | 124, 152 |
| BspPI | GGATC | 1 cut(s) | 354 |
| BspQI | GCTCTTC | 1 cut(s) | 810 |
| BspTNI | GGTCTC | 1 cut(s) | 232 |
| BsrBI | CCGCTC | 1 cut(s) | 751 |
| BsrDI | GCAATG | 1 cut(s) | 170 |
| BsrGI | TGTACA | 1 cut(s) | 244 |
| BssECI | CCNNGG | 4 cut(s) | 311, 387, 439, 726 |
| BssMI | GATC | 3 cut(s) | 346, 397, 843 |
| BssSI | CACGAG | 2 cut(s) | 10, 504 |
| BssT1I | CCWWGG | 1 cut(s) | 311 |
| Bst2BI | CACGAG | 2 cut(s) | 10, 504 |
| Bst4CI | ACNGT | 4 cut(s) | 94, 443, 479, 515 |
| Bst6I | CTCTTC | 1 cut(s) | 810 |
| BstAUI | TGTACA | 1 cut(s) | 244 |
| BstBAI | YACGTR | 1 cut(s) | 903 |
| BstC8I | GCNNGC | 7 cut(s) | 62, 166, 448, 452, 456, 609, 756 |
| BstDEI | CTNAG | 3 cut(s) | 368, 528, 615 |
| BstDSI | CCRYGG | 2 cut(s) | 387, 439 |
| BstF5I | GGATG | 2 cut(s) | 175, 801 |
| BstFNI | CGCG | 2 cut(s) | 812, 874 |
| BstHHI | GCGC | 1 cut(s) | 460 |
| BstKTI | GATC | 3 cut(s) | 349, 400, 846 |
| BstMAI | GTCTC | 2 cut(s) | 92, 232 |
| BstMBI | GATC | 3 cut(s) | 346, 397, 843 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 147, 150, 671, 680, 826, 880 |
| BstNSI | RCATGY | 2 cut(s) | 168, 580 |
| BstSCI | CCNGG | 1 cut(s) | 726 |
| BstSFI | CTRYAG | 2 cut(s) | 120, 148 |
| BstSLI | GKGCMC | 1 cut(s) | 717 |
| BstSNI | TACGTA | 1 cut(s) | 903 |
| BstUI | CGCG | 2 cut(s) | 812, 874 |
| BstV1I | GCAGC | 7 cut(s) | 98, 128, 134, 145, 148, 162, 766 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 446 |
| BsuRI | GGCC | 2 cut(s) | 660, 683 |
| BtgI | CCRYGG | 2 cut(s) | 387, 439 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 175, 801 |
| BtsI | GCAGTG | 2 cut(s) | 669, 848 |
| BtsIMutI | CAGTG | 2 cut(s) | 669, 848 |
| BtuMI | TCGCGA | 1 cut(s) | 874 |
| Cac8I | GCNNGC | 7 cut(s) | 62, 166, 448, 452, 456, 609, 756 |
| CfoI | GCGC | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 1 cut(s) | 659 |
| CseI | GACGC | 1 cut(s) | 809 |
| Csp6I | GTAC | 2 cut(s) | 245, 904 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 376, 411 |
| CviAII | CATG | 6 cut(s) | 165, 207, 518, 577, 635, 685 |
| CviQI | GTAC | 2 cut(s) | 245, 904 |
| DdeI | CTNAG | 3 cut(s) | 368, 528, 615 |
| DpnI | GATC | 3 cut(s) | 348, 399, 845 |
| DpnII | GATC | 3 cut(s) | 346, 397, 843 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 703 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 703 |
| EaeI | YGGCCR | 1 cut(s) | 681 |
| Eam1104I | CTCTTC | 1 cut(s) | 810 |
| EarI | CTCTTC | 1 cut(s) | 810 |
| Eco105I | TACGTA | 1 cut(s) | 903 |
| Eco130I | CCWWGG | 1 cut(s) | 311 |
| Eco24I | GRGCYC | 1 cut(s) | 17 |
| Eco31I | GGTCTC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| EcoT14I | CCWWGG | 1 cut(s) | 311 |
| EcoT38I | GRGCYC | 1 cut(s) | 17 |
| ErhI | CCWWGG | 1 cut(s) | 311 |
| FaeI | CATG | 6 cut(s) | 168, 210, 521, 580, 638, 688 |
| FaqI | GGGAC | 2 cut(s) | 709, 900 |
| FatI | CATG | 6 cut(s) | 164, 206, 517, 576, 634, 684 |
| FauI | CCCGC | 1 cut(s) | 616 |
| FbaI | TGATCA | 1 cut(s) | 397 |
| FokI | GGATG | 2 cut(s) | 162, 808 |
| FriOI | GRGCYC | 1 cut(s) | 17 |
| FspBI | CTAG | 5 cut(s) | 68, 78, 189, 312, 916 |
| FspI | TGCGCA | 1 cut(s) | 459 |
| GlaI | GCGC | 1 cut(s) | 459 |
| HaeIII | GGCC | 2 cut(s) | 660, 683 |
| HapII | CCGG | 1 cut(s) | 728 |
| HgaI | GACGC | 1 cut(s) | 809 |
| HhaI | GCGC | 1 cut(s) | 460 |
| Hin1II | CATG | 6 cut(s) | 168, 210, 521, 580, 638, 688 |
| Hin6I | GCGC | 1 cut(s) | 458 |
| HinP1I | GCGC | 1 cut(s) | 458 |
| HincII | GTYRAC | 1 cut(s) | 582 |
| HindII | GTYRAC | 1 cut(s) | 582 |
| HinfI | GANTC | 6 cut(s) | 100, 228, 278, 305, 419, 704 |
| HpaII | CCGG | 1 cut(s) | 728 |
| HphI | GGTGA | 4 cut(s) | 79, 95, 209, 561 |
| Hpy166II | GTNNAC | 3 cut(s) | 247, 387, 582 |
| Hpy188I | TCNGA | 4 cut(s) | 272, 288, 426, 529 |
| Hpy188III | TCNNGA | 3 cut(s) | 401, 860, 873 |
| Hpy8I | GTNNAC | 3 cut(s) | 247, 387, 582 |
| Hpy99I | CGWCG | 3 cut(s) | 54, 626, 825 |
| HpyAV | CCTTC | 2 cut(s) | 189, 819 |
| HpyCH4III | ACNGT | 4 cut(s) | 94, 443, 479, 515 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 902 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 147, 150, 671, 680, 826, 880 |
| HpyF3I | CTNAG | 3 cut(s) | 368, 528, 615 |
| HpySE526I | ACGT | 2 cut(s) | 135, 902 |
| Hsp92II | CATG | 6 cut(s) | 168, 210, 521, 580, 638, 688 |
| HspAI | GCGC | 1 cut(s) | 458 |
| Ksp22I | TGATCA | 1 cut(s) | 397 |
| Kzo9I | GATC | 3 cut(s) | 346, 397, 843 |
| LguI | GCTCTTC | 1 cut(s) | 810 |
| LmnI | GCTCC | 3 cut(s) | 262, 289, 748 |
| Lsp1109I | GCAGC | 7 cut(s) | 98, 128, 134, 145, 148, 162, 766 |
| LweI | GCATC | 1 cut(s) | 184 |
| MaeI | CTAG | 5 cut(s) | 68, 78, 189, 312, 916 |
| MaeII | ACGT | 2 cut(s) | 135, 902 |
| MalI | GATC | 3 cut(s) | 348, 399, 845 |
| MbiI | CCGCTC | 1 cut(s) | 751 |
| MboI | GATC | 3 cut(s) | 346, 397, 843 |
| MboII | GAAGA | 3 cut(s) | 38, 623, 827 |
| MhlI | GDGCHC | 3 cut(s) | 17, 378, 717 |
| MlsI | TGGCCA | 1 cut(s) | 683 |
| MluCI | AATT | 2 cut(s) | 251, 289 |
| MluNI | TGGCCA | 1 cut(s) | 683 |
| MlyI | GAGTC | 3 cut(s) | 94, 237, 713 |
| Mox20I | TGGCCA | 1 cut(s) | 683 |
| MroXI | GAANNNNTTC | 2 cut(s) | 45, 630 |
| MscI | TGGCCA | 1 cut(s) | 683 |
| MslI | CAYNNNNRTG | 2 cut(s) | 504, 774 |
| Msp20I | TGGCCA | 1 cut(s) | 683 |
| MspA1I | CMGCKG | 2 cut(s) | 111, 158 |
| MspI | CCGG | 1 cut(s) | 728 |
| MspR9I | CCNGG | 1 cut(s) | 728 |
| Mva1269I | GAATGC | 1 cut(s) | 739 |
| MvnI | CGCG | 2 cut(s) | 812, 874 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 147, 150, 671, 680, 826, 880 |
| NciI | CCSGG | 1 cut(s) | 728 |
| NdeII | GATC | 3 cut(s) | 346, 397, 843 |
| NlaIII | CATG | 6 cut(s) | 168, 210, 521, 580, 638, 688 |
| NruI | TCGCGA | 1 cut(s) | 874 |
| NsbI | TGCGCA | 1 cut(s) | 459 |
| NspI | RCATGY | 2 cut(s) | 168, 580 |
| OliI | CACNNNNGTG | 1 cut(s) | 504 |
| PaeI | GCATGC | 1 cut(s) | 168 |
| PciI | ACATGT | 1 cut(s) | 576 |
| PciSI | GCTCTTC | 1 cut(s) | 810 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 739 |
| PdmI | GAANNNNTTC | 2 cut(s) | 45, 630 |
| PfeI | GAWTC | 3 cut(s) | 278, 305, 419 |
| PleI | GAGTC | 3 cut(s) | 94, 236, 712 |
| PpsI | GAGTC | 3 cut(s) | 94, 236, 712 |
| Ppu21I | YACGTR | 1 cut(s) | 903 |
| PscI | ACATGT | 1 cut(s) | 576 |
| PspPI | GGNCC | 1 cut(s) | 659 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 525, 557 |
| PstI | CTGCAG | 2 cut(s) | 124, 152 |
| RruI | TCGCGA | 1 cut(s) | 874 |
| RsaI | GTAC | 2 cut(s) | 246, 905 |
| RsaNI | GTAC | 2 cut(s) | 245, 904 |
| RseI | CAYNNNNRTG | 2 cut(s) | 504, 774 |
| SapI | GCTCTTC | 1 cut(s) | 810 |
| Sau3AI | GATC | 3 cut(s) | 346, 397, 843 |
| Sau96I | GGNCC | 1 cut(s) | 659 |
| SchI | GAGTC | 3 cut(s) | 94, 237, 713 |
| ScrFI | CCNGG | 1 cut(s) | 728 |
| SduI | GDGCHC | 3 cut(s) | 17, 378, 717 |
| SfaNI | GCATC | 1 cut(s) | 184 |
| SfcI | CTRYAG | 2 cut(s) | 120, 148 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 504, 774 |
| SnaBI | TACGTA | 1 cut(s) | 903 |
| SphI | GCATGC | 1 cut(s) | 168 |
| Sse9I | AATT | 2 cut(s) | 251, 289 |
| SsiI | CCGC | 9 cut(s) | 58, 106, 109, 131, 156, 609, 657, 751, 812 |
| SspMI | CTAG | 5 cut(s) | 68, 78, 189, 312, 916 |
| StyD4I | CCNGG | 1 cut(s) | 726 |
| StyI | CCWWGG | 1 cut(s) | 311 |
| TaaI | ACNGT | 4 cut(s) | 94, 443, 479, 515 |
| TaiI | ACGT | 2 cut(s) | 138, 905 |
| TaqI | TCGA | 3 cut(s) | 349, 823, 842 |
| TasI | AATT | 2 cut(s) | 251, 289 |
| TatI | WGTACW | 1 cut(s) | 244 |
| TauI | GCSGC | 4 cut(s) | 111, 133, 660, 754 |
| TfiI | GAWTC | 3 cut(s) | 278, 305, 419 |
| TscAI | CASTG | 2 cut(s) | 676, 855 |
| TseI | GCWGC | 7 cut(s) | 111, 122, 141, 150, 158, 161, 779 |
| TspDTI | ATGAA | 3 cut(s) | 195, 623, 804 |
| TspRI | CASTG | 2 cut(s) | 676, 855 |
| XapI | RAATTY | 1 cut(s) | 289 |
| XceI | RCATGY | 2 cut(s) | 168, 580 |
| XmaJI | CCTAGG | 1 cut(s) | 311 |
| XmnI | GAANNNNTTC | 2 cut(s) | 45, 630 |
| XspI | CTAG | 5 cut(s) | 68, 78, 189, 312, 916 |