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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 13 |
| AccII | CGCG | 3 cut(s) | 128, 320, 544 |
| AciI | CCGC | 4 cut(s) | 126, 216, 869, 915 |
| AclWI | GGATC | 1 cut(s) | 149 |
| AcoI | YGGCCR | 1 cut(s) | 123 |
| AfaI | GTAC | 2 cut(s) | 803, 848 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 13, 493, 894 |
| AgsI | TTSAA | 4 cut(s) | 224, 262, 721, 819 |
| AjnI | CCWGG | 2 cut(s) | 103, 189 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 299, 331 |
| AluBI | AGCT | 5 cut(s) | 22, 243, 424, 609, 901 |
| AluI | AGCT | 5 cut(s) | 22, 243, 424, 609, 901 |
| Alw21I | GWGCWC | 2 cut(s) | 245, 780 |
| Alw26I | GTCTC | 4 cut(s) | 56, 217, 476, 669 |
| AlwI | GGATC | 1 cut(s) | 149 |
| Ama87I | CYCGRG | 1 cut(s) | 456 |
| AoxI | GGCC | 3 cut(s) | 123, 448, 921 |
| ApeKI | GCWGC | 3 cut(s) | 740, 901, 904 |
| AspS9I | GGNCC | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 3 cut(s) | 295, 397, 627 |
| AvaI | CYCGRG | 1 cut(s) | 456 |
| AvaII | GGWCC | 1 cut(s) | 401 |
| AxyI | CCTNAGG | 1 cut(s) | 701 |
| BanII | GRGCYC | 4 cut(s) | 245, 635, 665, 769 |
| BbsI | GAAGAC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 2 cut(s) | 245, 780 |
| BbvI | GCAGC | 3 cut(s) | 752, 888, 916 |
| BccI | CCATC | 4 cut(s) | 329, 376, 646, 836 |
| BciT130I | CCWGG | 2 cut(s) | 105, 191 |
| BcoDI | GTCTC | 4 cut(s) | 56, 217, 476, 669 |
| BfaI | CTAG | 1 cut(s) | 72 |
| BfmI | CTRYAG | 3 cut(s) | 294, 738, 902 |
| BisI | GCNGC | 4 cut(s) | 126, 741, 902, 905 |
| BlpI | GCTNAGC | 1 cut(s) | 244 |
| BlsI | GCNGC | 4 cut(s) | 127, 742, 903, 906 |
| Bme1390I | CCNGG | 2 cut(s) | 105, 191 |
| Bme18I | GGWCC | 1 cut(s) | 401 |
| BmeT110I | CYCGRG | 1 cut(s) | 456 |
| BmgT120I | GGNCC | 1 cut(s) | 401 |
| BmrFI | CCNGG | 2 cut(s) | 105, 191 |
| BmsI | GCATC | 7 cut(s) | 29, 58, 58, 92, 121, 536, 573 |
| BoxI | GACNNNNGTC | 1 cut(s) | 505 |
| BpiI | GAAGAC | 1 cut(s) | 395 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 244 |
| BpuEI | CTTGAG | 2 cut(s) | 236, 272 |
| BsaI | GGTCTC | 1 cut(s) | 476 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 13, 493, 894 |
| Bse118I | RCCGGY | 1 cut(s) | 655 |
| Bse1I | ACTGG | 1 cut(s) | 7 |
| Bse21I | CCTNAGG | 1 cut(s) | 701 |
| BseBI | CCWGG | 2 cut(s) | 105, 191 |
| BseGI | GGATG | 5 cut(s) | 44, 83, 484, 564, 695 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 13, 493, 894 |
| BseMII | CTCAG | 3 cut(s) | 70, 258, 303 |
| BseNI | ACTGG | 1 cut(s) | 7 |
| BseRI | GAGGAG | 2 cut(s) | 44, 215 |
| BseXI | GCAGC | 3 cut(s) | 752, 888, 916 |
| Bsh1236I | CGCG | 3 cut(s) | 128, 320, 544 |
| BshFI | GGCC | 3 cut(s) | 125, 450, 923 |
| BsiHKAI | GWGCWC | 2 cut(s) | 245, 780 |
| BsiHKCI | CYCGRG | 1 cut(s) | 456 |
| BsiSI | CCGG | 1 cut(s) | 656 |
| BslFI | GGGAC | 2 cut(s) | 106, 719 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 13, 493, 894 |
| BsmAI | GTCTC | 4 cut(s) | 56, 217, 476, 669 |
| BsmFI | GGGAC | 2 cut(s) | 106, 719 |
| BsnI | GGCC | 3 cut(s) | 125, 450, 923 |
| Bso31I | GGTCTC | 1 cut(s) | 476 |
| BsoBI | CYCGRG | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 5 cut(s) | 245, 635, 665, 769, 780 |
| Bsp143I | GATC | 4 cut(s) | 3, 154, 369, 418 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 244 |
| Bsp68I | TCGCGA | 2 cut(s) | 320, 544 |
| BspACI | CCGC | 4 cut(s) | 126, 216, 869, 915 |
| BspANI | GGCC | 3 cut(s) | 125, 450, 923 |
| BspCNI | CTCAG | 3 cut(s) | 69, 257, 304 |
| BspFNI | CGCG | 3 cut(s) | 128, 320, 544 |
| BspMAI | CTGCAG | 2 cut(s) | 742, 906 |
| BspPI | GGATC | 1 cut(s) | 149 |
| BspQI | GCTCTTC | 1 cut(s) | 233 |
| BspTNI | GGTCTC | 1 cut(s) | 476 |
| BsrFI | RCCGGY | 1 cut(s) | 655 |
| BsrI | ACTGG | 1 cut(s) | 7 |
| BssAI | RCCGGY | 1 cut(s) | 655 |
| BssMI | GATC | 4 cut(s) | 3, 154, 369, 418 |
| Bst2UI | CCWGG | 2 cut(s) | 105, 191 |
| Bst6I | CTCTTC | 4 cut(s) | 174, 192, 233, 456 |
| BstC8I | GCNNGC | 2 cut(s) | 542, 661 |
| BstDEI | CTNAG | 6 cut(s) | 56, 244, 270, 312, 504, 701 |
| BstF5I | GGATG | 5 cut(s) | 44, 83, 484, 564, 695 |
| BstFNI | CGCG | 3 cut(s) | 128, 320, 544 |
| BstKTI | GATC | 4 cut(s) | 6, 157, 372, 421 |
| BstMAI | GTCTC | 4 cut(s) | 56, 217, 476, 669 |
| BstMBI | GATC | 4 cut(s) | 3, 154, 369, 418 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 139, 546, 740 |
| BstNI | CCWGG | 2 cut(s) | 105, 191 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 505 |
| BstSCI | CCNGG | 2 cut(s) | 103, 189 |
| BstSFI | CTRYAG | 3 cut(s) | 294, 738, 902 |
| BstUI | CGCG | 3 cut(s) | 128, 320, 544 |
| BstV1I | GCAGC | 3 cut(s) | 752, 888, 916 |
| BstV2I | GAAGAC | 1 cut(s) | 395 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 627 |
| Bsu36I | CCTNAGG | 1 cut(s) | 701 |
| BsuRI | GGCC | 3 cut(s) | 125, 450, 923 |
| BtgZI | GCGATG | 1 cut(s) | 559 |
| BtsCI | GGATG | 5 cut(s) | 44, 83, 484, 564, 695 |
| BtuMI | TCGCGA | 2 cut(s) | 320, 544 |
| Cac8I | GCNNGC | 2 cut(s) | 542, 661 |
| Cfr10I | RCCGGY | 1 cut(s) | 655 |
| Cfr13I | GGNCC | 1 cut(s) | 401 |
| Csp6I | GTAC | 2 cut(s) | 802, 847 |
| CviAII | CATG | 3 cut(s) | 350, 578, 679 |
| CviQI | GTAC | 2 cut(s) | 802, 847 |
| DdeI | CTNAG | 6 cut(s) | 56, 244, 270, 312, 504, 701 |
| DpnI | GATC | 4 cut(s) | 5, 156, 371, 420 |
| DpnII | GATC | 4 cut(s) | 3, 154, 369, 418 |
| EaeI | YGGCCR | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 4 cut(s) | 174, 192, 233, 456 |
| EarI | CTCTTC | 4 cut(s) | 174, 192, 233, 456 |
| Ecl136II | GAGCTC | 1 cut(s) | 243 |
| Eco24I | GRGCYC | 4 cut(s) | 245, 635, 665, 769 |
| Eco31I | GGTCTC | 1 cut(s) | 476 |
| Eco32I | GATATC | 1 cut(s) | 787 |
| Eco47I | GGWCC | 1 cut(s) | 401 |
| Eco53kI | GAGCTC | 1 cut(s) | 243 |
| Eco81I | CCTNAGG | 1 cut(s) | 701 |
| Eco88I | CYCGRG | 1 cut(s) | 456 |
| EcoICRI | GAGCTC | 1 cut(s) | 243 |
| EcoRII | CCWGG | 2 cut(s) | 103, 189 |
| EcoRV | GATATC | 1 cut(s) | 787 |
| EcoT22I | ATGCAT | 1 cut(s) | 85 |
| EcoT38I | GRGCYC | 4 cut(s) | 245, 635, 665, 769 |
| FaeI | CATG | 3 cut(s) | 353, 581, 682 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 380, 412 |
| FaqI | GGGAC | 2 cut(s) | 106, 719 |
| FatI | CATG | 3 cut(s) | 349, 577, 678 |
| FauNDI | CATATG | 2 cut(s) | 97, 331 |
| Fnu4HI | GCNGC | 4 cut(s) | 126, 741, 902, 905 |
| FokI | GGATG | 5 cut(s) | 51, 70, 491, 551, 682 |
| FriOI | GRGCYC | 4 cut(s) | 245, 635, 665, 769 |
| Fsp4HI | GCNGC | 4 cut(s) | 126, 741, 902, 905 |
| FspBI | CTAG | 1 cut(s) | 72 |
| GluI | GCNGC | 4 cut(s) | 126, 741, 902, 905 |
| HaeIII | GGCC | 3 cut(s) | 125, 450, 923 |
| HapII | CCGG | 1 cut(s) | 656 |
| Hin1II | CATG | 3 cut(s) | 353, 581, 682 |
| HincII | GTYRAC | 1 cut(s) | 690 |
| HindII | GTYRAC | 1 cut(s) | 690 |
| HinfI | GANTC | 1 cut(s) | 707 |
| HpaII | CCGG | 1 cut(s) | 656 |
| HphI | GGTGA | 3 cut(s) | 295, 397, 627 |
| Hpy166II | GTNNAC | 2 cut(s) | 690, 849 |
| Hpy188I | TCNGA | 3 cut(s) | 59, 401, 771 |
| Hpy188III | TCNNGA | 6 cut(s) | 319, 376, 543, 642, 721, 790 |
| Hpy8I | GTNNAC | 2 cut(s) | 690, 849 |
| Hpy99I | CGWCG | 1 cut(s) | 377 |
| HpyAV | CCTTC | 6 cut(s) | 310, 440, 467, 822, 830, 903 |
| HpyCH4IV | ACGT | 2 cut(s) | 692, 821 |
| HpyCH4V | TGCA | 7 cut(s) | 83, 101, 133, 491, 549, 740, 904 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 139, 546, 740 |
| HpyF3I | CTNAG | 6 cut(s) | 56, 244, 270, 312, 504, 701 |
| HpySE526I | ACGT | 2 cut(s) | 692, 821 |
| Hsp92II | CATG | 3 cut(s) | 353, 581, 682 |
| Kzo9I | GATC | 4 cut(s) | 3, 154, 369, 418 |
| LguI | GCTCTTC | 1 cut(s) | 233 |
| Lsp1109I | GCAGC | 3 cut(s) | 752, 888, 916 |
| LweI | GCATC | 7 cut(s) | 29, 58, 58, 92, 121, 536, 573 |
| MaeI | CTAG | 1 cut(s) | 72 |
| MaeII | ACGT | 2 cut(s) | 692, 821 |
| MalI | GATC | 4 cut(s) | 5, 156, 371, 420 |
| MboI | GATC | 4 cut(s) | 3, 154, 369, 418 |
| MfeI | CAATTG | 1 cut(s) | 257 |
| MhlI | GDGCHC | 5 cut(s) | 245, 635, 665, 769, 780 |
| MluCI | AATT | 1 cut(s) | 257 |
| MlyI | GAGTC | 1 cut(s) | 701 |
| MmeI | TCCRAC | 1 cut(s) | 735 |
| Mph1103I | ATGCAT | 1 cut(s) | 85 |
| MslI | CAYNNNNRTG | 1 cut(s) | 569 |
| MspA1I | CMGCKG | 1 cut(s) | 424 |
| MspI | CCGG | 1 cut(s) | 656 |
| MspR9I | CCNGG | 2 cut(s) | 105, 191 |
| MunI | CAATTG | 1 cut(s) | 257 |
| MvaI | CCWGG | 2 cut(s) | 105, 191 |
| MvnI | CGCG | 3 cut(s) | 128, 320, 544 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 139, 546, 740 |
| NdeI | CATATG | 2 cut(s) | 97, 331 |
| NdeII | GATC | 4 cut(s) | 3, 154, 369, 418 |
| NlaIII | CATG | 3 cut(s) | 353, 581, 682 |
| NruI | TCGCGA | 2 cut(s) | 320, 544 |
| NsiI | ATGCAT | 1 cut(s) | 85 |
| PciSI | GCTCTTC | 1 cut(s) | 233 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 13 |
| PkrI | GCNGC | 4 cut(s) | 127, 742, 903, 906 |
| PleI | GAGTC | 1 cut(s) | 701 |
| PpsI | GAGTC | 1 cut(s) | 701 |
| PshAI | GACNNNNGTC | 1 cut(s) | 505 |
| Psp124BI | GAGCTC | 1 cut(s) | 245 |
| Psp6I | CCWGG | 2 cut(s) | 103, 189 |
| PspGI | CCWGG | 2 cut(s) | 103, 189 |
| PspPI | GGNCC | 1 cut(s) | 401 |
| PstI | CTGCAG | 2 cut(s) | 742, 906 |
| PvuII | CAGCTG | 1 cut(s) | 424 |
| RruI | TCGCGA | 2 cut(s) | 320, 544 |
| RsaI | GTAC | 2 cut(s) | 803, 848 |
| RsaNI | GTAC | 2 cut(s) | 802, 847 |
| RseI | CAYNNNNRTG | 1 cut(s) | 569 |
| SacI | GAGCTC | 1 cut(s) | 245 |
| SapI | GCTCTTC | 1 cut(s) | 233 |
| SatI | GCNGC | 4 cut(s) | 126, 741, 902, 905 |
| Sau3AI | GATC | 4 cut(s) | 3, 154, 369, 418 |
| Sau96I | GGNCC | 1 cut(s) | 401 |
| SchI | GAGTC | 1 cut(s) | 701 |
| ScrFI | CCNGG | 2 cut(s) | 105, 191 |
| SduI | GDGCHC | 5 cut(s) | 245, 635, 665, 769, 780 |
| SfaNI | GCATC | 7 cut(s) | 29, 58, 58, 92, 121, 536, 573 |
| SfcI | CTRYAG | 3 cut(s) | 294, 738, 902 |
| SinI | GGWCC | 1 cut(s) | 401 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 569 |
| SmlI | CTYRAG | 2 cut(s) | 251, 287 |
| SmoI | CTYRAG | 2 cut(s) | 251, 287 |
| Sse9I | AATT | 1 cut(s) | 257 |
| SsiI | CCGC | 4 cut(s) | 126, 216, 869, 915 |
| SspMI | CTAG | 1 cut(s) | 72 |
| SstI | GAGCTC | 1 cut(s) | 245 |
| StyD4I | CCNGG | 2 cut(s) | 103, 189 |
| TaiI | ACGT | 2 cut(s) | 695, 824 |
| TaqI | TCGA | 2 cut(s) | 412, 588 |
| TasI | AATT | 1 cut(s) | 257 |
| TatI | WGTACW | 1 cut(s) | 801 |
| TauI | GCSGC | 1 cut(s) | 128 |
| TseI | GCWGC | 3 cut(s) | 740, 901, 904 |
| TspDTI | ATGAA | 3 cut(s) | 590, 594, 774 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 13 |
| VpaK11BI | GGWCC | 1 cut(s) | 401 |
| XspI | CTAG | 1 cut(s) | 72 |
| Zsp2I | ATGCAT | 1 cut(s) | 85 |