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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 96 |
| Acc65I | GGTACC | 1 cut(s) | 182 |
| AccB1I | GGYRCC | 1 cut(s) | 182 |
| AccI | GTMKAC | 1 cut(s) | 42 |
| AccII | CGCG | 1 cut(s) | 77 |
| AciI | CCGC | 3 cut(s) | 59, 176, 209 |
| AclWI | GGATC | 1 cut(s) | 219 |
| AcoI | YGGCCR | 2 cut(s) | 155, 177 |
| AfaI | GTAC | 2 cut(s) | 184, 344 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 123, 164, 186, 314 |
| AgsI | TTSAA | 1 cut(s) | 330 |
| AjnI | CCWGG | 1 cut(s) | 267 |
| AluBI | AGCT | 2 cut(s) | 284, 376 |
| AluI | AGCT | 2 cut(s) | 284, 376 |
| AlwI | GGATC | 1 cut(s) | 219 |
| Ama87I | CYCGRG | 2 cut(s) | 232, 371 |
| AoxI | GGCC | 4 cut(s) | 8, 24, 155, 177 |
| ApaI | GGGCCC | 1 cut(s) | 28 |
| ApeKI | GCWGC | 2 cut(s) | 238, 281 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 325 |
| Asp718I | GGTACC | 1 cut(s) | 182 |
| AspA2I | CCTAGG | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AspS9I | GGNCC | 4 cut(s) | 8, 24, 25, 50 |
| AsuC2I | CCSGG | 1 cut(s) | 187 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| AvaI | CYCGRG | 2 cut(s) | 232, 371 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| AvrII | CCTAGG | 1 cut(s) | 20 |
| BaeGI | GKGCMC | 1 cut(s) | 28 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 326, 359 |
| BanI | GGYRCC | 1 cut(s) | 182 |
| BanII | GRGCYC | 1 cut(s) | 28 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| BbvI | GCAGC | 2 cut(s) | 225, 293 |
| BccI | CCATC | 2 cut(s) | 29, 242 |
| BceAI | ACGGC | 1 cut(s) | 142 |
| BciT130I | CCWGG | 1 cut(s) | 269 |
| BcnI | CCSGG | 1 cut(s) | 187 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BisI | GCNGC | 3 cut(s) | 177, 239, 282 |
| BlnI | CCTAGG | 1 cut(s) | 20 |
| BlsI | GCNGC | 3 cut(s) | 178, 240, 283 |
| Bme1390I | CCNGG | 2 cut(s) | 187, 269 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmeT110I | CYCGRG | 2 cut(s) | 232, 371 |
| BmgT120I | GGNCC | 4 cut(s) | 8, 24, 25, 50 |
| BmiI | GGNNCC | 3 cut(s) | 26, 51, 184 |
| BmrFI | CCNGG | 2 cut(s) | 187, 269 |
| BmsI | GCATC | 1 cut(s) | 300 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| BpuEI | CTTGAG | 1 cut(s) | 187 |
| BpuMI | CCSGG | 1 cut(s) | 187 |
| BsaJI | CCNNGG | 1 cut(s) | 20 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 123, 164, 186, 314 |
| Bse118I | RCCGGY | 3 cut(s) | 10, 179, 382 |
| Bse3DI | GCAATG | 1 cut(s) | 178 |
| BseBI | CCWGG | 1 cut(s) | 269 |
| BseDI | CCNNGG | 1 cut(s) | 20 |
| BseGI | GGATG | 3 cut(s) | 40, 195, 439 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 123, 164, 186, 314 |
| BseMI | GCAATG | 1 cut(s) | 178 |
| BseRI | GAGGAG | 1 cut(s) | 286 |
| BseSI | GKGCMC | 1 cut(s) | 28 |
| BseX3I | CGGCCG | 1 cut(s) | 177 |
| BseXI | GCAGC | 2 cut(s) | 225, 293 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| Bsh1285I | CGRYCG | 1 cut(s) | 180 |
| BshFI | GGCC | 4 cut(s) | 10, 26, 157, 179 |
| BshNI | GGYRCC | 1 cut(s) | 182 |
| BsiEI | CGRYCG | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 2 cut(s) | 232, 371 |
| BsiSI | CCGG | 4 cut(s) | 11, 180, 186, 383 |
| BslFI | GGGAC | 2 cut(s) | 63, 348 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 123, 164, 186, 314 |
| BsmFI | GGGAC | 2 cut(s) | 63, 348 |
| BsnI | GGCC | 4 cut(s) | 10, 26, 157, 179 |
| BsoBI | CYCGRG | 2 cut(s) | 232, 371 |
| Bsp120I | GGGCCC | 1 cut(s) | 24 |
| Bsp1286I | GDGCHC | 1 cut(s) | 28 |
| Bsp143I | GATC | 2 cut(s) | 3, 211 |
| BspACI | CCGC | 3 cut(s) | 59, 176, 209 |
| BspANI | GGCC | 4 cut(s) | 10, 26, 157, 179 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspLI | GGNNCC | 3 cut(s) | 26, 51, 184 |
| BspPI | GGATC | 1 cut(s) | 219 |
| BspT107I | GGYRCC | 1 cut(s) | 182 |
| BsrDI | GCAATG | 1 cut(s) | 178 |
| BsrFI | RCCGGY | 3 cut(s) | 10, 179, 382 |
| BssAI | RCCGGY | 3 cut(s) | 10, 179, 382 |
| BssECI | CCNNGG | 1 cut(s) | 20 |
| BssMI | GATC | 2 cut(s) | 3, 211 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2UI | CCWGG | 1 cut(s) | 269 |
| Bst4CI | ACNGT | 4 cut(s) | 276, 362, 407, 416 |
| Bst6I | CTCTTC | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 75 |
| BstF5I | GGATG | 3 cut(s) | 40, 195, 439 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstKTI | GATC | 2 cut(s) | 6, 214 |
| BstMBI | GATC | 2 cut(s) | 3, 211 |
| BstMCI | CGRYCG | 1 cut(s) | 180 |
| BstNI | CCWGG | 1 cut(s) | 269 |
| BstSCI | CCNGG | 2 cut(s) | 185, 267 |
| BstSLI | GKGCMC | 1 cut(s) | 28 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV1I | GCAGC | 2 cut(s) | 225, 293 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 35 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BstZI | CGGCCG | 1 cut(s) | 177 |
| BsuRI | GGCC | 4 cut(s) | 10, 26, 157, 179 |
| BtgZI | GCGATG | 1 cut(s) | 339 |
| BtsCI | GGATG | 3 cut(s) | 40, 195, 439 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 75 |
| CfoI | GCGC | 1 cut(s) | 79 |
| Cfr10I | RCCGGY | 3 cut(s) | 10, 179, 382 |
| Cfr13I | GGNCC | 4 cut(s) | 8, 24, 25, 50 |
| CseI | GACGC | 1 cut(s) | 319 |
| Csp6I | GTAC | 2 cut(s) | 183, 343 |
| CviJI | RGCY | 9 cut(s) | 10, 14, 26, 157, 179, 238, 284, 376, 386 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 14, 26, 157, 179, 238, 284, 376, 386 |
| CviQI | GTAC | 2 cut(s) | 183, 343 |
| DpnI | GATC | 2 cut(s) | 5, 213 |
| DpnII | GATC | 2 cut(s) | 3, 211 |
| EaeI | YGGCCR | 2 cut(s) | 155, 177 |
| EagI | CGGCCG | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 414 |
| EarI | CTCTTC | 1 cut(s) | 414 |
| EclXI | CGGCCG | 1 cut(s) | 177 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco24I | GRGCYC | 1 cut(s) | 28 |
| Eco32I | GATATC | 1 cut(s) | 198 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco52I | CGGCCG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 2 cut(s) | 232, 371 |
| EcoO109I | RGGNCCY | 2 cut(s) | 24, 50 |
| EcoRII | CCWGG | 1 cut(s) | 267 |
| EcoRV | GATATC | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| EcoT38I | GRGCYC | 1 cut(s) | 28 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaiI | YATR | 8 cut(s) | 66, 68, 96, 107, 325, 339, 341, 393 |
| FaqI | GGGAC | 2 cut(s) | 63, 348 |
| FauI | CCCGC | 1 cut(s) | 66 |
| FauNDI | CATATG | 1 cut(s) | 339 |
| FblI | GTMKAC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 239, 282 |
| FokI | GGATG | 2 cut(s) | 47, 202 |
| FriOI | GRGCYC | 1 cut(s) | 28 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 239, 282 |
| FspBI | CTAG | 1 cut(s) | 21 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GluI | GCNGC | 3 cut(s) | 177, 239, 282 |
| HaeIII | GGCC | 4 cut(s) | 10, 26, 157, 179 |
| HapII | CCGG | 4 cut(s) | 11, 180, 186, 383 |
| HgaI | GACGC | 1 cut(s) | 319 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HpaII | CCGG | 4 cut(s) | 11, 180, 186, 383 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy166II | GTNNAC | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 1 cut(s) | 431 |
| Hpy8I | GTNNAC | 1 cut(s) | 43 |
| Hpy99I | CGWCG | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 4 cut(s) | 276, 362, 407, 416 |
| HpyCH4V | TGCA | 2 cut(s) | 171, 241 |
| HspAI | GCGC | 1 cut(s) | 77 |
| KpnI | GGTACC | 1 cut(s) | 186 |
| KroI | GCCGGC | 1 cut(s) | 10 |
| KroNI | GCCGGC | 1 cut(s) | 12 |
| Kzo9I | GATC | 2 cut(s) | 3, 211 |
| LpnPI | CCDG | 8 cut(s) | 24, 99, 193, 199, 254, 281, 359, 396 |
| Lsp1109I | GCAGC | 2 cut(s) | 225, 293 |
| LweI | GCATC | 1 cut(s) | 300 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MalI | GATC | 2 cut(s) | 5, 213 |
| MboI | GATC | 2 cut(s) | 3, 211 |
| MboII | GAAGA | 3 cut(s) | 139, 330, 431 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MhlI | GDGCHC | 1 cut(s) | 28 |
| MnlI | CCTC | 3 cut(s) | 40, 211, 307 |
| MroNI | GCCGGC | 1 cut(s) | 10 |
| MroXI | GAANNNNTTC | 1 cut(s) | 325 |
| MslI | CAYNNNNRTG | 2 cut(s) | 246, 414 |
| MspI | CCGG | 4 cut(s) | 11, 180, 186, 383 |
| MspR9I | CCNGG | 2 cut(s) | 187, 269 |
| MvaI | CCWGG | 1 cut(s) | 269 |
| MvnI | CGCG | 1 cut(s) | 77 |
| NaeI | GCCGGC | 1 cut(s) | 12 |
| NciI | CCSGG | 1 cut(s) | 187 |
| NdeI | CATATG | 1 cut(s) | 339 |
| NdeII | GATC | 2 cut(s) | 3, 211 |
| NgoMIV | GCCGGC | 1 cut(s) | 10 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 51, 184 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 305 |
| PdiI | GCCGGC | 1 cut(s) | 12 |
| PdmI | GAANNNNTTC | 1 cut(s) | 325 |
| PkrI | GCNGC | 3 cut(s) | 178, 240, 283 |
| PpuMI | RGGWCCY | 1 cut(s) | 50 |
| PsiI | TTATAA | 1 cut(s) | 96 |
| Psp5II | RGGWCCY | 1 cut(s) | 50 |
| Psp6I | CCWGG | 1 cut(s) | 267 |
| PspGI | CCWGG | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 51, 184 |
| PspOMI | GGGCCC | 1 cut(s) | 24 |
| PspPI | GGNCC | 4 cut(s) | 8, 24, 25, 50 |
| PspPPI | RGGWCCY | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RsaI | GTAC | 2 cut(s) | 184, 344 |
| RsaNI | GTAC | 2 cut(s) | 183, 343 |
| RseI | CAYNNNNRTG | 2 cut(s) | 246, 414 |
| SatI | GCNGC | 3 cut(s) | 177, 239, 282 |
| Sau3AI | GATC | 2 cut(s) | 3, 211 |
| Sau96I | GGNCC | 4 cut(s) | 8, 24, 25, 50 |
| ScrFI | CCNGG | 2 cut(s) | 187, 269 |
| SduI | GDGCHC | 1 cut(s) | 28 |
| SetI | ASST | 4 cut(s) | 55, 119, 286, 378 |
| SfaNI | GCATC | 1 cut(s) | 300 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 246, 414 |
| SmlI | CTYRAG | 1 cut(s) | 202 |
| SmoI | CTYRAG | 1 cut(s) | 202 |
| SsiI | CCGC | 3 cut(s) | 59, 176, 209 |
| SspMI | CTAG | 1 cut(s) | 21 |
| StyD4I | CCNGG | 2 cut(s) | 185, 267 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 4 cut(s) | 276, 362, 407, 416 |
| TauI | GCSGC | 1 cut(s) | 179 |
| TseI | GCWGC | 2 cut(s) | 238, 281 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XmaJI | CCTAGG | 1 cut(s) | 20 |
| XmiI | GTMKAC | 1 cut(s) | 42 |
| XmnI | GAANNNNTTC | 1 cut(s) | 325 |
| XspI | CTAG | 1 cut(s) | 21 |