Rmu_ssc0000398.1_g000003

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000398.1
OG0000057
Physical Location & Seq
Forward (+)
12290 .. 13681
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000398.1_g000003.1.cds

Sequence Viewer

Length: 1248 bp
atgtcgactggacaagatgagaatcacccgaccgctactgagggtcagagtgtcagtgttaatcaggccagcaagcctgttatccccaccactgttaacgctacagtggggaatgaagaaagagaggctttcgttcctaagcctattccagagggagtgacctctgaggtcaggttagcaatcatcatggaaaatatcgaaaaccatcgcaagaagatggacgctgattttgccagagaggccgcaaagacggataagctcatacgtgaactagatcagcgaattatcctccatgtagaggagactaggcagcagatcgcacaatcagagagtgcagtgagggaacatgccgcgagcgtcagtagcgaagaagtgttgaacgaagctttaggggatcctaatgctatccttggctctcttggccagccatcctgttcaggtaagtacgtgctgccaaatcagcgcgaaaagactaataataatattgtttctccctcagctactgttgctgctacaccgctaaagaataaagaaaaagagttgattatcggtggcagtaaagaaaagcctacctcgtcaggcggacaggctaccagacagaagcatcaggcttcaaaaggtgcaggaacttcatctgaccccgctacgttcgttcaatacgacagctacgggacagaaatggtatatcaagaactgccagggagttattacgggcttgaccagaccggcacccccatcaagataacagccttgtcaaaggaagagattaagccagcgatgactcttcagcaacaggctactacccgtgttgtgcacgtcggagaagggacggccactgtaaatcaaacgatacctgtgcaggttgctcgccagactgtggcaacaccacctcctcctccgggcccagattatgtaagacgtgatgaagtagaggagatgatcaggttagctaaccctagggcccaaccagatggggtctatgagggacctttcccgccacatatcatgctcgcaccttttccccggggatataagaatatcatattttctactttttcaggggaagatactgaagatgcggcgacacatctggccaggtttagggtacaatgcggccaataccagaacaatgatgtcctcaaatgcagaatttttggcacttctctgtcagccgctgccttcagatggttttccaagcttcgaccaggaatagtggcggattggcctgcaatggaattgctcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

415

Amino Acids

45.28

Weight (kDa)

5.74

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 728
AccB7I CCANNNNNTGG 1 cut(s) 877
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 353, 465
AclWI GGATC 2 cut(s) 389, 402
AcoI YGGCCR 4 cut(s) 421, 831, 1092, 1114
AcsI RAATTY 1 cut(s) 1149
AcuI CTGAAG 3 cut(s) 770, 1092, 1165
AfaI GTAC 2 cut(s) 446, 1107
AfiI CCNNNNNNNGG 5 cut(s) 298, 877, 899, 1101, 1185
AgsI TTSAA 3 cut(s) 379, 615, 656
AjiI CACGTC 2 cut(s) 817, 920
AjnI CCWGG 3 cut(s) 697, 1094, 1204
AluBI AGCT 6 cut(s) 259, 386, 500, 666, 950, 1198
AluI AGCT 6 cut(s) 259, 386, 500, 666, 950, 1198
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 1 cut(s) 296
Alw44I GTGCAC 1 cut(s) 812
AlwI GGATC 2 cut(s) 389, 402
AlwNI CAGNNNCTG 2 cut(s) 503, 1175
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 9 cut(s) 66, 240, 421, 831, 901, 960, 1092, 1114, 1223
ApaI GGGCCC 2 cut(s) 905, 964
ApaLI GTGCAC 1 cut(s) 812
ApeKI GCWGC 4 cut(s) 310, 451, 509, 1175
ApoI RAATTY 1 cut(s) 1149
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspA2I CCTAGG 1 cut(s) 956
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 5 cut(s) 901, 902, 960, 961, 986
AsuC2I CCSGG 3 cut(s) 900, 1024, 1025
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 1 cut(s) 986
AvrII CCTAGG 1 cut(s) 956
BaeGI GKGCMC 3 cut(s) 816, 905, 964
BalI TGGCCA 2 cut(s) 423, 1094
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 2 cut(s) 905, 964
Bbv12I GWGCWC 1 cut(s) 816
BbvCI CCTCAGC 1 cut(s) 496
BbvI GCAGC 4 cut(s) 322, 438, 496, 1162
BccI CCATC 6 cut(s) 211, 213, 436, 743, 965, 1179
BceAI ACGGC 1 cut(s) 846
BcgI CGANNNNNNTGC 4 cut(s) 838, 848, 872, 882
BciT130I CCWGG 3 cut(s) 699, 1096, 1206
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 3 cut(s) 900, 1024, 1025
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 272, 306, 957
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 9 cut(s) 243, 311, 351, 452, 510, 1080, 1114, 1173, 1176
BlnI CCTAGG 1 cut(s) 956
BlsI GCNGC 9 cut(s) 244, 312, 352, 453, 511, 1081, 1115, 1174, 1177
Bme1390I CCNGG 6 cut(s) 699, 900, 1024, 1025, 1096, 1206
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 1023
BmgBI CACGTC 2 cut(s) 817, 920
BmgT120I GGNCC 5 cut(s) 901, 902, 960, 961, 986
BmiI GGNNCC 5 cut(s) 396, 730, 903, 962, 987
BmrFI CCNGG 6 cut(s) 699, 900, 1024, 1025, 1096, 1206
BmsI GCATC 2 cut(s) 613, 1066
Bpu10I CCTNAGC 2 cut(s) 138, 496
BpuMI CCSGG 3 cut(s) 900, 1024, 1025
BsaAI YACGTR 2 cut(s) 266, 448
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 6 cut(s) 409, 698, 956, 1022, 1023, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 874, 904
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 877, 899, 1101, 1185
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 3 cut(s) 699, 1096, 1206
BseDI CCNNGG 6 cut(s) 409, 698, 956, 1022, 1023, 1024
BseGI GGATG 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 5 cut(s) 298, 877, 899, 1101, 1185
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 3 cut(s) 30, 156, 510
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 4 cut(s) 314, 882, 885, 947
BseSI GKGCMC 3 cut(s) 816, 905, 964
BseXI GCAGC 4 cut(s) 322, 438, 496, 1162
BsgI GTGCAG 3 cut(s) 354, 642, 878
Bsh1236I CGCG 2 cut(s) 353, 465
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 9 cut(s) 68, 242, 423, 833, 903, 962, 1094, 1116, 1225
BshNI GGYRCC 1 cut(s) 728
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 3 cut(s) 726, 899, 1024
BslFI GGGAC 3 cut(s) 685, 841, 999
BslI CCNNNNNNNGG 5 cut(s) 298, 877, 899, 1101, 1185
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 3 cut(s) 685, 841, 999
BsnI GGCC 9 cut(s) 68, 242, 423, 833, 903, 962, 1094, 1116, 1225
BsoBI CYCGRG 1 cut(s) 1023
Bsp120I GGGCCC 2 cut(s) 901, 960
Bsp1286I GDGCHC 3 cut(s) 816, 905, 964
Bsp143I GATC 4 cut(s) 274, 315, 394, 939
BspANI GGCC 9 cut(s) 68, 242, 423, 833, 903, 962, 1094, 1116, 1225
BspCNI CTCAG 3 cut(s) 31, 157, 509
BspFNI CGCG 2 cut(s) 353, 465
BspLI GGNNCC 5 cut(s) 396, 730, 903, 962, 987
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 2 cut(s) 389, 402
BspT107I GGYRCC 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 1236
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 6 cut(s) 409, 698, 956, 1022, 1023, 1024
BssMI GATC 4 cut(s) 274, 315, 394, 939
BssT1I CCWWGG 2 cut(s) 409, 956
Bst2UI CCWGG 3 cut(s) 699, 1096, 1206
Bst4CI ACNGT 5 cut(s) 94, 106, 505, 838, 877
Bst6I CTCTTC 2 cut(s) 756, 789
BstBAI YACGTR 2 cut(s) 266, 448
BstC8I GCNNGC 8 cut(s) 70, 74, 355, 425, 774, 868, 1011, 1227
BstDEI CTNAG 4 cut(s) 39, 138, 165, 496
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 2 cut(s) 353, 465
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 4 cut(s) 277, 318, 397, 942
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 274, 315, 394, 939
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 6 cut(s) 230, 239, 363, 420, 460, 506
BstNI CCWGG 3 cut(s) 699, 1096, 1206
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 697, 898, 1022, 1023, 1094, 1204
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 3 cut(s) 816, 905, 964
BstUI CGCG 2 cut(s) 353, 465
BstV1I GCAGC 4 cut(s) 322, 438, 496, 1162
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 9 cut(s) 68, 242, 423, 833, 903, 962, 1094, 1116, 1225
BtgZI GCGATG 2 cut(s) 191, 791
BtrI CACGTC 2 cut(s) 817, 920
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 5 cut(s) 61, 90, 111, 342, 834
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 8 cut(s) 70, 74, 355, 425, 774, 868, 1011, 1227
CaiI CAGNNNCTG 2 cut(s) 503, 1175
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 5 cut(s) 901, 902, 960, 961, 986
Cfr9I CCCGGG 1 cut(s) 1023
CseI GACGC 2 cut(s) 230, 346
Csp6I GTAC 2 cut(s) 445, 1106
CviAII CATG 4 cut(s) 187, 293, 347, 1006
CviQI GTAC 2 cut(s) 445, 1106
DdeI CTNAG 4 cut(s) 39, 138, 165, 496
DpnI GATC 4 cut(s) 276, 317, 396, 941
DpnII GATC 4 cut(s) 274, 315, 394, 939
EaeI YGGCCR 4 cut(s) 421, 831, 1092, 1114
Eam1104I CTCTTC 2 cut(s) 756, 789
EarI CTCTTC 2 cut(s) 756, 789
EciI GGCGGA 2 cut(s) 597, 1232
Eco130I CCWWGG 2 cut(s) 409, 956
Eco24I GRGCYC 2 cut(s) 905, 964
Eco47I GGWCC 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 770, 1092, 1165
Eco88I CYCGRG 1 cut(s) 1023
EcoO109I RGGNCCY 2 cut(s) 960, 986
EcoRII CCWGG 3 cut(s) 697, 1094, 1204
EcoT14I CCWWGG 2 cut(s) 409, 956
EcoT38I GRGCYC 2 cut(s) 905, 964
ErhI CCWWGG 2 cut(s) 409, 956
FaeI CATG 4 cut(s) 190, 296, 350, 1009
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FaqI GGGAC 3 cut(s) 685, 841, 999
FatI CATG 4 cut(s) 186, 292, 346, 1005
FauI CCCGC 2 cut(s) 649, 1002
FbaI TGATCA 1 cut(s) 939
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 9 cut(s) 243, 311, 351, 452, 510, 1080, 1114, 1173, 1176
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 2 cut(s) 905, 964
Fsp4HI GCNGC 9 cut(s) 243, 311, 351, 452, 510, 1080, 1114, 1173, 1176
FspBI CTAG 3 cut(s) 272, 306, 957
GlaI GCGC 1 cut(s) 464
GluI GCNGC 9 cut(s) 243, 311, 351, 452, 510, 1080, 1114, 1173, 1176
HaeIII GGCC 9 cut(s) 68, 242, 423, 833, 903, 962, 1094, 1116, 1225
HapII CCGG 3 cut(s) 726, 899, 1024
HgaI GACGC 2 cut(s) 230, 346
HhaI GCGC 1 cut(s) 465
Hin1II CATG 4 cut(s) 190, 296, 350, 1009
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 2 cut(s) 6, 97
HindII GTYRAC 2 cut(s) 6, 97
HindIII AAGCTT 2 cut(s) 384, 1196
HinfI GANTC 2 cut(s) 22, 781
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 3 cut(s) 726, 899, 1024
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 4 cut(s) 6, 97, 269, 814
Hpy188I TCNGA 7 cut(s) 48, 166, 328, 637, 821, 1184, 1247
Hpy188III TCNNGA 3 cut(s) 149, 689, 739
Hpy8I GTNNAC 4 cut(s) 6, 97, 269, 814
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 2 cut(s) 818, 1189
HpyCH4III ACNGT 5 cut(s) 94, 106, 505, 838, 877
HpyCH4IV ACGT 5 cut(s) 265, 447, 647, 816, 919
HpyCH4V TGCA 6 cut(s) 335, 623, 814, 859, 1146, 1229
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 239, 363, 420, 460, 506
HpyF3I CTNAG 4 cut(s) 39, 138, 165, 496
HpySE526I ACGT 5 cut(s) 265, 447, 647, 816, 919
Hsp92II CATG 4 cut(s) 190, 296, 350, 1009
HspAI GCGC 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 939
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 4 cut(s) 274, 315, 394, 939
Lsp1109I GCAGC 4 cut(s) 322, 438, 496, 1162
LweI GCATC 2 cut(s) 613, 1066
MaeI CTAG 3 cut(s) 272, 306, 957
MaeII ACGT 5 cut(s) 265, 447, 647, 816, 919
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 276, 317, 396, 941
MboI GATC 4 cut(s) 274, 315, 394, 939
MboII GAAGA 8 cut(s) 128, 226, 380, 773, 776, 1076, 1085, 1234
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 3 cut(s) 816, 905, 964
MlsI TGGCCA 2 cut(s) 423, 1094
MluCI AATT 3 cut(s) 282, 1149, 1235
MluNI TGGCCA 2 cut(s) 423, 1094
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 1 cut(s) 799
Mox20I TGGCCA 2 cut(s) 423, 1094
MscI TGGCCA 2 cut(s) 423, 1094
MseI TTAA 3 cut(s) 60, 96, 768
Msp20I TGGCCA 2 cut(s) 423, 1094
MspA1I CMGCKG 1 cut(s) 1175
MspI CCGG 3 cut(s) 726, 899, 1024
MspR9I CCNGG 6 cut(s) 699, 900, 1024, 1025, 1096, 1206
MvaI CCWGG 3 cut(s) 699, 1096, 1206
MvnI CGCG 2 cut(s) 353, 465
MwoI GCNNNNNNNGC 6 cut(s) 230, 239, 363, 420, 460, 506
NciI CCSGG 3 cut(s) 900, 1024, 1025
NdeII GATC 4 cut(s) 274, 315, 394, 939
NlaIII CATG 4 cut(s) 190, 296, 350, 1009
NlaIV GGNNCC 5 cut(s) 396, 730, 903, 962, 987
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 657
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 9 cut(s) 244, 312, 352, 453, 511, 1081, 1115, 1174, 1177
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
Ppu21I YACGTR 2 cut(s) 266, 448
PpuMI RGGWCCY 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 3 cut(s) 697, 1094, 1204
PspGI CCWGG 3 cut(s) 697, 1094, 1204
PspN4I GGNNCC 5 cut(s) 396, 730, 903, 962, 987
PspOMI GGGCCC 2 cut(s) 901, 960
PspPI GGNCC 5 cut(s) 901, 902, 960, 961, 986
PspPPI RGGWCCY 1 cut(s) 986
PstNI CAGNNNCTG 2 cut(s) 503, 1175
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 2 cut(s) 446, 1107
RsaNI GTAC 2 cut(s) 445, 1106
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 60, 96, 768
SatI GCNGC 9 cut(s) 243, 311, 351, 452, 510, 1080, 1114, 1173, 1176
Sau3AI GATC 4 cut(s) 274, 315, 394, 939
Sau96I GGNCC 5 cut(s) 901, 902, 960, 961, 986
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 6 cut(s) 699, 900, 1024, 1025, 1096, 1206
SduI GDGCHC 3 cut(s) 816, 905, 964
SfaNI GCATC 2 cut(s) 613, 1066
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 986
SmaI CCCGGG 1 cut(s) 1025
Sse9I AATT 3 cut(s) 282, 1149, 1235
SspI AATATT 1 cut(s) 484
SspMI CTAG 3 cut(s) 272, 306, 957
StyD4I CCNGG 6 cut(s) 697, 898, 1022, 1023, 1094, 1204
StyI CCWWGG 2 cut(s) 409, 956
TaaI ACNGT 5 cut(s) 94, 106, 505, 838, 877
TaiI ACGT 5 cut(s) 268, 450, 650, 819, 922
TaqI TCGA 3 cut(s) 5, 198, 1201
TasI AATT 3 cut(s) 282, 1149, 1235
TauI GCSGC 5 cut(s) 245, 353, 1082, 1116, 1175
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 3 cut(s) 60, 96, 768
Tru9I TTAA 3 cut(s) 60, 96, 768
TscAI CASTG 5 cut(s) 61, 97, 111, 342, 841
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 310, 451, 509, 1175
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 129, 621, 939
TspGWI ACGGA 1 cut(s) 266
TspMI CCCGGG 1 cut(s) 1023
TspRI CASTG 5 cut(s) 61, 97, 111, 342, 841
Van91I CCANNNNNTGG 1 cut(s) 877
VneI GTGCAC 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 986
XapI RAATTY 1 cut(s) 1149
XceI RCATGY 1 cut(s) 350
XmaI CCCGGG 1 cut(s) 1023
XmaJI CCTAGG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 272, 306, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.