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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 515 |
| AccB1I | GGYRCC | 1 cut(s) | 515 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 769 |
| AccI | GTMKAC | 1 cut(s) | 656 |
| AccII | CGCG | 2 cut(s) | 896, 898 |
| AccIII | TCCGGA | 1 cut(s) | 57 |
| AciI | CCGC | 5 cut(s) | 411, 722, 726, 881, 962 |
| AclWI | GGATC | 4 cut(s) | 49, 210, 223, 521 |
| AcoI | YGGCCR | 3 cut(s) | 144, 322, 723 |
| AcsI | RAATTY | 1 cut(s) | 664 |
| AcuI | CTGAAG | 1 cut(s) | 1043 |
| AfaI | GTAC | 4 cut(s) | 347, 517, 575, 990 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 769, 942 |
| AgeI | ACCGGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 2 cut(s) | 677, 986 |
| AjiI | CACGTC | 1 cut(s) | 809 |
| AjnI | CCWGG | 6 cut(s) | 77, 120, 519, 576, 586, 905 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 272, 304 |
| AluBI | AGCT | 4 cut(s) | 139, 200, 251, 1058 |
| AluI | AGCT | 4 cut(s) | 139, 200, 251, 1058 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 3 cut(s) | 3, 55, 799 |
| AlwI | GGATC | 4 cut(s) | 49, 210, 223, 521 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1058 |
| Aor13HI | TCCGGA | 1 cut(s) | 57 |
| AoxI | GGCC | 7 cut(s) | 144, 322, 372, 715, 723, 843, 869 |
| ApeKI | GCWGC | 8 cut(s) | 22, 136, 197, 378, 381, 413, 996, 1058 |
| ApoI | RAATTY | 1 cut(s) | 664 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 638, 670 |
| AsiGI | ACCGGT | 1 cut(s) | 475 |
| Asp718I | GGTACC | 1 cut(s) | 515 |
| AspLEI | GCGC | 4 cut(s) | 484, 742, 898, 900 |
| AspS9I | GGNCC | 3 cut(s) | 716, 843, 869 |
| AsuC2I | CCSGG | 2 cut(s) | 334, 623 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 661, 1057 |
| BalI | TGGCCA | 2 cut(s) | 146, 324 |
| BamHI | GGATCC | 1 cut(s) | 215 |
| BanI | GGYRCC | 1 cut(s) | 515 |
| BanII | GRGCYC | 1 cut(s) | 317 |
| BauI | CACGAG | 1 cut(s) | 131 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvI | GCAGC | 8 cut(s) | 34, 148, 209, 390, 393, 400, 1008, 1045 |
| BccI | CCATC | 4 cut(s) | 173, 206, 551, 811 |
| BceAI | ACGGC | 1 cut(s) | 771 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 740, 774, 1018, 1052 |
| BciT130I | CCWGG | 6 cut(s) | 79, 122, 521, 578, 588, 907 |
| BclI | TGATCA | 3 cut(s) | 67, 607, 828 |
| BcnI | CCSGG | 2 cut(s) | 334, 623 |
| BcoDI | GTCTC | 3 cut(s) | 3, 55, 799 |
| BfaI | CTAG | 5 cut(s) | 224, 339, 789, 840, 1069 |
| BglII | AGATCT | 1 cut(s) | 1032 |
| Bme1390I | CCNGG | 8 cut(s) | 79, 122, 334, 521, 578, 588, 623, 907 |
| BmgBI | CACGTC | 1 cut(s) | 809 |
| BmgT120I | GGNCC | 3 cut(s) | 716, 843, 869 |
| BmiI | GGNNCC | 3 cut(s) | 217, 517, 870 |
| BmrFI | CCNGG | 8 cut(s) | 79, 122, 334, 521, 578, 588, 623, 907 |
| BmsI | GCATC | 2 cut(s) | 99, 425 |
| BpuEI | CTTGAG | 1 cut(s) | 348 |
| BpuMI | CCSGG | 2 cut(s) | 334, 623 |
| BsaI | GGTCTC | 1 cut(s) | 3 |
| BsaJI | CCNNGG | 9 cut(s) | 120, 147, 441, 519, 587, 639, 692, 905, 906 |
| BsaWI | WCCGGW | 2 cut(s) | 57, 475 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 766, 796 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 769, 942 |
| Bse118I | RCCGGY | 1 cut(s) | 475 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 214 |
| BseAI | TCCGGA | 1 cut(s) | 57 |
| BseBI | CCWGG | 6 cut(s) | 79, 122, 521, 578, 588, 907 |
| BseDI | CCNNGG | 9 cut(s) | 120, 147, 441, 519, 587, 639, 692, 905, 906 |
| BseGI | GGATG | 4 cut(s) | 165, 562, 655, 687 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 769, 942 |
| BseMI | GCAATG | 2 cut(s) | 180, 214 |
| BseMII | CTCAG | 1 cut(s) | 1065 |
| BsePI | GCGCGC | 1 cut(s) | 896 |
| BseRI | GAGGAG | 3 cut(s) | 771, 774, 836 |
| BseX3I | CGGCCG | 1 cut(s) | 723 |
| BseXI | GCAGC | 8 cut(s) | 34, 148, 209, 390, 393, 400, 1008, 1045 |
| BseYI | CCCAGC | 1 cut(s) | 718 |
| BsgI | GTGCAG | 1 cut(s) | 1015 |
| Bsh1236I | CGCG | 2 cut(s) | 896, 898 |
| Bsh1285I | CGRYCG | 1 cut(s) | 726 |
| BshFI | GGCC | 7 cut(s) | 146, 324, 374, 717, 725, 845, 871 |
| BshNI | GGYRCC | 1 cut(s) | 515 |
| BshTI | ACCGGT | 1 cut(s) | 475 |
| BsiEI | CGRYCG | 1 cut(s) | 726 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiSI | CCGG | 4 cut(s) | 58, 333, 476, 623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 769, 942 |
| BsmAI | GTCTC | 3 cut(s) | 3, 55, 799 |
| BsmBI | CGTCTC | 1 cut(s) | 799 |
| BsmI | GAATGC | 1 cut(s) | 574 |
| BsnI | GGCC | 7 cut(s) | 146, 324, 374, 717, 725, 845, 871 |
| Bso31I | GGTCTC | 1 cut(s) | 3 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 317 |
| Bsp13I | TCCGGA | 1 cut(s) | 57 |
| Bsp143I | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| Bsp19I | CCATGG | 1 cut(s) | 147 |
| BspACI | CCGC | 5 cut(s) | 411, 722, 726, 881, 962 |
| BspANI | GGCC | 7 cut(s) | 146, 324, 374, 717, 725, 845, 871 |
| BspCNI | CTCAG | 1 cut(s) | 1064 |
| BspEI | TCCGGA | 1 cut(s) | 57 |
| BspFNI | CGCG | 2 cut(s) | 896, 898 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 3 cut(s) | 217, 517, 870 |
| BspPI | GGATC | 4 cut(s) | 49, 210, 223, 521 |
| BspT107I | GGYRCC | 1 cut(s) | 515 |
| BspTNI | GGTCTC | 1 cut(s) | 3 |
| BsrDI | GCAATG | 2 cut(s) | 180, 214 |
| BsrFI | RCCGGY | 1 cut(s) | 475 |
| BssAI | RCCGGY | 1 cut(s) | 475 |
| BssECI | CCNNGG | 9 cut(s) | 120, 147, 441, 519, 587, 639, 692, 905, 906 |
| BssHII | GCGCGC | 1 cut(s) | 896 |
| BssMI | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| BssSI | CACGAG | 1 cut(s) | 131 |
| BssT1I | CCWWGG | 4 cut(s) | 147, 441, 639, 692 |
| Bst2BI | CACGAG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 6 cut(s) | 79, 122, 521, 578, 588, 907 |
| Bst4CI | ACNGT | 5 cut(s) | 681, 700, 769, 993, 1019 |
| Bst6I | CTCTTC | 1 cut(s) | 807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 889 |
| BstDEI | CTNAG | 2 cut(s) | 706, 1051 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstEII | GGTNACC | 1 cut(s) | 293 |
| BstF5I | GGATG | 4 cut(s) | 165, 562, 655, 687 |
| BstFNI | CGCG | 2 cut(s) | 896, 898 |
| BstHHI | GCGC | 4 cut(s) | 484, 742, 898, 900 |
| BstKTI | GATC | 8 cut(s) | 57, 70, 218, 262, 529, 610, 831, 1035 |
| BstMAI | GTCTC | 3 cut(s) | 3, 55, 799 |
| BstMBI | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| BstMCI | CGRYCG | 1 cut(s) | 726 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 321, 748, 877, 889 |
| BstNI | CCWGG | 6 cut(s) | 79, 122, 521, 578, 588, 907 |
| BstNSI | RCATGY | 1 cut(s) | 352 |
| BstPI | GGTNACC | 1 cut(s) | 293 |
| BstSCI | CCNGG | 8 cut(s) | 77, 120, 332, 519, 576, 586, 621, 905 |
| BstUI | CGCG | 2 cut(s) | 896, 898 |
| BstV1I | GCAGC | 8 cut(s) | 34, 148, 209, 390, 393, 400, 1008, 1045 |
| BstX2I | RGATCY | 2 cut(s) | 215, 1032 |
| BstYI | RGATCY | 2 cut(s) | 215, 1032 |
| BstZI | CGGCCG | 1 cut(s) | 723 |
| BsuRI | GGCC | 7 cut(s) | 146, 324, 374, 717, 725, 845, 871 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtrI | CACGTC | 1 cut(s) | 809 |
| BtsCI | GGATG | 4 cut(s) | 165, 562, 655, 687 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 2 cut(s) | 384, 998 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1058 |
| CciI | TCATGA | 1 cut(s) | 88 |
| CciNI | GCGGCCGC | 1 cut(s) | 723 |
| CfoI | GCGC | 4 cut(s) | 484, 742, 898, 900 |
| Cfr10I | RCCGGY | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 3 cut(s) | 716, 843, 869 |
| CsiI | ACCWGGT | 1 cut(s) | 576 |
| Csp6I | GTAC | 4 cut(s) | 346, 516, 574, 989 |
| CspAI | ACCGGT | 1 cut(s) | 475 |
| CviAII | CATG | 4 cut(s) | 89, 148, 241, 349 |
| CviQI | GTAC | 4 cut(s) | 346, 516, 574, 989 |
| DdeI | CTNAG | 2 cut(s) | 706, 1051 |
| DpnI | GATC | 8 cut(s) | 56, 69, 217, 261, 528, 609, 830, 1034 |
| DpnII | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| EaeI | YGGCCR | 3 cut(s) | 144, 322, 723 |
| EagI | CGGCCG | 1 cut(s) | 723 |
| Eam1104I | CTCTTC | 1 cut(s) | 807 |
| EarI | CTCTTC | 1 cut(s) | 807 |
| EclXI | CGGCCG | 1 cut(s) | 723 |
| Eco130I | CCWWGG | 4 cut(s) | 147, 441, 639, 692 |
| Eco24I | GRGCYC | 1 cut(s) | 317 |
| Eco31I | GGTCTC | 1 cut(s) | 3 |
| Eco52I | CGGCCG | 1 cut(s) | 723 |
| Eco57I | CTGAAG | 1 cut(s) | 1043 |
| Eco91I | GGTNACC | 1 cut(s) | 293 |
| EcoO109I | RGGNCCY | 2 cut(s) | 843, 869 |
| EcoO65I | GGTNACC | 1 cut(s) | 293 |
| EcoRII | CCWGG | 6 cut(s) | 77, 120, 519, 576, 586, 905 |
| EcoT14I | CCWWGG | 4 cut(s) | 147, 441, 639, 692 |
| EcoT38I | GRGCYC | 1 cut(s) | 317 |
| ErhI | CCWWGG | 4 cut(s) | 147, 441, 639, 692 |
| Esp3I | CGTCTC | 1 cut(s) | 799 |
| FaeI | CATG | 4 cut(s) | 92, 151, 244, 352 |
| FatI | CATG | 4 cut(s) | 88, 147, 240, 348 |
| FbaI | TGATCA | 3 cut(s) | 67, 607, 828 |
| FblI | GTMKAC | 1 cut(s) | 656 |
| FokI | GGATG | 4 cut(s) | 152, 569, 662, 674 |
| FriOI | GRGCYC | 1 cut(s) | 317 |
| FspBI | CTAG | 5 cut(s) | 224, 339, 789, 840, 1069 |
| GlaI | GCGC | 4 cut(s) | 483, 741, 897, 899 |
| GsaI | CCCAGC | 1 cut(s) | 722 |
| HaeIII | GGCC | 7 cut(s) | 146, 324, 374, 717, 725, 845, 871 |
| HapII | CCGG | 4 cut(s) | 58, 333, 476, 623 |
| HhaI | GCGC | 4 cut(s) | 484, 742, 898, 900 |
| Hin1II | CATG | 4 cut(s) | 92, 151, 244, 352 |
| Hin6I | GCGC | 4 cut(s) | 482, 740, 896, 898 |
| HinP1I | GCGC | 4 cut(s) | 482, 740, 896, 898 |
| HinfI | GANTC | 1 cut(s) | 74 |
| HpaII | CCGG | 4 cut(s) | 58, 333, 476, 623 |
| HphI | GGTGA | 3 cut(s) | 305, 661, 1057 |
| Hpy166II | GTNNAC | 2 cut(s) | 657, 703 |
| Hpy188I | TCNGA | 3 cut(s) | 279, 1023, 1054 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 71, 89, 263, 365 |
| Hpy8I | GTNNAC | 2 cut(s) | 657, 703 |
| HpyAV | CCTTC | 3 cut(s) | 506, 683, 707 |
| HpyCH4III | ACNGT | 5 cut(s) | 681, 700, 769, 993, 1019 |
| HpyCH4IV | ACGT | 1 cut(s) | 808 |
| HpyCH4V | TGCA | 7 cut(s) | 112, 185, 244, 416, 751, 996, 1029 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 321, 748, 877, 889 |
| HpyF3I | CTNAG | 2 cut(s) | 706, 1051 |
| HpySE526I | ACGT | 1 cut(s) | 808 |
| Hsp92II | CATG | 4 cut(s) | 92, 151, 244, 352 |
| HspAI | GCGC | 4 cut(s) | 482, 740, 896, 898 |
| Kpn2I | TCCGGA | 1 cut(s) | 57 |
| KpnI | GGTACC | 1 cut(s) | 519 |
| Ksp22I | TGATCA | 3 cut(s) | 67, 607, 828 |
| Kzo9I | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| Lsp1109I | GCAGC | 8 cut(s) | 34, 148, 209, 390, 393, 400, 1008, 1045 |
| LweI | GCATC | 2 cut(s) | 99, 425 |
| MabI | ACCWGGT | 1 cut(s) | 576 |
| MaeI | CTAG | 5 cut(s) | 224, 339, 789, 840, 1069 |
| MaeII | ACGT | 1 cut(s) | 808 |
| MaeIII | GTNAC | 3 cut(s) | 293, 403, 964 |
| MalI | GATC | 8 cut(s) | 56, 69, 217, 261, 528, 609, 830, 1034 |
| MboI | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| MboII | GAAGA | 3 cut(s) | 824, 959, 1027 |
| MflI | RGATCY | 2 cut(s) | 215, 1032 |
| MhlI | GDGCHC | 2 cut(s) | 88, 317 |
| MlsI | TGGCCA | 2 cut(s) | 146, 324 |
| MluCI | AATT | 2 cut(s) | 447, 664 |
| MluNI | TGGCCA | 2 cut(s) | 146, 324 |
| MlyI | GAGTC | 1 cut(s) | 83 |
| Mox20I | TGGCCA | 2 cut(s) | 146, 324 |
| MroI | TCCGGA | 1 cut(s) | 57 |
| MscI | TGGCCA | 2 cut(s) | 146, 324 |
| MseI | TTAA | 2 cut(s) | 153, 852 |
| Msp20I | TGGCCA | 2 cut(s) | 146, 324 |
| MspA1I | CMGCKG | 2 cut(s) | 413, 722 |
| MspI | CCGG | 4 cut(s) | 58, 333, 476, 623 |
| MspR9I | CCNGG | 8 cut(s) | 79, 122, 334, 521, 578, 588, 623, 907 |
| Mva1269I | GAATGC | 1 cut(s) | 574 |
| MvaI | CCWGG | 6 cut(s) | 79, 122, 521, 578, 588, 907 |
| MvnI | CGCG | 2 cut(s) | 896, 898 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 321, 748, 877, 889 |
| NciI | CCSGG | 2 cut(s) | 334, 623 |
| NcoI | CCATGG | 1 cut(s) | 147 |
| NdeII | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| NlaIII | CATG | 4 cut(s) | 92, 151, 244, 352 |
| NlaIV | GGNNCC | 3 cut(s) | 217, 517, 870 |
| NmuCI | GTSAC | 2 cut(s) | 293, 403 |
| NotI | GCGGCCGC | 1 cut(s) | 723 |
| NspI | RCATGY | 1 cut(s) | 352 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PasI | CCCWGGG | 1 cut(s) | 906 |
| PauI | GCGCGC | 1 cut(s) | 896 |
| PctI | GAATGC | 1 cut(s) | 574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 769 |
| PinAI | ACCGGT | 1 cut(s) | 475 |
| PleI | GAGTC | 1 cut(s) | 82 |
| PpsI | GAGTC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 6 cut(s) | 77, 120, 519, 576, 586, 905 |
| PspEI | GGTNACC | 1 cut(s) | 293 |
| PspFI | CCCAGC | 1 cut(s) | 718 |
| PspGI | CCWGG | 6 cut(s) | 77, 120, 519, 576, 586, 905 |
| PspN4I | GGNNCC | 3 cut(s) | 217, 517, 870 |
| PspPI | GGNCC | 3 cut(s) | 716, 843, 869 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1058 |
| PsuI | RGATCY | 2 cut(s) | 215, 1032 |
| PteI | GCGCGC | 1 cut(s) | 896 |
| RsaI | GTAC | 4 cut(s) | 347, 517, 575, 990 |
| RsaNI | GTAC | 4 cut(s) | 346, 516, 574, 989 |
| SaqAI | TTAA | 2 cut(s) | 153, 852 |
| Sau3AI | GATC | 8 cut(s) | 54, 67, 215, 259, 526, 607, 828, 1032 |
| Sau96I | GGNCC | 3 cut(s) | 716, 843, 869 |
| SchI | GAGTC | 1 cut(s) | 83 |
| ScrFI | CCNGG | 8 cut(s) | 79, 122, 334, 521, 578, 588, 623, 907 |
| SduI | GDGCHC | 2 cut(s) | 88, 317 |
| SexAI | ACCWGGT | 1 cut(s) | 576 |
| SfaNI | GCATC | 2 cut(s) | 99, 425 |
| SmlI | CTYRAG | 1 cut(s) | 363 |
| SmoI | CTYRAG | 1 cut(s) | 363 |
| Sse9I | AATT | 2 cut(s) | 447, 664 |
| SsiI | CCGC | 5 cut(s) | 411, 722, 726, 881, 962 |
| SspMI | CTAG | 5 cut(s) | 224, 339, 789, 840, 1069 |
| StyD4I | CCNGG | 8 cut(s) | 77, 120, 332, 519, 576, 586, 621, 905 |
| StyI | CCWWGG | 4 cut(s) | 147, 441, 639, 692 |
| TaaI | ACNGT | 5 cut(s) | 681, 700, 769, 993, 1019 |
| TaiI | ACGT | 1 cut(s) | 811 |
| TaqI | TCGA | 4 cut(s) | 47, 258, 683, 1038 |
| TasI | AATT | 2 cut(s) | 447, 664 |
| TatI | WGTACW | 2 cut(s) | 345, 988 |
| TauI | GCSGC | 3 cut(s) | 725, 728, 883 |
| Tru1I | TTAA | 2 cut(s) | 153, 852 |
| Tru9I | TTAA | 2 cut(s) | 153, 852 |
| TscAI | CASTG | 2 cut(s) | 391, 998 |
| TseFI | GTSAC | 2 cut(s) | 293, 403 |
| TseI | GCWGC | 8 cut(s) | 22, 136, 197, 378, 381, 413, 996, 1058 |
| Tsp45I | GTSAC | 2 cut(s) | 293, 403 |
| TspDTI | ATGAA | 2 cut(s) | 17, 515 |
| TspRI | CASTG | 2 cut(s) | 391, 998 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 769 |
| XapI | RAATTY | 1 cut(s) | 664 |
| XceI | RCATGY | 1 cut(s) | 352 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 307 |
| XmiI | GTMKAC | 1 cut(s) | 656 |
| XspI | CTAG | 5 cut(s) | 224, 339, 789, 840, 1069 |