Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 688, 1039 |
| AccI | GTMKAC | 1 cut(s) | 386 |
| AccII | CGCG | 2 cut(s) | 455, 729 |
| AciI | CCGC | 5 cut(s) | 329, 587, 606, 762, 1167 |
| AclWI | GGATC | 9 cut(s) | 129, 142, 209, 262, 440, 778, 806, 865, 1024 |
| AcoI | YGGCCR | 5 cut(s) | 3, 114, 241, 763, 872 |
| AcuI | CTGAAG | 2 cut(s) | 581, 1113 |
| AfaI | GTAC | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 688, 707, 1039 |
| AgsI | TTSAA | 3 cut(s) | 421, 464, 819 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 624 |
| AjnI | CCWGG | 4 cut(s) | 505, 614, 706, 853 |
| AleI | CACNNNNGTG | 1 cut(s) | 1058 |
| Alw26I | GTCTC | 2 cut(s) | 718, 1168 |
| AlwI | GGATC | 9 cut(s) | 129, 142, 209, 262, 440, 778, 806, 865, 1024 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 257 |
| AoxI | GGCC | 8 cut(s) | 3, 114, 241, 330, 763, 872, 909, 933 |
| ApeKI | GCWGC | 4 cut(s) | 300, 326, 824, 1023 |
| AspS9I | GGNCC | 3 cut(s) | 178, 618, 909 |
| AsuHPI | GGTGA | 4 cut(s) | 376, 601, 655, 1130 |
| AsuII | TTCGAA | 1 cut(s) | 124 |
| AsuNHI | GCTAGC | 1 cut(s) | 583 |
| AvaII | GGWCC | 2 cut(s) | 178, 618 |
| AxyI | CCTNAGG | 1 cut(s) | 250 |
| BalI | TGGCCA | 3 cut(s) | 5, 243, 874 |
| BamHI | GGATCC | 1 cut(s) | 134 |
| BauI | CACGAG | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| BbvI | GCAGC | 4 cut(s) | 312, 313, 811, 1035 |
| BccI | CCATC | 5 cut(s) | 125, 233, 322, 470, 920 |
| BceAI | ACGGC | 1 cut(s) | 570 |
| BciT130I | CCWGG | 4 cut(s) | 507, 616, 708, 855 |
| BclI | TGATCA | 2 cut(s) | 526, 747 |
| BcoDI | GTCTC | 2 cut(s) | 718, 1168 |
| BfaI | CTAG | 4 cut(s) | 219, 584, 713, 968 |
| BfmI | CTRYAG | 1 cut(s) | 396 |
| BisI | GCNGC | 6 cut(s) | 301, 327, 330, 763, 825, 1024 |
| BlsI | GCNGC | 6 cut(s) | 302, 328, 331, 764, 826, 1025 |
| Bme1390I | CCNGG | 4 cut(s) | 507, 616, 708, 855 |
| Bme18I | GGWCC | 2 cut(s) | 178, 618 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 3 cut(s) | 178, 618, 909 |
| BmiI | GGNNCC | 3 cut(s) | 136, 910, 996 |
| BmrFI | CCNGG | 4 cut(s) | 507, 616, 708, 855 |
| BmsI | GCATC | 3 cut(s) | 21, 113, 1084 |
| BmtI | GCTAGC | 1 cut(s) | 587 |
| BoxI | GACNNNNGTC | 1 cut(s) | 152 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BpmI | CTGGAG | 1 cut(s) | 650 |
| Bpu14I | TTCGAA | 1 cut(s) | 124 |
| BpuEI | CTTGAG | 2 cut(s) | 773, 977 |
| BsaJI | CCNNGG | 3 cut(s) | 229, 505, 614 |
| BsaWI | WCCGGW | 1 cut(s) | 1181 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 688, 707, 1039 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 3 cut(s) | 766, 875, 1033 |
| Bse21I | CCTNAGG | 1 cut(s) | 250 |
| BseBI | CCWGG | 4 cut(s) | 507, 616, 708, 855 |
| BseDI | CCNNGG | 3 cut(s) | 229, 505, 614 |
| BseGI | GGATG | 2 cut(s) | 225, 1196 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 688, 707, 1039 |
| BseMII | CTCAG | 5 cut(s) | 164, 264, 912, 932, 1096 |
| BseNI | ACTGG | 3 cut(s) | 766, 875, 1033 |
| BseRI | GAGGAG | 3 cut(s) | 693, 755, 1070 |
| BseXI | GCAGC | 4 cut(s) | 312, 313, 811, 1035 |
| BsgI | GTGCAG | 2 cut(s) | 776, 814 |
| Bsh1236I | CGCG | 2 cut(s) | 455, 729 |
| BshFI | GGCC | 8 cut(s) | 5, 116, 243, 332, 765, 874, 911, 935 |
| BsiSI | CCGG | 2 cut(s) | 117, 1182 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 688, 707, 1039 |
| BsmAI | GTCTC | 2 cut(s) | 718, 1168 |
| BsmBI | CGTCTC | 1 cut(s) | 718 |
| BsmI | GAATGC | 2 cut(s) | 679, 1111 |
| BsnI | GGCC | 8 cut(s) | 5, 116, 243, 332, 765, 874, 911, 935 |
| Bsp119I | TTCGAA | 1 cut(s) | 124 |
| BspACI | CCGC | 5 cut(s) | 329, 587, 606, 762, 1167 |
| BspANI | GGCC | 8 cut(s) | 5, 116, 243, 332, 765, 874, 911, 935 |
| BspCNI | CTCAG | 5 cut(s) | 163, 263, 913, 933, 1095 |
| BspFNI | CGCG | 2 cut(s) | 455, 729 |
| BspLI | GGNNCC | 3 cut(s) | 136, 910, 996 |
| BspOI | GCTAGC | 1 cut(s) | 587 |
| BspPI | GGATC | 9 cut(s) | 129, 142, 209, 262, 440, 778, 806, 865, 1024 |
| BspQI | GCTCTTC | 1 cut(s) | 896 |
| BspT104I | TTCGAA | 1 cut(s) | 124 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrI | ACTGG | 3 cut(s) | 766, 875, 1033 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 3 cut(s) | 229, 505, 614 |
| BssSI | CACGAG | 1 cut(s) | 284 |
| BssT1I | CCWWGG | 1 cut(s) | 229 |
| Bst2BI | CACGAG | 1 cut(s) | 284 |
| Bst2UI | CCWGG | 4 cut(s) | 507, 616, 708, 855 |
| Bst4CI | ACNGT | 2 cut(s) | 649, 837 |
| Bst6I | CTCTTC | 4 cut(s) | 600, 726, 896, 1116 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 326 |
| BstBI | TTCGAA | 1 cut(s) | 124 |
| BstC8I | GCNNGC | 4 cut(s) | 236, 535, 585, 679 |
| BstDEI | CTNAG | 6 cut(s) | 150, 250, 843, 921, 941, 1082 |
| BstF5I | GGATG | 2 cut(s) | 225, 1196 |
| BstFNI | CGCG | 2 cut(s) | 455, 729 |
| BstMAI | GTCTC | 2 cut(s) | 718, 1168 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 240, 326, 1003, 1012 |
| BstNI | CCWGG | 4 cut(s) | 507, 616, 708, 855 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 152 |
| BstSCI | CCNGG | 4 cut(s) | 505, 614, 706, 853 |
| BstSFI | CTRYAG | 1 cut(s) | 396 |
| BstUI | CGCG | 2 cut(s) | 455, 729 |
| BstV1I | GCAGC | 4 cut(s) | 312, 313, 811, 1035 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BstX2I | RGATCY | 5 cut(s) | 134, 214, 254, 783, 798 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 628 |
| BstYI | RGATCY | 5 cut(s) | 134, 214, 254, 783, 798 |
| Bsu36I | CCTNAGG | 1 cut(s) | 250 |
| BsuRI | GGCC | 8 cut(s) | 5, 116, 243, 332, 765, 874, 911, 935 |
| BtsCI | GGATG | 2 cut(s) | 225, 1196 |
| BtsI | GCAGTG | 1 cut(s) | 764 |
| BtsIMutI | CAGTG | 2 cut(s) | 764, 867 |
| Cac8I | GCNNGC | 4 cut(s) | 236, 535, 585, 679 |
| CaiI | CAGNNNCTG | 1 cut(s) | 257 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 3 cut(s) | 178, 618, 909 |
| CseI | GACGC | 2 cut(s) | 735, 1098 |
| Csp6I | GTAC | 1 cut(s) | 265 |
| CviAII | CATG | 3 cut(s) | 160, 1019, 1027 |
| CviQI | GTAC | 1 cut(s) | 265 |
| DdeI | CTNAG | 6 cut(s) | 150, 250, 843, 921, 941, 1082 |
| DriI | GACNNNNNGTC | 1 cut(s) | 624 |
| EaeI | YGGCCR | 5 cut(s) | 3, 114, 241, 763, 872 |
| Eam1104I | CTCTTC | 4 cut(s) | 600, 726, 896, 1116 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 624 |
| EarI | CTCTTC | 4 cut(s) | 600, 726, 896, 1116 |
| Eco130I | CCWWGG | 1 cut(s) | 229 |
| Eco47I | GGWCC | 2 cut(s) | 178, 618 |
| Eco57I | CTGAAG | 2 cut(s) | 581, 1113 |
| Eco81I | CCTNAGG | 1 cut(s) | 250 |
| EcoRII | CCWGG | 4 cut(s) | 505, 614, 706, 853 |
| EcoT14I | CCWWGG | 1 cut(s) | 229 |
| ErhI | CCWWGG | 1 cut(s) | 229 |
| Esp3I | CGTCTC | 1 cut(s) | 718 |
| FaeI | CATG | 3 cut(s) | 163, 1022, 1030 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 811, 843 |
| FatI | CATG | 3 cut(s) | 159, 1018, 1026 |
| FbaI | TGATCA | 2 cut(s) | 526, 747 |
| FblI | GTMKAC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 6 cut(s) | 301, 327, 330, 763, 825, 1024 |
| FokI | GGATG | 2 cut(s) | 212, 1183 |
| Fsp4HI | GCNGC | 6 cut(s) | 301, 327, 330, 763, 825, 1024 |
| FspBI | CTAG | 4 cut(s) | 219, 584, 713, 968 |
| GluI | GCNGC | 6 cut(s) | 301, 327, 330, 763, 825, 1024 |
| GsuI | CTGGAG | 1 cut(s) | 650 |
| HaeIII | GGCC | 8 cut(s) | 5, 116, 243, 332, 765, 874, 911, 935 |
| HapII | CCGG | 2 cut(s) | 117, 1182 |
| HgaI | GACGC | 2 cut(s) | 735, 1098 |
| Hin1II | CATG | 3 cut(s) | 163, 1022, 1030 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HindIII | AAGCTT | 1 cut(s) | 845 |
| HinfI | GANTC | 3 cut(s) | 148, 592, 925 |
| HpaII | CCGG | 2 cut(s) | 117, 1182 |
| HphI | GGTGA | 4 cut(s) | 376, 601, 655, 1130 |
| Hpy166II | GTNNAC | 3 cut(s) | 339, 387, 575 |
| Hpy188I | TCNGA | 6 cut(s) | 109, 198, 543, 896, 930, 1085 |
| Hpy188III | TCNNGA | 9 cut(s) | 17, 145, 252, 284, 497, 547, 629, 713, 819 |
| Hpy8I | GTNNAC | 3 cut(s) | 339, 387, 575 |
| HpyAV | CCTTC | 4 cut(s) | 283, 425, 629, 925 |
| HpyCH4III | ACNGT | 2 cut(s) | 649, 837 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 163, 320, 670, 757, 795, 1132 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 240, 326, 1003, 1012 |
| HpyF3I | CTNAG | 6 cut(s) | 150, 250, 843, 921, 941, 1082 |
| Hsp92II | CATG | 3 cut(s) | 163, 1022, 1030 |
| Ksp22I | TGATCA | 2 cut(s) | 526, 747 |
| LguI | GCTCTTC | 1 cut(s) | 896 |
| LmnI | GCTCC | 2 cut(s) | 479, 994 |
| Lsp1109I | GCAGC | 4 cut(s) | 312, 313, 811, 1035 |
| LweI | GCATC | 3 cut(s) | 21, 113, 1084 |
| MaeI | CTAG | 4 cut(s) | 219, 584, 713, 968 |
| MaeIII | GTNAC | 2 cut(s) | 589, 643 |
| MboII | GAAGA | 7 cut(s) | 113, 587, 743, 883, 1133, 1151, 1201 |
| MflI | RGATCY | 5 cut(s) | 134, 214, 254, 783, 798 |
| MlsI | TGGCCA | 3 cut(s) | 5, 243, 874 |
| MluCI | AATT | 6 cut(s) | 110, 172, 277, 422, 511, 684 |
| MluNI | TGGCCA | 3 cut(s) | 5, 243, 874 |
| MlyI | GAGTC | 2 cut(s) | 142, 586 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 243, 874 |
| MscI | TGGCCA | 3 cut(s) | 5, 243, 874 |
| MseI | TTAA | 2 cut(s) | 972, 1202 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1058 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 243, 874 |
| MspA1I | CMGCKG | 1 cut(s) | 326 |
| MspI | CCGG | 2 cut(s) | 117, 1182 |
| MspR9I | CCNGG | 4 cut(s) | 507, 616, 708, 855 |
| Mva1269I | GAATGC | 2 cut(s) | 679, 1111 |
| MvaI | CCWGG | 4 cut(s) | 507, 616, 708, 855 |
| MvnI | CGCG | 2 cut(s) | 455, 729 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 240, 326, 1003, 1012 |
| NheI | GCTAGC | 1 cut(s) | 583 |
| NlaIII | CATG | 3 cut(s) | 163, 1022, 1030 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 910, 996 |
| NmuCI | GTSAC | 2 cut(s) | 589, 643 |
| NspV | TTCGAA | 1 cut(s) | 124 |
| OliI | CACNNNNGTG | 1 cut(s) | 1058 |
| PciSI | GCTCTTC | 1 cut(s) | 896 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 912 |
| PctI | GAATGC | 2 cut(s) | 679, 1111 |
| PfeI | GAWTC | 1 cut(s) | 925 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 688, 1039 |
| PkrI | GCNGC | 6 cut(s) | 302, 328, 331, 764, 826, 1025 |
| PleI | GAGTC | 2 cut(s) | 142, 586 |
| PpsI | GAGTC | 2 cut(s) | 142, 586 |
| PshAI | GACNNNNGTC | 1 cut(s) | 152 |
| Psp6I | CCWGG | 4 cut(s) | 505, 614, 706, 853 |
| PspGI | CCWGG | 4 cut(s) | 505, 614, 706, 853 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 910, 996 |
| PspPI | GGNCC | 3 cut(s) | 178, 618, 909 |
| PstNI | CAGNNNCTG | 1 cut(s) | 257 |
| PsuI | RGATCY | 5 cut(s) | 134, 214, 254, 783, 798 |
| PvuII | CAGCTG | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 266 |
| RsaNI | GTAC | 1 cut(s) | 265 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1058 |
| SapI | GCTCTTC | 1 cut(s) | 896 |
| SaqAI | TTAA | 2 cut(s) | 972, 1202 |
| SatI | GCNGC | 6 cut(s) | 301, 327, 330, 763, 825, 1024 |
| Sau96I | GGNCC | 3 cut(s) | 178, 618, 909 |
| SchI | GAGTC | 2 cut(s) | 142, 586 |
| ScrFI | CCNGG | 4 cut(s) | 507, 616, 708, 855 |
| SfaNI | GCATC | 3 cut(s) | 21, 113, 1084 |
| SfcI | CTRYAG | 1 cut(s) | 396 |
| SfuI | TTCGAA | 1 cut(s) | 124 |
| SinI | GGWCC | 2 cut(s) | 178, 618 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1058 |
| SmlI | CTYRAG | 2 cut(s) | 788, 956 |
| SmoI | CTYRAG | 2 cut(s) | 788, 956 |
| Sse9I | AATT | 6 cut(s) | 110, 172, 277, 422, 511, 684 |
| SsiI | CCGC | 5 cut(s) | 329, 587, 606, 762, 1167 |
| SspMI | CTAG | 4 cut(s) | 219, 584, 713, 968 |
| StyD4I | CCNGG | 4 cut(s) | 505, 614, 706, 853 |
| StyI | CCWWGG | 1 cut(s) | 229 |
| TaaI | ACNGT | 2 cut(s) | 649, 837 |
| TaqI | TCGA | 3 cut(s) | 124, 850, 915 |
| TasI | AATT | 6 cut(s) | 110, 172, 277, 422, 511, 684 |
| TatI | WGTACW | 1 cut(s) | 264 |
| TauI | GCSGC | 2 cut(s) | 332, 765 |
| TfiI | GAWTC | 1 cut(s) | 925 |
| Tru1I | TTAA | 2 cut(s) | 972, 1202 |
| Tru9I | TTAA | 2 cut(s) | 972, 1202 |
| TscAI | CASTG | 2 cut(s) | 764, 867 |
| TseFI | GTSAC | 2 cut(s) | 589, 643 |
| TseI | GCWGC | 4 cut(s) | 300, 326, 824, 1023 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 643 |
| TspDTI | ATGAA | 1 cut(s) | 1161 |
| TspRI | CASTG | 2 cut(s) | 764, 867 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 688, 1039 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 618 |
| XbaI | TCTAGA | 1 cut(s) | 712 |
| XmiI | GTMKAC | 1 cut(s) | 386 |
| XspI | CTAG | 4 cut(s) | 219, 584, 713, 968 |