Rmu_sc0004230.1_g000005

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004230.1
OG0000057
Physical Location & Seq
Reverse (-)
12000 .. 14515
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004230.1_g000005.1.cds

Sequence Viewer

Length: 2223 bp
atgtcaactgaacgaggaggaaatcgacatcctactactgaaggcgagaaagttcccgccccccagcctaatcaggctggtgatacgtctagcatcacccaggtagcagcgagcgcagtttcaactattgactttgtgcctattctcgttccagaaaatgcaaccatagaagagcggcttgatatccttcaacagaattctgccgcataccatgagaagatgaaaaaagcccttgcgaaggaccgtcaacggcttgatgagttcacgatctcggtcaagaggcttgagctaggggcacaacaaacacaagggcaattggatggcatgaaccaaaaaatgcagaagaaccacgaagagccgttggtcgcaagcaaacacatcgcttcagaagtcgcgacgattcgcaaagaaggatccaacgtcgcgaccgaggtggccatgcagaaggctaacctcaatcaggctagagaggttctacttaaaacactaggagatcctagcgccattttgggctctctaggtcagtcccccatatctggcaagtacataccgccaaatgctctagaaaaagcaagcggcggaagtacagccacatccgctactgccgcatcagtcagaggtaaagagactactctggtaacgggtgggaagaacaaggccgggtcatcagtcatgcaaggaaccaggactttgaaaatcaatgaaggggccttttcatatcatagcctgtttccccaatacgacagtgacggagttgaatacgtgcaccacgatcaacctccagcaagccattatggtatcgaccaggttgaaagtccagcgaaggtcaccgcagccacaaagggtcagccaacagtggaggtagaagcaatgaccagggtagcgaaccagcctaacctggaggaggcctaccacgacccttcctaccgtatattacacagacaccttatcctaggggatacaagaacattactttctctactttctcgggagaggaagtcgaaaatgccacgacctatttggttaggtttcgagtacagtgtggccaggatcagttgcgagttagcctgcgatggagaagctgttcaaggaaaccttcgggactatcgagccggaagtggatctggtttcactcactcagatggctcagcagccaactggatccgctgtcatgtaccttcagcacttttagatccagaaaggaaagttgaacttgattctgctggagaaagaacaggtgaagttggcaatcaaaggcttagagccccgccaatgcaaaaaatagcatggaagcatgttcaattccatgggggaactgatcacagaatggctgcactcagccatcaatccagttcctttgatccttactacaagagtgagaaatctagtacagcagaggctgatgagtctgaagaagacgagatagttgccctggaactcacctggaaaaaagcttcaactctaaagcaactgaagctgtgcaaaaagtcggtgaagctcaagtcggtggttttcaccaaaccagagttcgcaagttatacttacgacgtgaacaaagcgcatgaaatcttggatgaaatgatcgccgcgaagatggtgaaaaccgacttcagcccatttcccaaactagagcagctaagggggaataaatactgcaaactccataatatgtggaatcataatacagccgattgggttaagctgaaggatcagatccaaatctggttaaataacggtagtttgcaagtagaggcgccgacaacagcagcagcgttggtggacctagatcccttcccagataccggcatcaacatggtggacgtggcacggggtgaaaaagataagcagaatcaaagtccaaaccacacggctaaggatttgaaaagggttggagacaaagtcgtgaagcgggaatccaagactcgtttacccatcgtcctatgctcgcgcccaaaagtatacagtggttcagaaactccttctccaagggactcaaacttattcaaaaagttgaagaccgcgagggaagaagggcaagcagataagcggcaaggggttttatccagaccttacattccgccagtgtcgacgtcctccatcaaagaagggatatggtatacacagaagaagggcaaggcggtggagatgagctcttcaaggaagagaaaactccagtggaggtttggagaagcaaagcgaaccttggaagcactagatcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

740

Amino Acids

81.78

Weight (kDa)

9.08

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000057)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00341 FvH4_2g18201 FvH4_2g24491 FvH4_2g24511 FvH4_3g22961 FvH4_3g33532 FvH4_3g33534 FvH4_4g05275 FvH4_4g12372 FvH4_5g20143 FvH4_7g12392
pyrus_communis pycom12g16120
rosa_chinensis RchiOBHm_Chr5g0023531 RchiOBHm_Chr6g0271201
rosa_laevigata RLG00000030639
rosa_multiflora Rmu_co8016136.1_g000001 Rmu_co8027180.1_g000001 Rmu_co8041016.1_g000001 Rmu_co8052812.1_g000001 Rmu_co8152468.1_g000001 Rmu_co8165796.1_g000001 Rmu_co8170214.1_g000001 Rmu_co8227433.1_g000001 Rmu_co8241379.1_g000001 Rmu_co8254305.1_g000001 Rmu_co8258647.1_g000001 Rmu_co8265535.1_g000002 Rmu_co8276845.1_g000001 Rmu_co8296303.1_g000001 Rmu_co8304827.1_g000001 Rmu_co8308345.1_g000001 Rmu_co8320493.1_g000002 Rmu_co8326955.1_g000001 Rmu_co8331007.1_g000001 Rmu_co8335625.1_g000001 Rmu_co8354465.1_g000001 Rmu_co8360201.1_g000001 Rmu_co8362075.1_g000002 Rmu_co8362991.1_g000001 Rmu_co8364567.1_g000001 Rmu_co8365273.1_g000001 Rmu_co8387267.1_g000001 Rmu_co8395251.1_g000002 Rmu_co8396677.1_g000001 Rmu_co8457659.1_g000001 Rmu_co8478117.1_g000001 Rmu_co8487163.1_g000001 Rmu_co8498169.1_g000001 Rmu_sc0000029.1_g000022 Rmu_sc0000063.1_g000007 Rmu_sc0000112.1_g000020 Rmu_sc0000146.1_g000006 Rmu_sc0000245.1_g000015 Rmu_sc0000276.1_g000036 Rmu_sc0000334.1_g000033 Rmu_sc0000334.1_g000034 Rmu_sc0000434.1_g000019 Rmu_sc0000441.1_g000118 Rmu_sc0000533.1_g000054 Rmu_sc0000533.1_g000055 Rmu_sc0000595.1_g000041 Rmu_sc0000663.1_g000019 Rmu_sc0000673.1_g000002 Rmu_sc0000698.1_g000102 Rmu_sc0000745.1_g000007 Rmu_sc0000768.1_g000018 Rmu_sc0000811.1_g000012 Rmu_sc0000826.1_g000009 Rmu_sc0000826.1_g000011 Rmu_sc0001051.1_g000042 Rmu_sc0001051.1_g000043 Rmu_sc0001148.1_g000014 Rmu_sc0001198.1_g000021 Rmu_sc0001227.1_g000008 Rmu_sc0001250.1_g000028 Rmu_sc0001395.1_g000019 Rmu_sc0001395.1_g000020 Rmu_sc0001396.1_g000002 Rmu_sc0001424.1_g000007 Rmu_sc0001455.1_g000025 Rmu_sc0001455.1_g000029 Rmu_sc0001499.1_g000036 Rmu_sc0001539.1_g000001 Rmu_sc0001562.1_g000027 Rmu_sc0001563.1_g000024 Rmu_sc0001719.1_g000022 Rmu_sc0001796.1_g000008 Rmu_sc0001884.1_g000022 Rmu_sc0001903.1_g000018 Rmu_sc0002041.1_g000012 Rmu_sc0002096.1_g000002 Rmu_sc0002126.1_g000027 Rmu_sc0002181.1_g000010 Rmu_sc0002259.1_g000004 Rmu_sc0002279.1_g000018 Rmu_sc0002312.1_g000060 Rmu_sc0002383.1_g000011 Rmu_sc0002401.1_g000012 Rmu_sc0002509.1_g000028 Rmu_sc0002569.1_g000008 Rmu_sc0002587.1_g000037 Rmu_sc0002665.1_g000006 Rmu_sc0002698.1_g000018 Rmu_sc0002724.1_g000002 Rmu_sc0002727.1_g000011 Rmu_sc0002927.1_g000055 Rmu_sc0002927.1_g000056 Rmu_sc0002943.1_g000009 Rmu_sc0002943.1_g000023 Rmu_sc0002998.1_g000001 Rmu_sc0003089.1_g000036 Rmu_sc0003127.1_g000022 Rmu_sc0003127.1_g000040 Rmu_sc0003207.1_g000010 Rmu_sc0003207.1_g000011 Rmu_sc0003275.1_g000034 Rmu_sc0003275.1_g000036 Rmu_sc0003337.1_g000047 Rmu_sc0003376.1_g000004 Rmu_sc0003522.1_g000024 Rmu_sc0003613.1_g000007 Rmu_sc0003708.1_g000026 Rmu_sc0003784.1_g000018 Rmu_sc0004079.1_g000005 Rmu_sc0004092.1_g000017 Rmu_sc0004168.1_g000058 Rmu_sc0004174.1_g000019 Rmu_sc0004199.1_g000049 Rmu_sc0004230.1_g000005 Rmu_sc0004283.1_g000021 Rmu_sc0004283.1_g000022 Rmu_sc0004314.1_g000017 Rmu_sc0004538.1_g000006 Rmu_sc0004542.1_g000011 Rmu_sc0004602.1_g000024 Rmu_sc0004641.1_g000006 Rmu_sc0004862.1_g000011 Rmu_sc0004941.1_g000043 Rmu_sc0005003.1_g000003 Rmu_sc0005112.1_g000018 Rmu_sc0005144.1_g000014 Rmu_sc0005266.1_g000014 Rmu_sc0005418.1_g000004 Rmu_sc0005627.1_g000006 Rmu_sc0005652.1_g000022 Rmu_sc0005747.1_g000032 Rmu_sc0005982.1_g000013 Rmu_sc0006050.1_g000017 Rmu_sc0006059.1_g000035 Rmu_sc0006128.1_g000002 Rmu_sc0006228.1_g000009 Rmu_sc0006243.1_g000009 Rmu_sc0006300.1_g000004 Rmu_sc0006463.1_g000007 Rmu_sc0006579.1_g000016 Rmu_sc0006595.1_g000011 Rmu_sc0006624.1_g000006 Rmu_sc0006624.1_g000007 Rmu_sc0006624.1_g000008 Rmu_sc0006674.1_g000025 Rmu_sc0006792.1_g000013 Rmu_sc0006872.1_g000022 Rmu_sc0006984.1_g000009 Rmu_sc0006984.1_g000010 Rmu_sc0006986.1_g000011 Rmu_sc0007016.1_g000001 Rmu_sc0007221.1_g000006 Rmu_sc0007222.1_g000005 Rmu_sc0007222.1_g000006 Rmu_sc0007251.1_g000001 Rmu_sc0007777.1_g000037 Rmu_sc0007826.1_g000018 Rmu_sc0008053.1_g000015 Rmu_sc0008502.1_g000006 Rmu_sc0008659.1_g000009 Rmu_sc0009045.1_g000009 Rmu_sc0009045.1_g000010 Rmu_sc0009060.1_g000012 Rmu_sc0009360.1_g000024 Rmu_sc0009431.1_g000001 Rmu_sc0009606.1_g000014 Rmu_sc0009774.1_g000001 Rmu_sc0009844.1_g000014 Rmu_sc0010313.1_g000001 Rmu_sc0010454.1_g000008 Rmu_sc0010543.1_g000016 Rmu_sc0010900.1_g000002 Rmu_sc0010925.1_g000009 Rmu_sc0011136.1_g000012 Rmu_sc0011534.1_g000004 Rmu_sc0011809.1_g000007 Rmu_sc0011917.1_g000005 Rmu_sc0012103.1_g000001 Rmu_sc0012287.1_g000001 Rmu_sc0012303.1_g000007 Rmu_sc0012344.1_g000009 Rmu_sc0012674.1_g000007 Rmu_sc0012686.1_g000001 Rmu_sc0012742.1_g000005 Rmu_sc0012746.1_g000026 Rmu_sc0012746.1_g000027 Rmu_sc0013419.1_g000008 Rmu_sc0014866.1_g000004 Rmu_sc0015325.1_g000011 Rmu_sc0015486.1_g000005 Rmu_sc0015651.1_g000002 Rmu_sc0015783.1_g000001 Rmu_sc0016387.1_g000009 Rmu_sc0017518.1_g000005 Rmu_sc0018480.1_g000001 Rmu_sc0018537.1_g000003 Rmu_sc0019200.1_g000002 Rmu_sc0019544.1_g000014 Rmu_sc0019544.1_g000015 Rmu_sc0019873.1_g000001 Rmu_sc0020392.1_g000001 Rmu_sc0020466.1_g000001 Rmu_sc0022008.1_g000001 Rmu_sc0022008.1_g000002 Rmu_sc0022274.1_g000001 Rmu_sc0023644.1_g000005 Rmu_sc0024657.1_g000001 Rmu_sc0024721.1_g000003 Rmu_sc0025790.1_g000001 Rmu_sc0026866.1_g000001 Rmu_sc0027363.1_g000002 Rmu_sc0027485.1_g000001 Rmu_sc0028394.1_g000001 Rmu_sc0033121.1_g000002 Rmu_sc0033838.1_g000001 Rmu_sc0035536.1_g000001 Rmu_sc0036296.1_g000001 Rmu_sc0036297.1_g000001 Rmu_sc0036298.1_g000001 Rmu_sc0036797.1_g000001 Rmu_sc0037010.1_g000001 Rmu_sc0037444.1_g000002 Rmu_sc0039012.1_g000002 Rmu_sc0040172.1_g000001 Rmu_sc0042083.1_g000001 Rmu_ssc0000018.1_g000001 Rmu_ssc0000171.1_g000032 Rmu_ssc0000213.1_g000064 Rmu_ssc0000213.1_g000096 Rmu_ssc0000262.1_g000017 Rmu_ssc0000295.1_g000036 Rmu_ssc0000343.1_g000008 Rmu_ssc0000398.1_g000003 Rmu_ssc0000400.1_g000085 Rmu_ssc0000438.1_g000007 Rmu_ssc0000478.1_g000003
rosa_roxburghii Rroxscaffold_166G00440710 Rroxscaffold_166G00440720 Rroxscaffold_174G00435300 Rroxscaffold_174G00435310 Rroxscaffold_177G00434290 Rroxscaffold_177G00434300 Rroxscaffold_177G00434310 Rroxscaffold_178G00437310 Rroxscaffold_1G00002500 Rroxscaffold_1G00004730 Rroxscaffold_1G00008660 Rroxscaffold_1G00008670 Rroxscaffold_1G00008680 Rroxscaffold_1G00008690 Rroxscaffold_1G00010260 Rroxscaffold_1G00015670 Rroxscaffold_1G00021140 Rroxscaffold_1G00024380 Rroxscaffold_1G00032420 Rroxscaffold_1G00050600 Rroxscaffold_1G00050610 Rroxscaffold_1G00055970 Rroxscaffold_1G00066220 Rroxscaffold_2G00085370 Rroxscaffold_2G00092350 Rroxscaffold_2G00092360 Rroxscaffold_2G00093350 Rroxscaffold_2G00097090 Rroxscaffold_2G00108040 Rroxscaffold_2G00109970 Rroxscaffold_2G00111470 Rroxscaffold_2G00111480 Rroxscaffold_2G00112000 Rroxscaffold_2G00112060 Rroxscaffold_2G00129160 Rroxscaffold_2G00132340 Rroxscaffold_2G00136720 Rroxscaffold_2G00152910 Rroxscaffold_3G00223160 Rroxscaffold_3G00223170 Rroxscaffold_3G00223520 Rroxscaffold_3G00230980 Rroxscaffold_3G00245030 Rroxscaffold_3G00259050 Rroxscaffold_3G00259060 Rroxscaffold_3G00259070 Rroxscaffold_3G00267470 Rroxscaffold_3G00272040 Rroxscaffold_3G00272440 Rroxscaffold_3G00272450 Rroxscaffold_4G00285860 Rroxscaffold_4G00285870 Rroxscaffold_4G00294380 Rroxscaffold_4G00294390 Rroxscaffold_4G00297890 Rroxscaffold_4G00298150 Rroxscaffold_4G00303090 Rroxscaffold_4G00306480 Rroxscaffold_4G00306680 Rroxscaffold_4G00310490 Rroxscaffold_4G00310630 Rroxscaffold_4G00310670 Rroxscaffold_4G00310680 Rroxscaffold_4G00310690 Rroxscaffold_4G00317930 Rroxscaffold_4G00320190 Rroxscaffold_4G00323370 Rroxscaffold_4G00323380 Rroxscaffold_4G00324200 Rroxscaffold_4G00331220 Rroxscaffold_5G00339230 Rroxscaffold_5G00341260 Rroxscaffold_5G00343120 Rroxscaffold_5G00345440 Rroxscaffold_5G00345450 Rroxscaffold_5G00353190 Rroxscaffold_5G00353420 Rroxscaffold_5G00356560 Rroxscaffold_5G00359790 Rroxscaffold_5G00381710 Rroxscaffold_5G00381720 Rroxscaffold_5G00386250 Rroxscaffold_5G00387520 Rroxscaffold_6G00390180 Rroxscaffold_6G00392810 Rroxscaffold_6G00401230 Rroxscaffold_6G00402640 Rroxscaffold_6G00405640 Rroxscaffold_6G00405650 Rroxscaffold_6G00405850 Rroxscaffold_6G00405860 Rroxscaffold_6G00412020 Rroxscaffold_6G00415690 Rroxscaffold_6G00415700 Rroxscaffold_7G00168110 Rroxscaffold_7G00178950 Rroxscaffold_7G00178960 Rroxscaffold_7G00193670 Rroxscaffold_7G00203020 Rroxscaffold_7G00203340 Rroxscaffold_7G00203550 Rroxscaffold_7G00207220 Rroxscaffold_7G00207250 Rroxscaffold_7G00207430 Rroxscaffold_7G00209310 Rroxscaffold_7G00211530 Rroxscaffold_7G00211540 Rroxscaffold_7G00214160 Rroxscaffold_7G00216040 Rroxscaffold_7G00216800
rosa_samantha Rh1AG276800 Rh1CG260400 Rh3CG366700
rosa_wichuraiana Rw1G001440 Rw3G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2093
AccB1I GGYRCC 1 cut(s) 1753
AccBSI CCGCTC 1 cut(s) 175
AccI GTMKAC 3 cut(s) 1959, 2087, 2117
AccII CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
AcoI YGGCCR 2 cut(s) 435, 1044
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 7 cut(s) 60, 369, 1164, 1431, 1493, 1594, 1724
AcyI GRCGYC 2 cut(s) 1754, 2090
AdeI CACNNNGTG 1 cut(s) 1832
AfaI GTAC 5 cut(s) 545, 586, 1037, 1176, 1390
AfiI CCNNNNNNNGG 5 cut(s) 238, 460, 536, 904, 1802
AjiI CACGTC 2 cut(s) 1549, 1822
AjnI CCWGG 8 cut(s) 99, 683, 804, 875, 897, 1046, 1431, 1442
AjuI GAANNNNNNNTTGG 2 cut(s) 1511, 1543
AloI GAACNNNNNNTCC 2 cut(s) 1068, 1100
AluBI AGCT 8 cut(s) 289, 1082, 1454, 1477, 1498, 1636, 1702, 2151
AluI AGCT 8 cut(s) 289, 1082, 1454, 1477, 1498, 1636, 1702, 2151
Alw21I GWGCWC 2 cut(s) 768, 2153
Alw26I GTCTC 2 cut(s) 620, 1887
Alw44I GTGCAC 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 1400
Ama87I CYCGRG 1 cut(s) 987
AoxI GGCC 5 cut(s) 435, 657, 708, 906, 1044
ApaLI GTGCAC 1 cut(s) 764
ApeKI GCWGC 7 cut(s) 107, 833, 1151, 1331, 1633, 1766, 1769
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 1083
AspA2I CCTAGG 1 cut(s) 952
AspLEI GCGC 5 cut(s) 116, 503, 1561, 1756, 1950
AspS9I GGNCC 3 cut(s) 241, 708, 1780
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 9 cut(s) 88, 92, 820, 1250, 1432, 1504, 1507, 1609, 1844
AvaI CYCGRG 1 cut(s) 987
AvaII GGWCC 2 cut(s) 241, 1780
AvrII CCTAGG 1 cut(s) 952
BaeGI GKGCMC 2 cut(s) 298, 768
BalI TGGCCA 2 cut(s) 437, 1046
BamHI GGATCC 2 cut(s) 413, 1161
BanI GGYRCC 1 cut(s) 1753
BanII GRGCYC 3 cut(s) 515, 1267, 2153
BbsI GAAGAC 2 cut(s) 1422, 2021
Bbv12I GWGCWC 2 cut(s) 768, 2153
BbvI GCAGC 7 cut(s) 119, 845, 1163, 1318, 1645, 1778, 1781
BccI CCATC 7 cut(s) 314, 1067, 1136, 1350, 1588, 1940, 2105
BceAI ACGGC 3 cut(s) 266, 343, 1884
BcgI CGANNNNNNTGC 4 cut(s) 361, 395, 1409, 1443
BciT130I CCWGG 8 cut(s) 101, 685, 806, 877, 899, 1048, 1433, 1444
BciVI GTATCC 1 cut(s) 952
BclI TGATCA 1 cut(s) 1318
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 620, 1887
BfoI RGCGCY 2 cut(s) 504, 1757
BfuI GTATCC 1 cut(s) 952
BlnI CCTAGG 1 cut(s) 952
BlpI GCTNAGC 1 cut(s) 1147
Bme1390I CCNGG 9 cut(s) 101, 661, 685, 806, 877, 899, 1048, 1433, 1444
Bme18I GGWCC 2 cut(s) 241, 1780
BmeT110I CYCGRG 1 cut(s) 987
BmgBI CACGTC 2 cut(s) 1549, 1822
BmgT120I GGNCC 3 cut(s) 241, 708, 1780
BmiI GGNNCC 5 cut(s) 415, 682, 709, 1163, 1755
BmrFI CCNGG 9 cut(s) 101, 661, 685, 806, 877, 899, 1048, 1433, 1444
BmsI GCATC 3 cut(s) 102, 617, 1815
BpiI GAAGAC 2 cut(s) 1422, 2021
BplI GAGNNNNNCTC 2 cut(s) 2135, 2167
BpmI CTGGAG 4 cut(s) 765, 920, 1245, 2156
Bpu10I CCTNAGC 2 cut(s) 1637, 1872
Bpu1102I GCTNAGC 1 cut(s) 1147
BpuEI CTTGAG 2 cut(s) 305, 1484
BpuMI CCSGG 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 1718
BsaHI GRCGYC 2 cut(s) 1754, 2090
BsaJI CCNNGG 8 cut(s) 99, 429, 876, 952, 1306, 1431, 1985, 2202
BsaXI ACNNNNNCTCC 8 cut(s) 983, 1013, 1068, 1098, 1884, 1914, 1966, 1996
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 460, 536, 904, 1802
Bse118I RCCGGY 1 cut(s) 1802
Bse1I ACTGG 4 cut(s) 1163, 1350, 2081, 2173
Bse3DI GCAATG 1 cut(s) 876
Bse8I GATNNNNATC 1 cut(s) 1718
BseBI CCWGG 8 cut(s) 101, 685, 806, 877, 899, 1048, 1433, 1444
BseDI CCNNGG 8 cut(s) 99, 429, 876, 952, 1306, 1431, 1985, 2202
BseGI GGATG 4 cut(s) 28, 325, 593, 1579
BseJI GATNNNNATC 1 cut(s) 1718
BseLI CCNNNNNNNGG 5 cut(s) 238, 460, 536, 904, 1802
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 3 cut(s) 1152, 1161, 1351
BseNI ACTGG 4 cut(s) 1163, 1350, 2081, 2173
BseRI GAGGAG 2 cut(s) 30, 917
BseSI GKGCMC 2 cut(s) 298, 768
BseXI GCAGC 7 cut(s) 119, 845, 1163, 1318, 1645, 1778, 1781
BseYI CCCAGC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 1317
Bsh1236I CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 5 cut(s) 437, 659, 710, 908, 1046
BshNI GGYRCC 1 cut(s) 1753
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 768, 2153
BsiHKCI CYCGRG 1 cut(s) 987
BsiSI CCGG 3 cut(s) 660, 1113, 1803
BslFI GGGAC 3 cut(s) 511, 1115, 2003
BslI CCNNNNNNNGG 5 cut(s) 238, 460, 536, 904, 1802
BsmAI GTCTC 2 cut(s) 620, 1887
BsmFI GGGAC 3 cut(s) 511, 1115, 2003
BsnI GGCC 5 cut(s) 437, 659, 710, 908, 1046
BsoBI CYCGRG 1 cut(s) 987
Bsp1286I GDGCHC 5 cut(s) 298, 515, 768, 1267, 2153
Bsp1720I GCTNAGC 1 cut(s) 1147
Bsp19I CCATGG 1 cut(s) 1306
Bsp68I TCGCGA 2 cut(s) 395, 425
BspANI GGCC 5 cut(s) 437, 659, 710, 908, 1046
BspCNI CTCAG 3 cut(s) 1151, 1160, 1350
BspFNI CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
BspLI GGNNCC 5 cut(s) 415, 682, 709, 1163, 1755
BspQI GCTCTTC 3 cut(s) 165, 348, 2158
BspT107I GGYRCC 1 cut(s) 1753
BsrBI CCGCTC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 876
BsrFI RCCGGY 1 cut(s) 1802
BsrI ACTGG 4 cut(s) 1163, 1350, 2081, 2173
BssAI RCCGGY 1 cut(s) 1802
BssECI CCNNGG 8 cut(s) 99, 429, 876, 952, 1306, 1431, 1985, 2202
BssNAI GTATAC 2 cut(s) 1960, 2118
BssNI GRCGYC 2 cut(s) 1754, 2090
BssT1I CCWWGG 4 cut(s) 952, 1306, 1985, 2202
Bst1107I GTATAC 2 cut(s) 1960, 2118
Bst2UI CCWGG 8 cut(s) 101, 685, 806, 877, 899, 1048, 1433, 1444
Bst4CI ACNGT 7 cut(s) 245, 746, 856, 929, 1040, 1736, 1964
Bst6I CTCTTC 4 cut(s) 165, 348, 2156, 2158
BstACI GRCGYC 2 cut(s) 1754, 2090
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 7 cut(s) 112, 370, 574, 787, 1069, 1946, 2037
BstDEI CTNAG 6 cut(s) 1138, 1147, 1259, 1337, 1637, 1872
BstDSI CCRYGG 1 cut(s) 1306
BstEII GGTNACC 1 cut(s) 826
BstENI CCTNNNNNAGG 3 cut(s) 236, 458, 902
BstF5I GGATG 4 cut(s) 28, 325, 593, 1579
BstFNI CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
BstH2I RGCGCY 2 cut(s) 504, 1757
BstHHI GCGC 5 cut(s) 116, 503, 1561, 1756, 1950
BstMAI GTCTC 2 cut(s) 620, 1887
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 4 cut(s) 113, 596, 605, 1474
BstNI CCWGG 8 cut(s) 101, 685, 806, 877, 899, 1048, 1433, 1444
BstNSI RCATGY 1 cut(s) 1298
BstPI GGTNACC 1 cut(s) 826
BstSCI CCNGG 9 cut(s) 99, 659, 683, 804, 875, 897, 1046, 1431, 1442
BstSLI GKGCMC 2 cut(s) 298, 768
BstUI CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
BstV1I GCAGC 7 cut(s) 119, 845, 1163, 1318, 1645, 1778, 1781
BstV2I GAAGAC 2 cut(s) 1422, 2021
BstX2I RGATCY 7 cut(s) 413, 493, 1121, 1161, 1192, 1713, 1786
BstYI RGATCY 7 cut(s) 413, 493, 1121, 1161, 1192, 1713, 1786
BstZ17I GTATAC 2 cut(s) 1960, 2118
BsuI GTATCC 1 cut(s) 952
BsuRI GGCC 5 cut(s) 437, 659, 710, 908, 1046
BtgI CCRYGG 1 cut(s) 1306
BtgZI GCGATG 2 cut(s) 364, 1086
BtrI CACGTC 2 cut(s) 1549, 1822
BtsCI GGATG 4 cut(s) 28, 325, 593, 1579
BtsIMutI CAGTG 6 cut(s) 751, 861, 1045, 1969, 2088, 2180
BtuMI TCGCGA 2 cut(s) 395, 425
Cac8I GCNNGC 7 cut(s) 112, 370, 574, 787, 1069, 1946, 2037
CaiI CAGNNNCTG 1 cut(s) 1400
CfoI GCGC 5 cut(s) 116, 503, 1561, 1756, 1950
Cfr10I RCCGGY 1 cut(s) 1802
Cfr13I GGNCC 3 cut(s) 241, 708, 1780
CsiI ACCWGGT 1 cut(s) 804
Csp6I GTAC 5 cut(s) 544, 585, 1036, 1175, 1389
CviQI GTAC 5 cut(s) 544, 585, 1036, 1175, 1389
DdeI CTNAG 6 cut(s) 1138, 1147, 1259, 1337, 1637, 1872
DinI GGCGCC 1 cut(s) 1755
DraIII CACNNNGTG 1 cut(s) 1832
EaeI YGGCCR 2 cut(s) 435, 1044
Eam1104I CTCTTC 4 cut(s) 165, 348, 2156, 2158
EarI CTCTTC 4 cut(s) 165, 348, 2156, 2158
EciI GGCGGA 2 cut(s) 594, 2067
Ecl136II GAGCTC 1 cut(s) 2151
Eco130I CCWWGG 4 cut(s) 952, 1306, 1985, 2202
Eco147I AGGCCT 1 cut(s) 908
Eco24I GRGCYC 3 cut(s) 515, 1267, 2153
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 241, 1780
Eco53kI GAGCTC 1 cut(s) 2151
Eco57I CTGAAG 7 cut(s) 60, 369, 1164, 1431, 1493, 1594, 1724
Eco88I CYCGRG 1 cut(s) 987
Eco91I GGTNACC 1 cut(s) 826
EcoICRI GAGCTC 1 cut(s) 2151
EcoNI CCTNNNNNAGG 3 cut(s) 236, 458, 902
EcoO109I RGGNCCY 1 cut(s) 708
EcoO65I GGTNACC 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 8 cut(s) 99, 683, 804, 875, 897, 1046, 1431, 1442
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 4 cut(s) 952, 1306, 1985, 2202
EcoT38I GRGCYC 3 cut(s) 515, 1267, 2153
EgeI GGCGCC 1 cut(s) 1755
EheI GGCGCC 1 cut(s) 1755
ErhI CCWWGG 4 cut(s) 952, 1306, 1985, 2202
FaqI GGGAC 3 cut(s) 511, 1115, 2003
FauI CCCGC 3 cut(s) 64, 1275, 1902
FbaI TGATCA 1 cut(s) 1318
FblI GTMKAC 3 cut(s) 1959, 2087, 2117
FokI GGATG 4 cut(s) 15, 332, 580, 1586
FriOI GRGCYC 3 cut(s) 515, 1267, 2153
GlaI GCGC 5 cut(s) 115, 502, 1560, 1755, 1949
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 4 cut(s) 765, 920, 1245, 2156
HaeII RGCGCY 2 cut(s) 504, 1757
HaeIII GGCC 5 cut(s) 437, 659, 710, 908, 1046
HapII CCGG 3 cut(s) 660, 1113, 1803
HhaI GCGC 5 cut(s) 116, 503, 1561, 1756, 1950
Hin1I GRCGYC 2 cut(s) 1754, 2090
Hin6I GCGC 5 cut(s) 114, 501, 1559, 1754, 1948
HinP1I GCGC 5 cut(s) 114, 501, 1559, 1754, 1948
HincII GTYRAC 3 cut(s) 6, 248, 2088
HindII GTYRAC 3 cut(s) 6, 248, 2088
HindIII AAGCTT 1 cut(s) 1452
HinfI GANTC 8 cut(s) 400, 1217, 1406, 1675, 1849, 1913, 1921, 1991
HpaII CCGG 3 cut(s) 660, 1113, 1803
HphI GGTGA 9 cut(s) 88, 92, 820, 1250, 1432, 1504, 1507, 1609, 1844
Hpy188I TCNGA 6 cut(s) 388, 617, 1141, 1411, 1713, 1972
Hpy99I CGWCG 4 cut(s) 400, 425, 1550, 2092
HpyCH4III ACNGT 7 cut(s) 245, 746, 856, 929, 1040, 1736, 1964
HpyCH4IV ACGT 6 cut(s) 86, 420, 762, 1548, 1821, 2090
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 596, 605, 1474
HpyF3I CTNAG 6 cut(s) 1138, 1147, 1259, 1337, 1637, 1872
HpySE526I ACGT 6 cut(s) 86, 420, 762, 1548, 1821, 2090
Hsp92I GRCGYC 2 cut(s) 1754, 2090
HspAI GCGC 5 cut(s) 114, 501, 1559, 1754, 1948
KasI GGCGCC 1 cut(s) 1753
Ksp22I TGATCA 1 cut(s) 1318
LguI GCTCTTC 3 cut(s) 165, 348, 2158
Lsp1109I GCAGC 7 cut(s) 119, 845, 1163, 1318, 1645, 1778, 1781
LweI GCATC 3 cut(s) 102, 617, 1815
MabI ACCWGGT 1 cut(s) 804
MaeII ACGT 6 cut(s) 86, 420, 762, 1548, 1821, 2090
MaeIII GTNAC 3 cut(s) 637, 746, 826
MbiI CCGCTC 1 cut(s) 175
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 7 cut(s) 413, 493, 1121, 1161, 1192, 1713, 1786
MhlI GDGCHC 5 cut(s) 298, 515, 768, 1267, 2153
MlsI TGGCCA 2 cut(s) 437, 1046
MluCI AATT 3 cut(s) 196, 314, 1301
MluNI TGGCCA 2 cut(s) 437, 1046
Mly113I GGCGCC 1 cut(s) 1754
MlyI GAGTC 3 cut(s) 1415, 1915, 1985
MmeI TCCRAC 2 cut(s) 441, 1870
Mox20I TGGCCA 2 cut(s) 437, 1046
MroXI GAANNNNTTC 1 cut(s) 1083
MscI TGGCCA 2 cut(s) 437, 1046
MseI TTAA 3 cut(s) 480, 1698, 1727
MslI CAYNNNNRTG 2 cut(s) 1140, 1811
Msp20I TGGCCA 2 cut(s) 437, 1046
MspA1I CMGCKG 1 cut(s) 1167
MspI CCGG 3 cut(s) 660, 1113, 1803
MspR9I CCNGG 9 cut(s) 101, 661, 685, 806, 877, 899, 1048, 1433, 1444
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 8 cut(s) 101, 685, 806, 877, 899, 1048, 1433, 1444
MvnI CGCG 5 cut(s) 395, 425, 1589, 1948, 2021
MwoI GCNNNNNNNGC 4 cut(s) 113, 596, 605, 1474
NarI GGCGCC 1 cut(s) 1754
NciI CCSGG 1 cut(s) 661
NcoI CCATGG 1 cut(s) 1306
NlaIV GGNNCC 5 cut(s) 415, 682, 709, 1163, 1755
NmuCI GTSAC 2 cut(s) 746, 826
NruI TCGCGA 2 cut(s) 395, 425
NspI RCATGY 1 cut(s) 1298
PceI AGGCCT 1 cut(s) 908
PciSI GCTCTTC 3 cut(s) 165, 348, 2158
PcsI WCGNNNNNNNCGW 3 cut(s) 426, 768, 1105
PdmI GAANNNNTTC 1 cut(s) 1083
PfeI GAWTC 5 cut(s) 400, 1217, 1675, 1849, 1913
PflFI GACNNNGTC 1 cut(s) 1898
PleI GAGTC 3 cut(s) 1414, 1915, 1985
PluTI GGCGCC 1 cut(s) 1757
PpsI GAGTC 3 cut(s) 1414, 1915, 1985
Ppu21I YACGTR 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 2153
Psp6I CCWGG 8 cut(s) 99, 683, 804, 875, 897, 1046, 1431, 1442
PspEI GGTNACC 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 8 cut(s) 99, 683, 804, 875, 897, 1046, 1431, 1442
PspN4I GGNNCC 5 cut(s) 415, 682, 709, 1163, 1755
PspPI GGNCC 3 cut(s) 241, 708, 1780
PstNI CAGNNNCTG 1 cut(s) 1400
PsuI RGATCY 7 cut(s) 413, 493, 1121, 1161, 1192, 1713, 1786
PsyI GACNNNGTC 1 cut(s) 1898
RruI TCGCGA 2 cut(s) 395, 425
RsaI GTAC 5 cut(s) 545, 586, 1037, 1176, 1390
RsaNI GTAC 5 cut(s) 544, 585, 1036, 1175, 1389
RseI CAYNNNNRTG 2 cut(s) 1140, 1811
SacI GAGCTC 1 cut(s) 2153
SalI GTCGAC 1 cut(s) 2086
SapI GCTCTTC 3 cut(s) 165, 348, 2158
SaqAI TTAA 3 cut(s) 480, 1698, 1727
Sau96I GGNCC 3 cut(s) 241, 708, 1780
SchI GAGTC 3 cut(s) 1415, 1915, 1985
ScrFI CCNGG 9 cut(s) 101, 661, 685, 806, 877, 899, 1048, 1433, 1444
SduI GDGCHC 5 cut(s) 298, 515, 768, 1267, 2153
SexAI ACCWGGT 1 cut(s) 804
SfaNI GCATC 3 cut(s) 102, 617, 1815
SfoI GGCGCC 1 cut(s) 1755
SinI GGWCC 2 cut(s) 241, 1780
SmiMI CAYNNNNRTG 2 cut(s) 1140, 1811
SmlI CTYRAG 2 cut(s) 284, 1499
SmoI CTYRAG 2 cut(s) 284, 1499
Sse9I AATT 3 cut(s) 196, 314, 1301
SseBI AGGCCT 1 cut(s) 908
SspDI GGCGCC 1 cut(s) 1753
SstI GAGCTC 1 cut(s) 2153
StuI AGGCCT 1 cut(s) 908
StyD4I CCNGG 9 cut(s) 99, 659, 683, 804, 875, 897, 1046, 1431, 1442
StyI CCWWGG 4 cut(s) 952, 1306, 1985, 2202
TaaI ACNGT 7 cut(s) 245, 746, 856, 929, 1040, 1736, 1964
TaiI ACGT 6 cut(s) 89, 423, 765, 1551, 1824, 2093
TaqI TCGA 6 cut(s) 25, 801, 1001, 1032, 1108, 2087
TaqII GACCGA 2 cut(s) 262, 443
TasI AATT 3 cut(s) 196, 314, 1301
TatI WGTACW 4 cut(s) 543, 584, 1035, 1388
TauI GCSGC 6 cut(s) 178, 206, 579, 608, 1589, 2050
TfiI GAWTC 5 cut(s) 400, 1217, 1675, 1849, 1913
Tru1I TTAA 3 cut(s) 480, 1698, 1727
Tru9I TTAA 3 cut(s) 480, 1698, 1727
TscAI CASTG 6 cut(s) 751, 861, 1045, 1969, 2088, 2180
TseFI GTSAC 2 cut(s) 746, 826
TseI GCWGC 7 cut(s) 107, 833, 1151, 1331, 1633, 1766, 1769
Tsp45I GTSAC 2 cut(s) 746, 826
TspDTI ATGAA 6 cut(s) 236, 341, 705, 717, 1578, 1590
TspGWI ACGGA 1 cut(s) 765
TspRI CASTG 6 cut(s) 751, 861, 1045, 1969, 2088, 2180
Tth111I GACNNNGTC 1 cut(s) 1898
VneI GTGCAC 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 241, 1780
XagI CCTNNNNNAGG 3 cut(s) 236, 458, 902
XapI RAATTY 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 1298
XcmI CCANNNNNNNNNTGG 2 cut(s) 1017, 2180
XmaJI CCTAGG 1 cut(s) 952
XmiI GTMKAC 3 cut(s) 1959, 2087, 2117
XmnI GAANNNNTTC 1 cut(s) 1083
ZraI GACGTC 1 cut(s) 2091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.