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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 222 |
| AfaI | GTAC | 1 cut(s) | 128 |
| AflIII | ACRYGT | 1 cut(s) | 123 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 36 |
| AhlI | ACTAGT | 1 cut(s) | 196 |
| AluBI | AGCT | 3 cut(s) | 71, 86, 115 |
| AluI | AGCT | 3 cut(s) | 71, 86, 115 |
| Alw26I | GTCTC | 1 cut(s) | 44 |
| Ama87I | CYCGRG | 1 cut(s) | 41 |
| ApeKI | GCWGC | 3 cut(s) | 13, 86, 148 |
| ApoI | RAATTY | 1 cut(s) | 222 |
| AspS9I | GGNCC | 1 cut(s) | 30 |
| AsuC2I | CCSGG | 2 cut(s) | 28, 100 |
| AsuNHI | GCTAGC | 1 cut(s) | 115 |
| AvaI | CYCGRG | 1 cut(s) | 41 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BbvI | GCAGC | 3 cut(s) | 25, 73, 135 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 71, 105 |
| BcnI | CCSGG | 2 cut(s) | 28, 100 |
| BcoDI | GTCTC | 1 cut(s) | 44 |
| BcuI | ACTAGT | 1 cut(s) | 196 |
| BfaI | CTAG | 4 cut(s) | 116, 137, 197, 244 |
| BisI | GCNGC | 3 cut(s) | 14, 87, 149 |
| BlsI | GCNGC | 3 cut(s) | 15, 88, 150 |
| Bme1390I | CCNGG | 2 cut(s) | 28, 100 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 36 |
| BmeT110I | CYCGRG | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 1 cut(s) | 30 |
| BmiI | GGNNCC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 2 cut(s) | 28, 100 |
| BmsI | GCATC | 1 cut(s) | 123 |
| BmtI | GCTAGC | 1 cut(s) | 119 |
| BpuMI | CCSGG | 2 cut(s) | 28, 100 |
| BsaJI | CCNNGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 1 cut(s) | 26 |
| BseXI | GCAGC | 3 cut(s) | 25, 73, 135 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKCI | CYCGRG | 1 cut(s) | 41 |
| BsiSI | CCGG | 2 cut(s) | 28, 99 |
| BsmAI | GTCTC | 1 cut(s) | 44 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 41 |
| Bsp1407I | TGTACA | 1 cut(s) | 126 |
| BspLI | GGNNCC | 1 cut(s) | 232 |
| BspOI | GCTAGC | 1 cut(s) | 119 |
| BsrGI | TGTACA | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 61 |
| Bst6I | CTCTTC | 1 cut(s) | 12 |
| BstAUI | TGTACA | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 3 cut(s) | 84, 91, 117 |
| BstMAI | GTCTC | 1 cut(s) | 44 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 116 |
| BstNSI | RCATGY | 1 cut(s) | 127 |
| BstSCI | CCNGG | 2 cut(s) | 26, 98 |
| BstV1I | GCAGC | 3 cut(s) | 25, 73, 135 |
| Cac8I | GCNNGC | 3 cut(s) | 84, 91, 117 |
| Cfr13I | GGNCC | 1 cut(s) | 30 |
| Csp6I | GTAC | 1 cut(s) | 127 |
| CviAII | CATG | 3 cut(s) | 124, 130, 181 |
| CviJI | RGCY | 7 cut(s) | 16, 66, 71, 86, 115, 148, 233 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 66, 71, 86, 115, 148, 233 |
| CviQI | GTAC | 1 cut(s) | 127 |
| DriI | GACNNNNNGTC | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 1 cut(s) | 12 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 36 |
| EarI | CTCTTC | 1 cut(s) | 12 |
| Eco32I | GATATC | 1 cut(s) | 241 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| Eco88I | CYCGRG | 1 cut(s) | 41 |
| EcoRV | GATATC | 1 cut(s) | 241 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 3 cut(s) | 127, 133, 184 |
| FaiI | YATR | 4 cut(s) | 121, 125, 131, 182 |
| FatI | CATG | 3 cut(s) | 123, 129, 180 |
| Fnu4HI | GCNGC | 3 cut(s) | 14, 87, 149 |
| Fsp4HI | GCNGC | 3 cut(s) | 14, 87, 149 |
| FspBI | CTAG | 4 cut(s) | 116, 137, 197, 244 |
| GluI | GCNGC | 3 cut(s) | 14, 87, 149 |
| HapII | CCGG | 2 cut(s) | 28, 99 |
| Hin1II | CATG | 3 cut(s) | 127, 133, 184 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 2 cut(s) | 28, 99 |
| Hpy188III | TCNNGA | 1 cut(s) | 228 |
| HpyAV | CCTTC | 1 cut(s) | 41 |
| HpyCH4III | ACNGT | 1 cut(s) | 61 |
| HpyCH4V | TGCA | 1 cut(s) | 82 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 116 |
| Hsp92II | CATG | 3 cut(s) | 127, 133, 184 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 2 cut(s) | 41, 112 |
| Lsp1109I | GCAGC | 3 cut(s) | 25, 73, 135 |
| LweI | GCATC | 1 cut(s) | 123 |
| MaeI | CTAG | 4 cut(s) | 116, 137, 197, 244 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MluCI | AATT | 2 cut(s) | 203, 222 |
| MnlI | CCTC | 1 cut(s) | 100 |
| MslI | CAYNNNNRTG | 1 cut(s) | 128 |
| MspI | CCGG | 2 cut(s) | 28, 99 |
| MspR9I | CCNGG | 2 cut(s) | 28, 100 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 116 |
| NciI | CCSGG | 2 cut(s) | 28, 100 |
| NheI | GCTAGC | 1 cut(s) | 115 |
| NlaIII | CATG | 3 cut(s) | 127, 133, 184 |
| NlaIV | GGNNCC | 1 cut(s) | 232 |
| NmeAIII | GCCGAG | 1 cut(s) | 243 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 127 |
| PciI | ACATGT | 1 cut(s) | 123 |
| PkrI | GCNGC | 3 cut(s) | 15, 88, 150 |
| PscI | ACATGT | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 1 cut(s) | 232 |
| PspPI | GGNCC | 1 cut(s) | 30 |
| RsaI | GTAC | 1 cut(s) | 128 |
| RsaNI | GTAC | 1 cut(s) | 127 |
| RseI | CAYNNNNRTG | 1 cut(s) | 128 |
| SatI | GCNGC | 3 cut(s) | 14, 87, 149 |
| Sau96I | GGNCC | 1 cut(s) | 30 |
| ScrFI | CCNGG | 2 cut(s) | 28, 100 |
| SetI | ASST | 3 cut(s) | 73, 88, 117 |
| SfaNI | GCATC | 1 cut(s) | 123 |
| SinI | GGWCC | 1 cut(s) | 30 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 128 |
| SpeI | ACTAGT | 1 cut(s) | 196 |
| Sse9I | AATT | 2 cut(s) | 203, 222 |
| SspMI | CTAG | 4 cut(s) | 116, 137, 197, 244 |
| StyD4I | CCNGG | 2 cut(s) | 26, 98 |
| TaaI | ACNGT | 1 cut(s) | 61 |
| TaqI | TCGA | 2 cut(s) | 56, 201 |
| TasI | AATT | 2 cut(s) | 203, 222 |
| TatI | WGTACW | 1 cut(s) | 126 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| TseI | GCWGC | 3 cut(s) | 13, 86, 148 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 1 cut(s) | 222 |
| XceI | RCATGY | 1 cut(s) | 127 |
| XspI | CTAG | 4 cut(s) | 116, 137, 197, 244 |