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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 396 |
| AccI | GTMKAC | 2 cut(s) | 142, 172 |
| AccII | CGCG | 2 cut(s) | 78, 504 |
| AciI | CCGC | 5 cut(s) | 76, 133, 194, 368, 502 |
| AcoI | YGGCCR | 1 cut(s) | 398 |
| AfaI | GTAC | 1 cut(s) | 16 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 235, 396, 466, 492, 522 |
| AgsI | TTSAA | 3 cut(s) | 62, 71, 213 |
| AluBI | AGCT | 3 cut(s) | 207, 395, 476 |
| AluI | AGCT | 3 cut(s) | 207, 395, 476 |
| Alw21I | GWGCWC | 1 cut(s) | 209 |
| Alw26I | GTCTC | 2 cut(s) | 322, 564 |
| Ama87I | CYCGRG | 1 cut(s) | 516 |
| AoxI | GGCC | 2 cut(s) | 345, 398 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| AspLEI | GCGC | 1 cut(s) | 506 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AsuC2I | CCSGG | 2 cut(s) | 517, 518 |
| AsuHPI | GGTGA | 1 cut(s) | 446 |
| AsuII | TTCGAA | 2 cut(s) | 27, 376 |
| AvaI | CYCGRG | 1 cut(s) | 516 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BalI | TGGCCA | 1 cut(s) | 400 |
| BanII | GRGCYC | 2 cut(s) | 209, 390 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 2 cut(s) | 78, 432 |
| Bbv12I | GWGCWC | 1 cut(s) | 209 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 3 cut(s) | 160, 161, 299 |
| BceAI | ACGGC | 1 cut(s) | 360 |
| BclI | TGATCA | 1 cut(s) | 283 |
| BcnI | CCSGG | 2 cut(s) | 517, 518 |
| BcoDI | GTCTC | 2 cut(s) | 322, 564 |
| BfaI | CTAG | 4 cut(s) | 270, 312, 383, 574 |
| BisI | GCNGC | 2 cut(s) | 5, 502 |
| BlsI | GCNGC | 2 cut(s) | 6, 503 |
| Bme1390I | CCNGG | 2 cut(s) | 517, 518 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmeT110I | CYCGRG | 1 cut(s) | 516 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BmiI | GGNNCC | 1 cut(s) | 449 |
| BmrFI | CCNGG | 2 cut(s) | 517, 518 |
| BpiI | GAAGAC | 2 cut(s) | 78, 432 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| Bpu14I | TTCGAA | 2 cut(s) | 27, 376 |
| BpuEI | CTTGAG | 1 cut(s) | 575 |
| BpuMI | CCSGG | 2 cut(s) | 517, 518 |
| BsaJI | CCNNGG | 3 cut(s) | 42, 259, 516 |
| BsaWI | WCCGGW | 2 cut(s) | 118, 431 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 235, 396, 466, 492, 522 |
| BseDI | CCNNGG | 3 cut(s) | 42, 259, 516 |
| BseGI | GGATG | 2 cut(s) | 145, 565 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 235, 396, 466, 492, 522 |
| BseRI | GAGGAG | 1 cut(s) | 340 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| Bsh1236I | CGCG | 2 cut(s) | 78, 504 |
| BshFI | GGCC | 2 cut(s) | 347, 400 |
| BsiHKAI | GWGCWC | 1 cut(s) | 209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 516 |
| BsiSI | CCGG | 4 cut(s) | 119, 229, 432, 517 |
| BslFI | GGGAC | 1 cut(s) | 60 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 235, 396, 466, 492, 522 |
| BsmAI | GTCTC | 2 cut(s) | 322, 564 |
| BsmBI | CGTCTC | 1 cut(s) | 322 |
| BsmFI | GGGAC | 1 cut(s) | 60 |
| BsnI | GGCC | 2 cut(s) | 347, 400 |
| BsoBI | CYCGRG | 1 cut(s) | 516 |
| Bsp119I | TTCGAA | 2 cut(s) | 27, 376 |
| Bsp1286I | GDGCHC | 2 cut(s) | 209, 390 |
| Bsp143I | GATC | 2 cut(s) | 272, 283 |
| BspACI | CCGC | 5 cut(s) | 76, 133, 194, 368, 502 |
| BspANI | GGCC | 2 cut(s) | 347, 400 |
| BspFNI | CGCG | 2 cut(s) | 78, 504 |
| BspLI | GGNNCC | 1 cut(s) | 449 |
| BspQI | GCTCTTC | 1 cut(s) | 214 |
| BspT104I | TTCGAA | 2 cut(s) | 27, 376 |
| BssECI | CCNNGG | 3 cut(s) | 42, 259, 516 |
| BssMI | GATC | 2 cut(s) | 272, 283 |
| BssNAI | GTATAC | 1 cut(s) | 173 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 2 cut(s) | 42, 259 |
| Bst1107I | GTATAC | 1 cut(s) | 173 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 2 cut(s) | 21, 333 |
| Bst6I | CTCTTC | 3 cut(s) | 212, 214, 310 |
| BstBI | TTCGAA | 2 cut(s) | 27, 376 |
| BstF5I | GGATG | 2 cut(s) | 145, 565 |
| BstFNI | CGCG | 2 cut(s) | 78, 504 |
| BstHHI | GCGC | 1 cut(s) | 506 |
| BstKTI | GATC | 2 cut(s) | 275, 286 |
| BstMAI | GTCTC | 2 cut(s) | 322, 564 |
| BstMBI | GATC | 2 cut(s) | 272, 283 |
| BstSCI | CCNGG | 2 cut(s) | 515, 516 |
| BstUI | CGCG | 2 cut(s) | 78, 504 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 2 cut(s) | 78, 432 |
| BstZ17I | GTATAC | 1 cut(s) | 173 |
| BsuRI | GGCC | 2 cut(s) | 347, 400 |
| BtgZI | GCGATG | 1 cut(s) | 277 |
| BtsCI | GGATG | 2 cut(s) | 145, 565 |
| CfoI | GCGC | 1 cut(s) | 506 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| Cfr9I | CCCGGG | 1 cut(s) | 516 |
| Csp6I | GTAC | 1 cut(s) | 15 |
| CviAII | CATG | 1 cut(s) | 415 |
| CviQI | GTAC | 1 cut(s) | 15 |
| DpnI | GATC | 2 cut(s) | 274, 285 |
| DpnII | GATC | 2 cut(s) | 272, 283 |
| EaeI | YGGCCR | 1 cut(s) | 398 |
| Eam1104I | CTCTTC | 3 cut(s) | 212, 214, 310 |
| EarI | CTCTTC | 3 cut(s) | 212, 214, 310 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Ecl136II | GAGCTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 2 cut(s) | 42, 259 |
| Eco24I | GRGCYC | 2 cut(s) | 209, 390 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 1 cut(s) | 207 |
| Eco88I | CYCGRG | 1 cut(s) | 516 |
| EcoICRI | GAGCTC | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 2 cut(s) | 42, 259 |
| EcoT38I | GRGCYC | 2 cut(s) | 209, 390 |
| ErhI | CCWWGG | 2 cut(s) | 42, 259 |
| Esp3I | CGTCTC | 1 cut(s) | 322 |
| FaeI | CATG | 1 cut(s) | 418 |
| FaiI | YATR | 3 cut(s) | 173, 416, 479 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 243, 275 |
| FaqI | GGGAC | 1 cut(s) | 60 |
| FatI | CATG | 1 cut(s) | 414 |
| FauI | CCCGC | 1 cut(s) | 375 |
| FbaI | TGATCA | 1 cut(s) | 283 |
| FblI | GTMKAC | 2 cut(s) | 142, 172 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 502 |
| FokI | GGATG | 2 cut(s) | 132, 552 |
| FriOI | GRGCYC | 2 cut(s) | 209, 390 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 502 |
| FspBI | CTAG | 4 cut(s) | 270, 312, 383, 574 |
| GlaI | GCGC | 1 cut(s) | 505 |
| GluI | GCNGC | 2 cut(s) | 5, 502 |
| HaeIII | GGCC | 2 cut(s) | 347, 400 |
| HapII | CCGG | 4 cut(s) | 119, 229, 432, 517 |
| HhaI | GCGC | 1 cut(s) | 506 |
| Hin1II | CATG | 1 cut(s) | 418 |
| Hin6I | GCGC | 1 cut(s) | 504 |
| HinP1I | GCGC | 1 cut(s) | 504 |
| HincII | GTYRAC | 1 cut(s) | 143 |
| HindII | GTYRAC | 1 cut(s) | 143 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 6 cut(s) | 48, 357, 428, 482, 540, 557 |
| HpaII | CCGG | 4 cut(s) | 119, 229, 432, 517 |
| HphI | GGTGA | 1 cut(s) | 446 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 143, 173 |
| Hpy188III | TCNNGA | 1 cut(s) | 312 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 143, 173 |
| Hpy99I | CGWCG | 1 cut(s) | 494 |
| HpyAV | CCTTC | 5 cut(s) | 46, 81, 154, 178, 530 |
| HpyCH4III | ACNGT | 2 cut(s) | 21, 333 |
| HpyCH4IV | ACGT | 1 cut(s) | 489 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 565 |
| HpySE526I | ACGT | 1 cut(s) | 489 |
| Hsp92II | CATG | 1 cut(s) | 418 |
| HspAI | GCGC | 1 cut(s) | 504 |
| Ksp22I | TGATCA | 1 cut(s) | 283 |
| Kzo9I | GATC | 2 cut(s) | 272, 283 |
| LguI | GCTCTTC | 1 cut(s) | 214 |
| LmnI | GCTCC | 1 cut(s) | 447 |
| LpnPI | CCDG | 4 cut(s) | 132, 242, 445, 530 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| MaeI | CTAG | 4 cut(s) | 270, 312, 383, 574 |
| MaeII | ACGT | 1 cut(s) | 489 |
| MalI | GATC | 2 cut(s) | 274, 285 |
| MboI | GATC | 2 cut(s) | 272, 283 |
| MboII | GAAGA | 7 cut(s) | 83, 96, 193, 201, 229, 327, 437 |
| MfeI | CAATTG | 1 cut(s) | 464 |
| MhlI | GDGCHC | 2 cut(s) | 209, 390 |
| MlsI | TGGCCA | 1 cut(s) | 400 |
| MluCI | AATT | 2 cut(s) | 297, 464 |
| MluNI | TGGCCA | 1 cut(s) | 400 |
| MlyI | GAGTC | 3 cut(s) | 42, 422, 566 |
| MmeI | TCCRAC | 2 cut(s) | 315, 510 |
| Mox20I | TGGCCA | 1 cut(s) | 400 |
| MscI | TGGCCA | 1 cut(s) | 400 |
| Msp20I | TGGCCA | 1 cut(s) | 400 |
| MspI | CCGG | 4 cut(s) | 119, 229, 432, 517 |
| MspR9I | CCNGG | 2 cut(s) | 517, 518 |
| MunI | CAATTG | 1 cut(s) | 464 |
| MvnI | CGCG | 2 cut(s) | 78, 504 |
| NciI | CCSGG | 2 cut(s) | 517, 518 |
| NdeII | GATC | 2 cut(s) | 272, 283 |
| NlaIII | CATG | 1 cut(s) | 418 |
| NlaIV | GGNNCC | 1 cut(s) | 449 |
| NspV | TTCGAA | 2 cut(s) | 27, 376 |
| PciSI | GCTCTTC | 1 cut(s) | 214 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 300 |
| PfeI | GAWTC | 3 cut(s) | 357, 482, 540 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 396 |
| PkrI | GCNGC | 2 cut(s) | 6, 503 |
| PleI | GAGTC | 3 cut(s) | 42, 422, 565 |
| PpsI | GAGTC | 3 cut(s) | 42, 422, 565 |
| Psp124BI | GAGCTC | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 1 cut(s) | 449 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 16 |
| RsaNI | GTAC | 1 cut(s) | 15 |
| SacI | GAGCTC | 1 cut(s) | 209 |
| SalI | GTCGAC | 1 cut(s) | 141 |
| SapI | GCTCTTC | 1 cut(s) | 214 |
| SatI | GCNGC | 2 cut(s) | 5, 502 |
| Sau3AI | GATC | 2 cut(s) | 272, 283 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| SchI | GAGTC | 3 cut(s) | 42, 422, 566 |
| ScrFI | CCNGG | 2 cut(s) | 517, 518 |
| SduI | GDGCHC | 2 cut(s) | 209, 390 |
| SetI | ASST | 8 cut(s) | 126, 209, 240, 261, 311, 397, 478, 492 |
| SfuI | TTCGAA | 2 cut(s) | 27, 376 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmaI | CCCGGG | 1 cut(s) | 518 |
| SmlI | CTYRAG | 1 cut(s) | 554 |
| SmoI | CTYRAG | 1 cut(s) | 554 |
| Sse9I | AATT | 2 cut(s) | 297, 464 |
| SsiI | CCGC | 5 cut(s) | 76, 133, 194, 368, 502 |
| SspMI | CTAG | 4 cut(s) | 270, 312, 383, 574 |
| SstI | GAGCTC | 1 cut(s) | 209 |
| StyD4I | CCNGG | 2 cut(s) | 515, 516 |
| StyI | CCWWGG | 2 cut(s) | 42, 259 |
| TaaI | ACNGT | 2 cut(s) | 21, 333 |
| TaiI | ACGT | 1 cut(s) | 492 |
| TaqI | TCGA | 5 cut(s) | 27, 142, 323, 376, 543 |
| TasI | AATT | 2 cut(s) | 297, 464 |
| TatI | WGTACW | 1 cut(s) | 14 |
| TauI | GCSGC | 1 cut(s) | 504 |
| TfiI | GAWTC | 3 cut(s) | 357, 482, 540 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspMI | CCCGGG | 1 cut(s) | 516 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 396 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XbaI | TCTAGA | 1 cut(s) | 311 |
| XmaI | CCCGGG | 1 cut(s) | 516 |
| XmiI | GTMKAC | 2 cut(s) | 142, 172 |
| XspI | CTAG | 4 cut(s) | 270, 312, 383, 574 |