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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1133 |
| Acc36I | ACCTGC | 2 cut(s) | 569, 656 |
| AccB1I | GGYRCC | 1 cut(s) | 1022 |
| AccI | GTMKAC | 1 cut(s) | 1124 |
| AccII | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| AccIII | TCCGGA | 1 cut(s) | 505 |
| AciI | CCGC | 8 cut(s) | 202, 400, 576, 651, 876, 936, 1070, 1099 |
| AclWI | GGATC | 3 cut(s) | 606, 758, 771 |
| AcoI | YGGCCR | 2 cut(s) | 423, 790 |
| AfaI | GTAC | 3 cut(s) | 815, 819, 1146 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1087 |
| AgsI | TTSAA | 5 cut(s) | 71, 236, 727, 748, 950 |
| AjnI | CCWGG | 2 cut(s) | 991, 1137 |
| AleI | CACNNNNGTG | 1 cut(s) | 461 |
| AluBI | AGCT | 4 cut(s) | 755, 869, 1043, 1157 |
| AluI | AGCT | 4 cut(s) | 755, 869, 1043, 1157 |
| Alw26I | GTCTC | 3 cut(s) | 115, 178, 311 |
| AlwI | GGATC | 3 cut(s) | 606, 758, 771 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 872 |
| Aor13HI | TCCGGA | 1 cut(s) | 505 |
| AoxI | GGCC | 4 cut(s) | 423, 790, 903, 1140 |
| ApeKI | GCWGC | 1 cut(s) | 1084 |
| AspLEI | GCGC | 3 cut(s) | 232, 412, 917 |
| AsuC2I | CCSGG | 1 cut(s) | 149 |
| AsuHPI | GGTGA | 2 cut(s) | 9, 128 |
| AsuNHI | GCTAGC | 1 cut(s) | 587 |
| BaeGI | GKGCMC | 1 cut(s) | 38 |
| BalI | TGGCCA | 2 cut(s) | 425, 792 |
| BamHI | GGATCC | 1 cut(s) | 763 |
| BanI | GGYRCC | 1 cut(s) | 1022 |
| BbsI | GAAGAC | 2 cut(s) | 662, 845 |
| BbvCI | CCTCAGC | 1 cut(s) | 865 |
| BbvI | GCAGC | 1 cut(s) | 1096 |
| BccI | CCATC | 4 cut(s) | 83, 674, 805, 956 |
| BceAI | ACGGC | 1 cut(s) | 1127 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1142 |
| BciT130I | CCWGG | 2 cut(s) | 993, 1139 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BcnI | CCSGG | 1 cut(s) | 149 |
| BcoDI | GTCTC | 3 cut(s) | 115, 178, 311 |
| BfaI | CTAG | 6 cut(s) | 107, 170, 335, 588, 692, 1165 |
| BfmI | CTRYAG | 3 cut(s) | 459, 627, 955 |
| BfoI | RGCGCY | 1 cut(s) | 233 |
| BfuAI | ACCTGC | 2 cut(s) | 569, 656 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BglII | AGATCT | 2 cut(s) | 81, 615 |
| BisI | GCNGC | 2 cut(s) | 576, 1085 |
| BlsI | GCNGC | 2 cut(s) | 577, 1086 |
| Bme1390I | CCNGG | 3 cut(s) | 149, 993, 1139 |
| BmiI | GGNNCC | 3 cut(s) | 57, 765, 1024 |
| BmrFI | CCNGG | 3 cut(s) | 149, 993, 1139 |
| BmsI | GCATC | 1 cut(s) | 907 |
| BmtI | GCTAGC | 1 cut(s) | 591 |
| BpiI | GAAGAC | 2 cut(s) | 662, 845 |
| BpmI | CTGGAG | 2 cut(s) | 372, 1064 |
| Bpu10I | CCTNAGC | 1 cut(s) | 865 |
| BpuMI | CCSGG | 1 cut(s) | 149 |
| BsaAI | YACGTR | 1 cut(s) | 817 |
| BsaJI | CCNNGG | 3 cut(s) | 278, 699, 778 |
| BsaWI | WCCGGW | 2 cut(s) | 505, 800 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1087 |
| Bse118I | RCCGGY | 1 cut(s) | 1019 |
| Bse1I | ACTGG | 3 cut(s) | 164, 389, 877 |
| BseAI | TCCGGA | 1 cut(s) | 505 |
| BseBI | CCWGG | 2 cut(s) | 993, 1139 |
| BseDI | CCNNGG | 3 cut(s) | 278, 699, 778 |
| BseGI | GGATG | 4 cut(s) | 13, 94, 685, 797 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1087 |
| BseMII | CTCAG | 2 cut(s) | 513, 879 |
| BseNI | ACTGG | 3 cut(s) | 164, 389, 877 |
| BseRI | GAGGAG | 1 cut(s) | 166 |
| BseSI | GKGCMC | 1 cut(s) | 38 |
| BseXI | GCAGC | 1 cut(s) | 1096 |
| BsgI | GTGCAG | 1 cut(s) | 256 |
| Bsh1236I | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| Bsh1285I | CGRYCG | 1 cut(s) | 156 |
| BshFI | GGCC | 4 cut(s) | 425, 792, 905, 1142 |
| BshNI | GGYRCC | 1 cut(s) | 1022 |
| BsiEI | CGRYCG | 1 cut(s) | 156 |
| BsiSI | CCGG | 4 cut(s) | 149, 506, 801, 1020 |
| BslFI | GGGAC | 3 cut(s) | 269, 934, 979 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1087 |
| BsmAI | GTCTC | 3 cut(s) | 115, 178, 311 |
| BsmFI | GGGAC | 3 cut(s) | 269, 934, 979 |
| BsmI | GAATGC | 1 cut(s) | 402 |
| BsnI | GGCC | 4 cut(s) | 425, 792, 905, 1142 |
| Bsp1286I | GDGCHC | 1 cut(s) | 38 |
| Bsp13I | TCCGGA | 1 cut(s) | 505 |
| Bsp143I | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| Bsp68I | TCGCGA | 1 cut(s) | 181 |
| BspACI | CCGC | 8 cut(s) | 202, 400, 576, 651, 876, 936, 1070, 1099 |
| BspANI | GGCC | 4 cut(s) | 425, 792, 905, 1142 |
| BspCNI | CTCAG | 2 cut(s) | 514, 878 |
| BspEI | TCCGGA | 1 cut(s) | 505 |
| BspFNI | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| BspLI | GGNNCC | 3 cut(s) | 57, 765, 1024 |
| BspMI | ACCTGC | 2 cut(s) | 569, 656 |
| BspOI | GCTAGC | 1 cut(s) | 591 |
| BspPI | GGATC | 3 cut(s) | 606, 758, 771 |
| BspT107I | GGYRCC | 1 cut(s) | 1022 |
| BsrFI | RCCGGY | 1 cut(s) | 1019 |
| BsrI | ACTGG | 3 cut(s) | 164, 389, 877 |
| BssAI | RCCGGY | 1 cut(s) | 1019 |
| BssECI | CCNNGG | 3 cut(s) | 278, 699, 778 |
| BssMI | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| BssT1I | CCWWGG | 1 cut(s) | 778 |
| Bst2UI | CCWGG | 2 cut(s) | 993, 1139 |
| Bst4CI | ACNGT | 5 cut(s) | 128, 157, 191, 418, 451 |
| Bst6I | CTCTTC | 1 cut(s) | 1050 |
| BstBAI | YACGTR | 1 cut(s) | 817 |
| BstDEI | CTNAG | 2 cut(s) | 522, 865 |
| BstF5I | GGATG | 4 cut(s) | 13, 94, 685, 797 |
| BstFNI | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| BstH2I | RGCGCY | 1 cut(s) | 233 |
| BstHHI | GCGC | 3 cut(s) | 232, 412, 917 |
| BstKTI | GATC | 7 cut(s) | 84, 144, 543, 601, 618, 766, 1032 |
| BstMAI | GTCTC | 3 cut(s) | 115, 178, 311 |
| BstMBI | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| BstMCI | CGRYCG | 1 cut(s) | 156 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 62, 566, 575, 584, 692, 789 |
| BstNI | CCWGG | 2 cut(s) | 993, 1139 |
| BstNSI | RCATGY | 2 cut(s) | 575, 1112 |
| BstSCI | CCNGG | 3 cut(s) | 147, 991, 1137 |
| BstSFI | CTRYAG | 3 cut(s) | 459, 627, 955 |
| BstSLI | GKGCMC | 1 cut(s) | 38 |
| BstSNI | TACGTA | 1 cut(s) | 817 |
| BstUI | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| BstV1I | GCAGC | 1 cut(s) | 1096 |
| BstV2I | GAAGAC | 2 cut(s) | 662, 845 |
| BstX2I | RGATCY | 3 cut(s) | 81, 615, 763 |
| BstYI | RGATCY | 3 cut(s) | 81, 615, 763 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuRI | GGCC | 4 cut(s) | 425, 792, 905, 1142 |
| BtgZI | GCGATG | 1 cut(s) | 975 |
| BtsCI | GGATG | 4 cut(s) | 13, 94, 685, 797 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 447, 608 |
| BtuMI | TCGCGA | 1 cut(s) | 181 |
| BveI | ACCTGC | 2 cut(s) | 569, 656 |
| CaiI | CAGNNNCTG | 1 cut(s) | 872 |
| CfoI | GCGC | 3 cut(s) | 232, 412, 917 |
| Cfr10I | RCCGGY | 1 cut(s) | 1019 |
| CseI | GACGC | 2 cut(s) | 49, 642 |
| Csp6I | GTAC | 3 cut(s) | 814, 818, 1145 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 684, 719 |
| CviAII | CATG | 3 cut(s) | 572, 661, 1109 |
| CviQI | GTAC | 3 cut(s) | 814, 818, 1145 |
| DdeI | CTNAG | 2 cut(s) | 522, 865 |
| DpnI | GATC | 7 cut(s) | 83, 143, 542, 600, 617, 765, 1031 |
| DpnII | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| EaeI | YGGCCR | 2 cut(s) | 423, 790 |
| Eam1104I | CTCTTC | 1 cut(s) | 1050 |
| EarI | CTCTTC | 1 cut(s) | 1050 |
| EciI | GGCGGA | 1 cut(s) | 891 |
| Eco105I | TACGTA | 1 cut(s) | 817 |
| Eco130I | CCWWGG | 1 cut(s) | 778 |
| Eco147I | AGGCCT | 1 cut(s) | 905 |
| EcoRII | CCWGG | 2 cut(s) | 991, 1137 |
| EcoT14I | CCWWGG | 1 cut(s) | 778 |
| ErhI | CCWWGG | 1 cut(s) | 778 |
| FaeI | CATG | 3 cut(s) | 575, 664, 1112 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 469, 501, 602, 634 |
| FaqI | GGGAC | 3 cut(s) | 269, 934, 979 |
| FatI | CATG | 3 cut(s) | 571, 660, 1108 |
| FauI | CCCGC | 2 cut(s) | 943, 1106 |
| FblI | GTMKAC | 1 cut(s) | 1124 |
| Fnu4HI | GCNGC | 2 cut(s) | 576, 1085 |
| FokI | GGATG | 4 cut(s) | 20, 101, 692, 784 |
| Fsp4HI | GCNGC | 2 cut(s) | 576, 1085 |
| FspBI | CTAG | 6 cut(s) | 107, 170, 335, 588, 692, 1165 |
| GlaI | GCGC | 3 cut(s) | 231, 411, 916 |
| GluI | GCNGC | 2 cut(s) | 576, 1085 |
| GsuI | CTGGAG | 2 cut(s) | 372, 1064 |
| HaeII | RGCGCY | 1 cut(s) | 233 |
| HaeIII | GGCC | 4 cut(s) | 425, 792, 905, 1142 |
| HapII | CCGG | 4 cut(s) | 149, 506, 801, 1020 |
| HgaI | GACGC | 2 cut(s) | 49, 642 |
| HhaI | GCGC | 3 cut(s) | 232, 412, 917 |
| Hin1II | CATG | 3 cut(s) | 575, 664, 1112 |
| Hin6I | GCGC | 3 cut(s) | 230, 410, 915 |
| HinP1I | GCGC | 3 cut(s) | 230, 410, 915 |
| HincII | GTYRAC | 2 cut(s) | 454, 1125 |
| HindII | GTYRAC | 2 cut(s) | 454, 1125 |
| HindIII | AAGCTT | 1 cut(s) | 753 |
| HinfI | GANTC | 2 cut(s) | 319, 727 |
| HpaII | CCGG | 4 cut(s) | 149, 506, 801, 1020 |
| HphI | GGTGA | 2 cut(s) | 9, 128 |
| Hpy166II | GTNNAC | 2 cut(s) | 454, 1125 |
| Hpy188I | TCNGA | 5 cut(s) | 88, 495, 523, 553, 658 |
| Hpy188III | TCNNGA | 4 cut(s) | 180, 506, 983, 1033 |
| Hpy8I | GTNNAC | 2 cut(s) | 454, 1125 |
| Hpy99I | CGWCG | 3 cut(s) | 43, 269, 658 |
| HpyAV | CCTTC | 2 cut(s) | 503, 1112 |
| HpyCH4III | ACNGT | 5 cut(s) | 128, 157, 191, 418, 451 |
| HpyCH4IV | ACGT | 2 cut(s) | 816, 941 |
| HpyCH4V | TGCA | 5 cut(s) | 50, 273, 712, 1108, 1153 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 62, 566, 575, 584, 692, 789 |
| HpyF3I | CTNAG | 2 cut(s) | 522, 865 |
| HpySE526I | ACGT | 2 cut(s) | 816, 941 |
| Hsp92II | CATG | 3 cut(s) | 575, 664, 1112 |
| HspAI | GCGC | 3 cut(s) | 230, 410, 915 |
| Kpn2I | TCCGGA | 1 cut(s) | 505 |
| Kzo9I | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| LmnI | GCTCC | 2 cut(s) | 61, 512 |
| Lsp1109I | GCAGC | 1 cut(s) | 1096 |
| LweI | GCATC | 1 cut(s) | 907 |
| MaeI | CTAG | 6 cut(s) | 107, 170, 335, 588, 692, 1165 |
| MaeII | ACGT | 2 cut(s) | 816, 941 |
| MaeIII | GTNAC | 2 cut(s) | 391, 1072 |
| MalI | GATC | 7 cut(s) | 83, 143, 542, 600, 617, 765, 1031 |
| MboI | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| MboII | GAAGA | 7 cut(s) | 91, 248, 662, 731, 850, 852, 1067 |
| MflI | RGATCY | 3 cut(s) | 81, 615, 763 |
| MhlI | GDGCHC | 1 cut(s) | 38 |
| MlsI | TGGCCA | 2 cut(s) | 425, 792 |
| MluCI | AATT | 4 cut(s) | 13, 93, 722, 1128 |
| MluNI | TGGCCA | 2 cut(s) | 425, 792 |
| MlyI | GAGTC | 1 cut(s) | 313 |
| MmeI | TCCRAC | 2 cut(s) | 636, 1093 |
| Mox20I | TGGCCA | 2 cut(s) | 425, 792 |
| MroI | TCCGGA | 1 cut(s) | 505 |
| MscI | TGGCCA | 2 cut(s) | 425, 792 |
| MseI | TTAA | 1 cut(s) | 1062 |
| MslI | CAYNNNNRTG | 1 cut(s) | 461 |
| Msp20I | TGGCCA | 2 cut(s) | 425, 792 |
| MspA1I | CMGCKG | 1 cut(s) | 1070 |
| MspI | CCGG | 4 cut(s) | 149, 506, 801, 1020 |
| MspR9I | CCNGG | 3 cut(s) | 149, 993, 1139 |
| Mva1269I | GAATGC | 1 cut(s) | 402 |
| MvaI | CCWGG | 2 cut(s) | 993, 1139 |
| MvnI | CGCG | 6 cut(s) | 181, 410, 412, 653, 834, 1101 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 62, 566, 575, 584, 692, 789 |
| NciI | CCSGG | 1 cut(s) | 149 |
| NdeII | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| NheI | GCTAGC | 1 cut(s) | 587 |
| NlaIII | CATG | 3 cut(s) | 575, 664, 1112 |
| NlaIV | GGNNCC | 3 cut(s) | 57, 765, 1024 |
| NruI | TCGCGA | 1 cut(s) | 181 |
| NspI | RCATGY | 2 cut(s) | 575, 1112 |
| OliI | CACNNNNGTG | 1 cut(s) | 461 |
| PceI | AGGCCT | 1 cut(s) | 905 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 426 |
| PctI | GAATGC | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 727 |
| PflFI | GACNNNGTC | 1 cut(s) | 652 |
| PkrI | GCNGC | 2 cut(s) | 577, 1086 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| Ppu21I | YACGTR | 1 cut(s) | 817 |
| PsiI | TTATAA | 1 cut(s) | 1133 |
| Psp6I | CCWGG | 2 cut(s) | 991, 1137 |
| PspGI | CCWGG | 2 cut(s) | 991, 1137 |
| PspN4I | GGNNCC | 3 cut(s) | 57, 765, 1024 |
| PstNI | CAGNNNCTG | 1 cut(s) | 872 |
| PsuI | RGATCY | 3 cut(s) | 81, 615, 763 |
| PsyI | GACNNNGTC | 1 cut(s) | 652 |
| RruI | TCGCGA | 1 cut(s) | 181 |
| RsaI | GTAC | 3 cut(s) | 815, 819, 1146 |
| RsaNI | GTAC | 3 cut(s) | 814, 818, 1145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 461 |
| SalI | GTCGAC | 1 cut(s) | 1123 |
| SaqAI | TTAA | 1 cut(s) | 1062 |
| SatI | GCNGC | 2 cut(s) | 576, 1085 |
| Sau3AI | GATC | 7 cut(s) | 81, 141, 540, 598, 615, 763, 1029 |
| SchI | GAGTC | 1 cut(s) | 313 |
| ScrFI | CCNGG | 3 cut(s) | 149, 993, 1139 |
| SduI | GDGCHC | 1 cut(s) | 38 |
| SfaNI | GCATC | 1 cut(s) | 907 |
| SfcI | CTRYAG | 3 cut(s) | 459, 627, 955 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 461 |
| SnaBI | TACGTA | 1 cut(s) | 817 |
| Sse9I | AATT | 4 cut(s) | 13, 93, 722, 1128 |
| SseBI | AGGCCT | 1 cut(s) | 905 |
| SsiI | CCGC | 8 cut(s) | 202, 400, 576, 651, 876, 936, 1070, 1099 |
| SspMI | CTAG | 6 cut(s) | 107, 170, 335, 588, 692, 1165 |
| StuI | AGGCCT | 1 cut(s) | 905 |
| StyD4I | CCNGG | 3 cut(s) | 147, 991, 1137 |
| StyI | CCWWGG | 1 cut(s) | 778 |
| TaaI | ACNGT | 5 cut(s) | 128, 157, 191, 418, 451 |
| TaiI | ACGT | 2 cut(s) | 819, 944 |
| TaqI | TCGA | 4 cut(s) | 264, 908, 1011, 1124 |
| TasI | AATT | 4 cut(s) | 13, 93, 722, 1128 |
| TauI | GCSGC | 1 cut(s) | 578 |
| TfiI | GAWTC | 1 cut(s) | 727 |
| Tru1I | TTAA | 1 cut(s) | 1062 |
| Tru9I | TTAA | 1 cut(s) | 1062 |
| TscAI | CASTG | 3 cut(s) | 200, 454, 608 |
| TseI | GCWGC | 1 cut(s) | 1084 |
| TspDTI | ATGAA | 1 cut(s) | 255 |
| TspRI | CASTG | 3 cut(s) | 200, 454, 608 |
| Tth111I | GACNNNGTC | 1 cut(s) | 652 |
| XceI | RCATGY | 2 cut(s) | 575, 1112 |
| XmiI | GTMKAC | 1 cut(s) | 1124 |
| XspI | CTAG | 6 cut(s) | 107, 170, 335, 588, 692, 1165 |