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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 997 |
| Acc36I | ACCTGC | 2 cut(s) | 623, 710 |
| AccII | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AclWI | GGATC | 3 cut(s) | 660, 812, 825 |
| AcoI | YGGCCR | 1 cut(s) | 844 |
| AcuI | CTGAAG | 1 cut(s) | 965 |
| AfaI | GTAC | 2 cut(s) | 613, 869 |
| AgsI | TTSAA | 3 cut(s) | 182, 781, 1079 |
| AleI | CACNNNNGTG | 1 cut(s) | 530 |
| AluBI | AGCT | 5 cut(s) | 339, 412, 809, 837, 923 |
| AluI | AGCT | 5 cut(s) | 339, 412, 809, 837, 923 |
| Alw21I | GWGCWC | 1 cut(s) | 162 |
| Alw26I | GTCTC | 4 cut(s) | 19, 82, 256, 1018 |
| AlwI | GGATC | 3 cut(s) | 660, 812, 825 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 926 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| AoxI | GGCC | 3 cut(s) | 492, 844, 1032 |
| ApeKI | GCWGC | 1 cut(s) | 932 |
| AspLEI | GCGC | 4 cut(s) | 359, 740, 932, 1046 |
| AsuHPI | GGTGA | 3 cut(s) | 32, 411, 443 |
| AsuNHI | GCTAGC | 1 cut(s) | 641 |
| BaeGI | GKGCMC | 1 cut(s) | 1011 |
| BalI | TGGCCA | 1 cut(s) | 846 |
| BamHI | GGATCC | 1 cut(s) | 817 |
| BbsI | GAAGAC | 1 cut(s) | 716 |
| Bbv12I | GWGCWC | 1 cut(s) | 162 |
| BbvCI | CCTCAGC | 1 cut(s) | 919 |
| BbvI | GCAGC | 1 cut(s) | 919 |
| BccI | CCATC | 2 cut(s) | 728, 859 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 75, 109, 139, 173 |
| BcoDI | GTCTC | 4 cut(s) | 19, 82, 256, 1018 |
| BfaI | CTAG | 4 cut(s) | 11, 74, 642, 746 |
| BfmI | CTRYAG | 2 cut(s) | 340, 528 |
| BfoI | RGCGCY | 2 cut(s) | 741, 933 |
| BfuAI | ACCTGC | 2 cut(s) | 623, 710 |
| BglII | AGATCT | 1 cut(s) | 669 |
| BisI | GCNGC | 3 cut(s) | 630, 875, 933 |
| BlsI | GCNGC | 3 cut(s) | 631, 876, 934 |
| BmcAI | AGTACT | 1 cut(s) | 613 |
| BmiI | GGNNCC | 2 cut(s) | 291, 819 |
| BmrI | ACTGGG | 1 cut(s) | 444 |
| BmsI | GCATC | 2 cut(s) | 46, 716 |
| BmtI | GCTAGC | 1 cut(s) | 645 |
| BmuI | ACTGGG | 1 cut(s) | 444 |
| BpiI | GAAGAC | 1 cut(s) | 716 |
| BpmI | CTGGAG | 1 cut(s) | 319 |
| Bpu10I | CCTNAGC | 2 cut(s) | 833, 919 |
| BsaAI | YACGTR | 1 cut(s) | 871 |
| BsaBI | GATNNNNATC | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| BsaWI | WCCGGW | 2 cut(s) | 574, 854 |
| Bse1I | ACTGG | 6 cut(s) | 5, 68, 97, 285, 439, 931 |
| Bse8I | GATNNNNATC | 1 cut(s) | 447 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 2 cut(s) | 739, 851 |
| BseJI | GATNNNNATC | 1 cut(s) | 447 |
| BseMII | CTCAG | 5 cut(s) | 369, 456, 582, 744, 933 |
| BseNI | ACTGG | 6 cut(s) | 5, 68, 97, 285, 439, 931 |
| BseRI | GAGGAG | 3 cut(s) | 7, 70, 154 |
| BseSI | GKGCMC | 1 cut(s) | 1011 |
| BseXI | GCAGC | 1 cut(s) | 919 |
| BsgI | GTGCAG | 1 cut(s) | 202 |
| Bsh1236I | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| Bsh1285I | CGRYCG | 2 cut(s) | 60, 459 |
| BshFI | GGCC | 3 cut(s) | 494, 846, 1034 |
| BsiEI | CGRYCG | 2 cut(s) | 60, 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 162 |
| BsiSI | CCGG | 2 cut(s) | 575, 855 |
| BslFI | GGGAC | 2 cut(s) | 215, 1063 |
| BsmAI | GTCTC | 4 cut(s) | 19, 82, 256, 1018 |
| BsmFI | GGGAC | 2 cut(s) | 215, 1063 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| BsnI | GGCC | 3 cut(s) | 494, 846, 1034 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 1011 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| Bsp68I | TCGCGA | 3 cut(s) | 22, 85, 686 |
| BspANI | GGCC | 3 cut(s) | 494, 846, 1034 |
| BspCNI | CTCAG | 5 cut(s) | 370, 457, 583, 745, 932 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspFNI | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| BspLI | GGNNCC | 2 cut(s) | 291, 819 |
| BspMAI | CTGCAG | 1 cut(s) | 532 |
| BspMI | ACCTGC | 2 cut(s) | 623, 710 |
| BspOI | GCTAGC | 1 cut(s) | 645 |
| BspPI | GGATC | 3 cut(s) | 660, 812, 825 |
| BsrI | ACTGG | 6 cut(s) | 5, 68, 97, 285, 439, 931 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| BssMI | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 61, 267, 365, 520, 616 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 251 |
| BstBAI | YACGTR | 1 cut(s) | 871 |
| BstC8I | GCNNGC | 8 cut(s) | 24, 87, 233, 237, 496, 500, 643, 1011 |
| BstDEI | CTNAG | 6 cut(s) | 378, 465, 591, 753, 833, 919 |
| BstDSI | CCRYGG | 1 cut(s) | 224 |
| BstF5I | GGATG | 2 cut(s) | 739, 851 |
| BstFNI | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| BstH2I | RGCGCY | 2 cut(s) | 741, 933 |
| BstHHI | GCGC | 4 cut(s) | 359, 740, 932, 1046 |
| BstKTI | GATC | 5 cut(s) | 48, 597, 655, 672, 820 |
| BstMAI | GTCTC | 4 cut(s) | 19, 82, 256, 1018 |
| BstMBI | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| BstMCI | CGRYCG | 2 cut(s) | 60, 459 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 232, 251, 491, 629, 638, 735, 746, 843, 929 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSFI | CTRYAG | 2 cut(s) | 340, 528 |
| BstSLI | GKGCMC | 1 cut(s) | 1011 |
| BstUI | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| BstV1I | GCAGC | 1 cut(s) | 919 |
| BstV2I | GAAGAC | 1 cut(s) | 716 |
| BstX2I | RGATCY | 2 cut(s) | 669, 817 |
| BstYI | RGATCY | 2 cut(s) | 669, 817 |
| BsuRI | GGCC | 3 cut(s) | 494, 846, 1034 |
| BtgI | CCRYGG | 1 cut(s) | 224 |
| BtsCI | GGATG | 2 cut(s) | 739, 851 |
| BtsI | GCAGTG | 3 cut(s) | 249, 525, 537 |
| BtsIMutI | CAGTG | 7 cut(s) | 104, 249, 516, 525, 537, 662, 979 |
| BtuMI | TCGCGA | 3 cut(s) | 22, 85, 686 |
| BveI | ACCTGC | 2 cut(s) | 623, 710 |
| Cac8I | GCNNGC | 8 cut(s) | 24, 87, 233, 237, 496, 500, 643, 1011 |
| CaiI | CAGNNNCTG | 1 cut(s) | 926 |
| CfoI | GCGC | 4 cut(s) | 359, 740, 932, 1046 |
| Cfr42I | CCGCGG | 1 cut(s) | 227 |
| Csp6I | GTAC | 2 cut(s) | 612, 868 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 160, 195, 738, 773 |
| CviAII | CATG | 2 cut(s) | 236, 715 |
| CviQI | GTAC | 2 cut(s) | 612, 868 |
| DdeI | CTNAG | 6 cut(s) | 378, 465, 591, 753, 833, 919 |
| DpnI | GATC | 5 cut(s) | 47, 596, 654, 671, 819 |
| DpnII | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 997 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 997 |
| EaeI | YGGCCR | 1 cut(s) | 844 |
| Eco57I | CTGAAG | 1 cut(s) | 965 |
| FaeI | CATG | 2 cut(s) | 239, 718 |
| FaiI | YATR | 6 cut(s) | 237, 243, 327, 428, 716, 764 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 656, 688 |
| FaqI | GGGAC | 2 cut(s) | 215, 1063 |
| FatI | CATG | 2 cut(s) | 235, 714 |
| FauI | CCCGC | 2 cut(s) | 231, 1072 |
| Fnu4HI | GCNGC | 3 cut(s) | 630, 875, 933 |
| FokI | GGATG | 2 cut(s) | 746, 838 |
| Fsp4HI | GCNGC | 3 cut(s) | 630, 875, 933 |
| FspBI | CTAG | 4 cut(s) | 11, 74, 642, 746 |
| GlaI | GCGC | 4 cut(s) | 358, 739, 931, 1045 |
| GluI | GCNGC | 3 cut(s) | 630, 875, 933 |
| GsuI | CTGGAG | 1 cut(s) | 319 |
| HaeII | RGCGCY | 2 cut(s) | 741, 933 |
| HaeIII | GGCC | 3 cut(s) | 494, 846, 1034 |
| HapII | CCGG | 2 cut(s) | 575, 855 |
| HhaI | GCGC | 4 cut(s) | 359, 740, 932, 1046 |
| Hin1II | CATG | 2 cut(s) | 239, 718 |
| Hin6I | GCGC | 4 cut(s) | 357, 738, 930, 1044 |
| HinP1I | GCGC | 4 cut(s) | 357, 738, 930, 1044 |
| HincII | GTYRAC | 2 cut(s) | 432, 523 |
| HindII | GTYRAC | 2 cut(s) | 432, 523 |
| HindIII | AAGCTT | 1 cut(s) | 807 |
| HinfI | GANTC | 3 cut(s) | 399, 448, 781 |
| HpaII | CCGG | 2 cut(s) | 575, 855 |
| HphI | GGTGA | 3 cut(s) | 32, 411, 443 |
| Hpy166II | GTNNAC | 3 cut(s) | 171, 432, 523 |
| Hpy188I | TCNGA | 6 cut(s) | 379, 564, 592, 607, 712, 1060 |
| Hpy188III | TCNNGA | 5 cut(s) | 21, 84, 575, 685, 1002 |
| Hpy8I | GTNNAC | 3 cut(s) | 171, 432, 523 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 2 cut(s) | 539, 572 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 61, 267, 365, 520, 616 |
| HpyCH4IV | ACGT | 2 cut(s) | 870, 1070 |
| HpyCH4V | TGCA | 5 cut(s) | 219, 245, 272, 530, 766 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 232, 251, 491, 629, 638, 735, 746, 843, 929 |
| HpyF3I | CTNAG | 6 cut(s) | 378, 465, 591, 753, 833, 919 |
| HpySE526I | ACGT | 2 cut(s) | 870, 1070 |
| Hsp92II | CATG | 2 cut(s) | 239, 718 |
| HspAI | GCGC | 4 cut(s) | 357, 738, 930, 1044 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| KspI | CCGCGG | 1 cut(s) | 227 |
| Kzo9I | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| LmnI | GCTCC | 3 cut(s) | 289, 417, 581 |
| Lsp1109I | GCAGC | 1 cut(s) | 919 |
| LweI | GCATC | 2 cut(s) | 46, 716 |
| MaeI | CTAG | 4 cut(s) | 11, 74, 642, 746 |
| MaeII | ACGT | 2 cut(s) | 870, 1070 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 5 cut(s) | 47, 596, 654, 671, 819 |
| MboI | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| MboII | GAAGA | 7 cut(s) | 148, 194, 197, 716, 785, 906, 958 |
| MflI | RGATCY | 2 cut(s) | 669, 817 |
| MhlI | GDGCHC | 2 cut(s) | 162, 1011 |
| MlsI | TGGCCA | 1 cut(s) | 846 |
| MluCI | AATT | 1 cut(s) | 776 |
| MluNI | TGGCCA | 1 cut(s) | 846 |
| Mox20I | TGGCCA | 1 cut(s) | 846 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MscI | TGGCCA | 1 cut(s) | 846 |
| MslI | CAYNNNNRTG | 2 cut(s) | 240, 530 |
| Msp20I | TGGCCA | 1 cut(s) | 846 |
| MspA1I | CMGCKG | 3 cut(s) | 226, 943, 964 |
| MspI | CCGG | 2 cut(s) | 575, 855 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| MvnI | CGCG | 7 cut(s) | 22, 85, 226, 357, 359, 686, 888 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 232, 251, 491, 629, 638, 735, 746, 843, 929 |
| NdeII | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| NheI | GCTAGC | 1 cut(s) | 641 |
| NlaIII | CATG | 2 cut(s) | 239, 718 |
| NlaIV | GGNNCC | 2 cut(s) | 291, 819 |
| NmeAIII | GCCGAG | 1 cut(s) | 32 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NruI | TCGCGA | 3 cut(s) | 22, 85, 686 |
| NspI | RCATGY | 1 cut(s) | 239 |
| OliI | CACNNNNGTG | 1 cut(s) | 530 |
| PaeI | GCATGC | 1 cut(s) | 239 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PfeI | GAWTC | 3 cut(s) | 399, 448, 781 |
| PkrI | GCNGC | 3 cut(s) | 631, 876, 934 |
| Ppu21I | YACGTR | 1 cut(s) | 871 |
| PspN4I | GGNNCC | 2 cut(s) | 291, 819 |
| PstI | CTGCAG | 1 cut(s) | 532 |
| PstNI | CAGNNNCTG | 1 cut(s) | 926 |
| PsuI | RGATCY | 2 cut(s) | 669, 817 |
| RruI | TCGCGA | 3 cut(s) | 22, 85, 686 |
| RsaI | GTAC | 2 cut(s) | 613, 869 |
| RsaNI | GTAC | 2 cut(s) | 612, 868 |
| RseI | CAYNNNNRTG | 2 cut(s) | 240, 530 |
| SacII | CCGCGG | 1 cut(s) | 227 |
| SatI | GCNGC | 3 cut(s) | 630, 875, 933 |
| Sau3AI | GATC | 5 cut(s) | 45, 594, 652, 669, 817 |
| ScaI | AGTACT | 1 cut(s) | 613 |
| SduI | GDGCHC | 2 cut(s) | 162, 1011 |
| SfaNI | GCATC | 2 cut(s) | 46, 716 |
| SfcI | CTRYAG | 2 cut(s) | 340, 528 |
| Sfr303I | CCGCGG | 1 cut(s) | 227 |
| SgrBI | CCGCGG | 1 cut(s) | 227 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 240, 530 |
| SphI | GCATGC | 1 cut(s) | 239 |
| Sse9I | AATT | 1 cut(s) | 776 |
| SspMI | CTAG | 4 cut(s) | 11, 74, 642, 746 |
| TaaI | ACNGT | 6 cut(s) | 32, 61, 267, 365, 520, 616 |
| TaiI | ACGT | 2 cut(s) | 873, 1073 |
| TaqI | TCGA | 1 cut(s) | 1037 |
| TasI | AATT | 1 cut(s) | 776 |
| TatI | WGTACW | 1 cut(s) | 611 |
| TauI | GCSGC | 2 cut(s) | 632, 877 |
| TfiI | GAWTC | 3 cut(s) | 399, 448, 781 |
| TscAI | CASTG | 7 cut(s) | 104, 256, 523, 532, 537, 662, 979 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| TseI | GCWGC | 1 cut(s) | 932 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 1 cut(s) | 1044 |
| TspRI | CASTG | 7 cut(s) | 104, 256, 523, 532, 537, 662, 979 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XspI | CTAG | 4 cut(s) | 11, 74, 642, 746 |
| ZrmI | AGTACT | 1 cut(s) | 613 |