transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 28 |
| AccII | CGCG | 1 cut(s) | 176 |
| AciI | CCGC | 3 cut(s) | 336, 449, 675 |
| AclWI | GGATC | 4 cut(s) | 189, 202, 272, 491 |
| AcoI | YGGCCR | 3 cut(s) | 215, 458, 709 |
| AcuI | CTGAAG | 2 cut(s) | 150, 755 |
| AfaI | GTAC | 1 cut(s) | 702 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 240, 568, 579, 780 |
| AgsI | TTSAA | 2 cut(s) | 263, 317 |
| AjnI | CCWGG | 2 cut(s) | 561, 779 |
| AleI | CACNNNNGTG | 1 cut(s) | 211 |
| AluBI | AGCT | 4 cut(s) | 11, 70, 139, 793 |
| AluI | AGCT | 4 cut(s) | 11, 70, 139, 793 |
| Alw21I | GWGCWC | 1 cut(s) | 273 |
| Alw44I | GTGCAC | 1 cut(s) | 269 |
| AlwI | GGATC | 4 cut(s) | 189, 202, 272, 491 |
| Ama87I | CYCGRG | 1 cut(s) | 652 |
| AoxI | GGCC | 7 cut(s) | 215, 242, 458, 554, 570, 581, 709 |
| ApaI | GGGCCC | 1 cut(s) | 585 |
| ApaLI | GTGCAC | 1 cut(s) | 269 |
| ApeKI | GCWGC | 4 cut(s) | 338, 356, 542, 677 |
| AspA2I | CCTAGG | 2 cut(s) | 209, 617 |
| AspS9I | GGNCC | 3 cut(s) | 22, 581, 582 |
| AsuHPI | GGTGA | 3 cut(s) | 325, 473, 769 |
| AvaI | CYCGRG | 1 cut(s) | 652 |
| AvaII | GGWCC | 1 cut(s) | 22 |
| AvrII | CCTAGG | 2 cut(s) | 209, 617 |
| BaeGI | GKGCMC | 3 cut(s) | 79, 273, 585 |
| BalI | TGGCCA | 3 cut(s) | 217, 460, 711 |
| BamHI | GGATCC | 1 cut(s) | 194 |
| BanII | GRGCYC | 1 cut(s) | 585 |
| Bbv12I | GWGCWC | 1 cut(s) | 273 |
| BbvI | GCAGC | 4 cut(s) | 350, 368, 529, 689 |
| BceAI | ACGGC | 1 cut(s) | 47 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 142, 176 |
| BciT130I | CCWGG | 2 cut(s) | 563, 781 |
| BclI | TGATCA | 2 cut(s) | 237, 534 |
| BfaI | CTAG | 3 cut(s) | 71, 210, 618 |
| BisI | GCNGC | 5 cut(s) | 339, 357, 543, 675, 678 |
| BlnI | CCTAGG | 2 cut(s) | 209, 617 |
| BlsI | GCNGC | 5 cut(s) | 340, 358, 544, 676, 679 |
| Bme1390I | CCNGG | 2 cut(s) | 563, 781 |
| Bme18I | GGWCC | 1 cut(s) | 22 |
| BmeT110I | CYCGRG | 1 cut(s) | 652 |
| BmgT120I | GGNCC | 3 cut(s) | 22, 581, 582 |
| BmiI | GGNNCC | 2 cut(s) | 196, 583 |
| BmrFI | CCNGG | 2 cut(s) | 563, 781 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaAI | YACGTR | 1 cut(s) | 268 |
| BsaJI | CCNNGG | 4 cut(s) | 209, 403, 577, 617 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 648, 678 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 240, 568, 579, 780 |
| Bse1I | ACTGG | 1 cut(s) | 461 |
| Bse3DI | GCAATG | 1 cut(s) | 537 |
| BseBI | CCWGG | 2 cut(s) | 563, 781 |
| BseDI | CCNNGG | 4 cut(s) | 209, 403, 577, 617 |
| BseGI | GGATG | 2 cut(s) | 106, 571 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 240, 568, 579, 780 |
| BseMI | GCAATG | 1 cut(s) | 537 |
| BseNI | ACTGG | 1 cut(s) | 461 |
| BseRI | GAGGAG | 1 cut(s) | 533 |
| BseSI | GKGCMC | 3 cut(s) | 79, 273, 585 |
| BseXI | GCAGC | 4 cut(s) | 350, 368, 529, 689 |
| Bsh1236I | CGCG | 1 cut(s) | 176 |
| Bsh1285I | CGRYCG | 1 cut(s) | 310 |
| BshFI | GGCC | 7 cut(s) | 217, 244, 460, 556, 572, 583, 711 |
| BsiEI | CGRYCG | 1 cut(s) | 310 |
| BsiHKAI | GWGCWC | 1 cut(s) | 273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 652 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 240, 568, 579, 780 |
| BsnI | GGCC | 7 cut(s) | 217, 244, 460, 556, 572, 583, 711 |
| BsoBI | CYCGRG | 1 cut(s) | 652 |
| Bsp120I | GGGCCC | 1 cut(s) | 581 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 273, 585 |
| Bsp143I | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| Bsp19I | CCATGG | 1 cut(s) | 403 |
| Bsp68I | TCGCGA | 1 cut(s) | 176 |
| BspACI | CCGC | 3 cut(s) | 336, 449, 675 |
| BspANI | GGCC | 7 cut(s) | 217, 244, 460, 556, 572, 583, 711 |
| BspFNI | CGCG | 1 cut(s) | 176 |
| BspLI | GGNNCC | 2 cut(s) | 196, 583 |
| BspPI | GGATC | 4 cut(s) | 189, 202, 272, 491 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BsrDI | GCAATG | 1 cut(s) | 537 |
| BsrI | ACTGG | 1 cut(s) | 461 |
| BssECI | CCNNGG | 4 cut(s) | 209, 403, 577, 617 |
| BssMI | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| BssT1I | CCWWGG | 3 cut(s) | 209, 403, 617 |
| Bst2UI | CCWGG | 2 cut(s) | 563, 781 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 705 |
| Bst6I | CTCTTC | 2 cut(s) | 129, 495 |
| BstBAI | YACGTR | 1 cut(s) | 268 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 292 |
| BstDEI | CTNAG | 1 cut(s) | 789 |
| BstDSI | CCRYGG | 2 cut(s) | 403, 577 |
| BstEII | GGTNACC | 1 cut(s) | 331 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 238, 566 |
| BstF5I | GGATG | 2 cut(s) | 106, 571 |
| BstFNI | CGCG | 1 cut(s) | 176 |
| BstKTI | GATC | 6 cut(s) | 197, 240, 280, 456, 499, 537 |
| BstMBI | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| BstMCI | CGRYCG | 1 cut(s) | 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 457 |
| BstNI | CCWGG | 2 cut(s) | 563, 781 |
| BstPI | GGTNACC | 1 cut(s) | 331 |
| BstSCI | CCNGG | 2 cut(s) | 561, 779 |
| BstSLI | GKGCMC | 3 cut(s) | 79, 273, 585 |
| BstUI | CGCG | 1 cut(s) | 176 |
| BstV1I | GCAGC | 4 cut(s) | 350, 368, 529, 689 |
| BstX2I | RGATCY | 1 cut(s) | 194 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 194 |
| BsuRI | GGCC | 7 cut(s) | 217, 244, 460, 556, 572, 583, 711 |
| BtgI | CCRYGG | 2 cut(s) | 403, 577 |
| BtgZI | GCGATG | 2 cut(s) | 145, 187 |
| BtsCI | GGATG | 2 cut(s) | 106, 571 |
| BtsI | GCAGTG | 1 cut(s) | 366 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 710 |
| BtuMI | TCGCGA | 1 cut(s) | 176 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 292 |
| Cfr13I | GGNCC | 3 cut(s) | 22, 581, 582 |
| CsiI | ACCWGGT | 1 cut(s) | 779 |
| Csp6I | GTAC | 1 cut(s) | 701 |
| CviAII | CATG | 4 cut(s) | 106, 219, 404, 431 |
| CviQI | GTAC | 1 cut(s) | 701 |
| DdeI | CTNAG | 1 cut(s) | 789 |
| DpnI | GATC | 6 cut(s) | 196, 239, 279, 455, 498, 536 |
| DpnII | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| EaeI | YGGCCR | 3 cut(s) | 215, 458, 709 |
| Eam1104I | CTCTTC | 2 cut(s) | 129, 495 |
| EarI | CTCTTC | 2 cut(s) | 129, 495 |
| Eco130I | CCWWGG | 3 cut(s) | 209, 403, 617 |
| Eco147I | AGGCCT | 2 cut(s) | 556, 572 |
| Eco24I | GRGCYC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 2 cut(s) | 150, 755 |
| Eco88I | CYCGRG | 1 cut(s) | 652 |
| Eco91I | GGTNACC | 1 cut(s) | 331 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 238, 566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 582 |
| EcoO65I | GGTNACC | 1 cut(s) | 331 |
| EcoRII | CCWGG | 2 cut(s) | 561, 779 |
| EcoT14I | CCWWGG | 3 cut(s) | 209, 403, 617 |
| EcoT38I | GRGCYC | 1 cut(s) | 585 |
| ErhI | CCWWGG | 3 cut(s) | 209, 403, 617 |
| FaeI | CATG | 4 cut(s) | 109, 222, 407, 434 |
| FatI | CATG | 4 cut(s) | 105, 218, 403, 430 |
| FbaI | TGATCA | 2 cut(s) | 237, 534 |
| FblI | GTMKAC | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 5 cut(s) | 339, 357, 543, 675, 678 |
| FokI | GGATG | 2 cut(s) | 113, 578 |
| FriOI | GRGCYC | 1 cut(s) | 585 |
| Fsp4HI | GCNGC | 5 cut(s) | 339, 357, 543, 675, 678 |
| FspBI | CTAG | 3 cut(s) | 71, 210, 618 |
| GluI | GCNGC | 5 cut(s) | 339, 357, 543, 675, 678 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeIII | GGCC | 7 cut(s) | 217, 244, 460, 556, 572, 583, 711 |
| Hin1II | CATG | 4 cut(s) | 109, 222, 407, 434 |
| HincII | GTYRAC | 2 cut(s) | 29, 384 |
| HindII | GTYRAC | 2 cut(s) | 29, 384 |
| HindIII | AAGCTT | 1 cut(s) | 9 |
| HinfI | GANTC | 1 cut(s) | 181 |
| HphI | GGTGA | 3 cut(s) | 325, 473, 769 |
| Hpy166II | GTNNAC | 6 cut(s) | 29, 45, 271, 384, 481, 786 |
| Hpy188I | TCNGA | 2 cut(s) | 169, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 175, 494, 654 |
| Hpy8I | GTNNAC | 6 cut(s) | 29, 45, 271, 384, 481, 786 |
| Hpy99I | CGWCG | 4 cut(s) | 30, 33, 181, 257 |
| HpyAV | CCTTC | 5 cut(s) | 185, 219, 322, 595, 784 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 705 |
| HpyCH4IV | ACGT | 3 cut(s) | 267, 380, 638 |
| HpyCH4V | TGCA | 4 cut(s) | 121, 149, 222, 271 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 457 |
| HpyF3I | CTNAG | 1 cut(s) | 789 |
| HpySE526I | ACGT | 3 cut(s) | 267, 380, 638 |
| Hsp92II | CATG | 4 cut(s) | 109, 222, 407, 434 |
| Ksp22I | TGATCA | 2 cut(s) | 237, 534 |
| Kzo9I | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| Lsp1109I | GCAGC | 4 cut(s) | 350, 368, 529, 689 |
| MabI | ACCWGGT | 1 cut(s) | 779 |
| MaeI | CTAG | 3 cut(s) | 71, 210, 618 |
| MaeII | ACGT | 3 cut(s) | 267, 380, 638 |
| MaeIII | GTNAC | 2 cut(s) | 331, 740 |
| MalI | GATC | 6 cut(s) | 196, 239, 279, 455, 498, 536 |
| MboI | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| MboII | GAAGA | 4 cut(s) | 136, 146, 482, 739 |
| MfeI | CAATTG | 1 cut(s) | 95 |
| MflI | RGATCY | 1 cut(s) | 194 |
| MhlI | GDGCHC | 3 cut(s) | 79, 273, 585 |
| MlsI | TGGCCA | 3 cut(s) | 217, 460, 711 |
| MluCI | AATT | 1 cut(s) | 95 |
| MluNI | TGGCCA | 3 cut(s) | 217, 460, 711 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MnlI | CCTC | 9 cut(s) | 13, 54, 294, 401, 498, 511, 514, 546, 562 |
| Mox20I | TGGCCA | 3 cut(s) | 217, 460, 711 |
| MscI | TGGCCA | 3 cut(s) | 217, 460, 711 |
| MseI | TTAA | 2 cut(s) | 57, 426 |
| MslI | CAYNNNNRTG | 2 cut(s) | 211, 408 |
| Msp20I | TGGCCA | 3 cut(s) | 217, 460, 711 |
| MspA1I | CMGCKG | 1 cut(s) | 451 |
| MspR9I | CCNGG | 2 cut(s) | 563, 781 |
| MunI | CAATTG | 1 cut(s) | 95 |
| MvaI | CCWGG | 2 cut(s) | 563, 781 |
| MvnI | CGCG | 1 cut(s) | 176 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 457 |
| NcoI | CCATGG | 1 cut(s) | 403 |
| NdeII | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| NlaIII | CATG | 4 cut(s) | 109, 222, 407, 434 |
| NlaIV | GGNNCC | 2 cut(s) | 196, 583 |
| NmuCI | GTSAC | 1 cut(s) | 331 |
| NruI | TCGCGA | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 211 |
| PceI | AGGCCT | 2 cut(s) | 556, 572 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 273 |
| PfeI | GAWTC | 1 cut(s) | 181 |
| PkrI | GCNGC | 5 cut(s) | 340, 358, 544, 676, 679 |
| Ppu21I | YACGTR | 1 cut(s) | 268 |
| Psp6I | CCWGG | 2 cut(s) | 561, 779 |
| PspEI | GGTNACC | 1 cut(s) | 331 |
| PspGI | CCWGG | 2 cut(s) | 561, 779 |
| PspN4I | GGNNCC | 2 cut(s) | 196, 583 |
| PspOMI | GGGCCC | 1 cut(s) | 581 |
| PspPI | GGNCC | 3 cut(s) | 22, 581, 582 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 707, 739 |
| PsuI | RGATCY | 1 cut(s) | 194 |
| RruI | TCGCGA | 1 cut(s) | 176 |
| RsaI | GTAC | 1 cut(s) | 702 |
| RsaNI | GTAC | 1 cut(s) | 701 |
| RseI | CAYNNNNRTG | 2 cut(s) | 211, 408 |
| SalI | GTCGAC | 1 cut(s) | 27 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SaqAI | TTAA | 2 cut(s) | 57, 426 |
| SatI | GCNGC | 5 cut(s) | 339, 357, 543, 675, 678 |
| Sau3AI | GATC | 6 cut(s) | 194, 237, 277, 453, 496, 534 |
| Sau96I | GGNCC | 3 cut(s) | 22, 581, 582 |
| ScrFI | CCNGG | 2 cut(s) | 563, 781 |
| SduI | GDGCHC | 3 cut(s) | 79, 273, 585 |
| SexAI | ACCWGGT | 1 cut(s) | 779 |
| SgrDI | CGTCGACG | 1 cut(s) | 27 |
| SinI | GGWCC | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 211, 408 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 1 cut(s) | 95 |
| SseBI | AGGCCT | 2 cut(s) | 556, 572 |
| SsiI | CCGC | 3 cut(s) | 336, 449, 675 |
| SspMI | CTAG | 3 cut(s) | 71, 210, 618 |
| StuI | AGGCCT | 2 cut(s) | 556, 572 |
| StyD4I | CCNGG | 2 cut(s) | 561, 779 |
| StyI | CCWWGG | 3 cut(s) | 209, 403, 617 |
| TaaI | ACNGT | 2 cut(s) | 26, 705 |
| TaiI | ACGT | 3 cut(s) | 270, 383, 641 |
| TaqI | TCGA | 4 cut(s) | 28, 306, 666, 697 |
| TaqII | GACCGA | 1 cut(s) | 324 |
| TasI | AATT | 1 cut(s) | 95 |
| TatI | WGTACW | 1 cut(s) | 700 |
| TauI | GCSGC | 1 cut(s) | 677 |
| TfiI | GAWTC | 1 cut(s) | 181 |
| Tru1I | TTAA | 2 cut(s) | 57, 426 |
| Tru9I | TTAA | 2 cut(s) | 57, 426 |
| TscAI | CASTG | 2 cut(s) | 366, 710 |
| TseFI | GTSAC | 1 cut(s) | 331 |
| TseI | GCWGC | 4 cut(s) | 338, 356, 542, 677 |
| Tsp45I | GTSAC | 1 cut(s) | 331 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspGWI | ACGGA | 1 cut(s) | 270 |
| TspRI | CASTG | 2 cut(s) | 366, 710 |
| VneI | GTGCAC | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 22 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 238, 566 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 453, 507 |
| XmaJI | CCTAGG | 2 cut(s) | 209, 617 |
| XmiI | GTMKAC | 1 cut(s) | 28 |
| XspI | CTAG | 3 cut(s) | 71, 210, 618 |