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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 109, 473 |
| AciI | CCGC | 5 cut(s) | 92, 146, 173, 269, 369 |
| AcsI | RAATTY | 3 cut(s) | 117, 417, 467 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 217 |
| AgsI | TTSAA | 1 cut(s) | 467 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 452, 484 |
| AleI | CACNNNNGTG | 1 cut(s) | 318 |
| AluBI | AGCT | 3 cut(s) | 279, 439, 463 |
| AluI | AGCT | 3 cut(s) | 279, 439, 463 |
| Ama87I | CYCGRG | 1 cut(s) | 274 |
| AoxI | GGCC | 5 cut(s) | 30, 72, 126, 270, 450 |
| ApoI | RAATTY | 3 cut(s) | 117, 417, 467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AspLEI | GCGC | 1 cut(s) | 111 |
| AspS9I | GGNCC | 3 cut(s) | 30, 73, 271 |
| AsuC2I | CCSGG | 1 cut(s) | 385 |
| AsuHPI | GGTGA | 2 cut(s) | 332, 448 |
| AvaI | CYCGRG | 1 cut(s) | 274 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 229, 262 |
| BccI | CCATC | 2 cut(s) | 64, 442 |
| BceAI | ACGGC | 1 cut(s) | 79 |
| BcnI | CCSGG | 1 cut(s) | 385 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 497 |
| BisI | GCNGC | 2 cut(s) | 270, 369 |
| BlsI | GCNGC | 2 cut(s) | 271, 370 |
| Bme1390I | CCNGG | 1 cut(s) | 385 |
| BmeT110I | CYCGRG | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 3 cut(s) | 30, 73, 271 |
| BmiI | GGNNCC | 3 cut(s) | 31, 189, 273 |
| BmrFI | CCNGG | 1 cut(s) | 385 |
| BmsI | GCATC | 2 cut(s) | 265, 478 |
| BpuMI | CCSGG | 1 cut(s) | 385 |
| Bsa29I | ATCGAT | 1 cut(s) | 446 |
| BsaBI | GATNNNNATC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 4 cut(s) | 95, 232, 316, 423 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 217 |
| Bse118I | RCCGGY | 1 cut(s) | 169 |
| Bse8I | GATNNNNATC | 1 cut(s) | 362 |
| BseCI | ATCGAT | 1 cut(s) | 446 |
| BseDI | CCNNGG | 4 cut(s) | 95, 232, 316, 423 |
| BseGI | GGATG | 4 cut(s) | 75, 141, 343, 519 |
| BseJI | GATNNNNATC | 1 cut(s) | 362 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 217 |
| BseRI | GAGGAG | 3 cut(s) | 362, 365, 368 |
| Bsh1236I | CGCG | 2 cut(s) | 109, 473 |
| Bsh1285I | CGRYCG | 1 cut(s) | 384 |
| BshFI | GGCC | 5 cut(s) | 32, 74, 128, 272, 452 |
| BshVI | ATCGAT | 1 cut(s) | 446 |
| BsiEI | CGRYCG | 1 cut(s) | 384 |
| BsiHKCI | CYCGRG | 1 cut(s) | 274 |
| BsiSI | CCGG | 3 cut(s) | 41, 170, 384 |
| BslFI | GGGAC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 217 |
| BsmFI | GGGAC | 1 cut(s) | 251 |
| BsmI | GAATGC | 1 cut(s) | 230 |
| BsnI | GGCC | 5 cut(s) | 32, 74, 128, 272, 452 |
| BsoBI | CYCGRG | 1 cut(s) | 274 |
| Bsp68I | TCGCGA | 1 cut(s) | 473 |
| BspACI | CCGC | 5 cut(s) | 92, 146, 173, 269, 369 |
| BspANI | GGCC | 5 cut(s) | 32, 74, 128, 272, 452 |
| BspDI | ATCGAT | 1 cut(s) | 446 |
| BspFNI | CGCG | 2 cut(s) | 109, 473 |
| BspLI | GGNNCC | 3 cut(s) | 31, 189, 273 |
| BsrFI | RCCGGY | 1 cut(s) | 169 |
| BssAI | RCCGGY | 1 cut(s) | 169 |
| BssECI | CCNNGG | 4 cut(s) | 95, 232, 316, 423 |
| BssT1I | CCWWGG | 2 cut(s) | 232, 423 |
| Bst4CI | ACNGT | 3 cut(s) | 265, 302, 320 |
| BstC8I | GCNNGC | 1 cut(s) | 171 |
| BstDSI | CCRYGG | 2 cut(s) | 95, 316 |
| BstF5I | GGATG | 4 cut(s) | 75, 141, 343, 519 |
| BstFNI | CGCG | 2 cut(s) | 109, 473 |
| BstHHI | GCGC | 1 cut(s) | 111 |
| BstMCI | CGRYCG | 1 cut(s) | 384 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 106, 497 |
| BstSCI | CCNGG | 1 cut(s) | 383 |
| BstUI | CGCG | 2 cut(s) | 109, 473 |
| Bsu15I | ATCGAT | 1 cut(s) | 446 |
| BsuRI | GGCC | 5 cut(s) | 32, 74, 128, 272, 452 |
| BsuTUI | ATCGAT | 1 cut(s) | 446 |
| BtgI | CCRYGG | 2 cut(s) | 95, 316 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 4 cut(s) | 75, 141, 343, 519 |
| BtuMI | TCGCGA | 1 cut(s) | 473 |
| Cac8I | GCNNGC | 1 cut(s) | 171 |
| CfoI | GCGC | 1 cut(s) | 111 |
| Cfr10I | RCCGGY | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 3 cut(s) | 30, 73, 271 |
| ClaI | ATCGAT | 1 cut(s) | 446 |
| CseI | GACGC | 2 cut(s) | 217, 222 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviQI | GTAC | 1 cut(s) | 246 |
| EciI | GGCGGA | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 2 cut(s) | 232, 423 |
| Eco32I | GATATC | 1 cut(s) | 364 |
| Eco88I | CYCGRG | 1 cut(s) | 274 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoRV | GATATC | 1 cut(s) | 364 |
| EcoT14I | CCWWGG | 2 cut(s) | 232, 423 |
| ErhI | CCWWGG | 2 cut(s) | 232, 423 |
| FaeI | CATG | 1 cut(s) | 506 |
| FaiI | YATR | 8 cut(s) | 242, 244, 297, 478, 480, 484, 486, 504 |
| FaqI | GGGAC | 1 cut(s) | 251 |
| FatI | CATG | 1 cut(s) | 502 |
| FauI | CCCGC | 1 cut(s) | 153 |
| FauNDI | CATATG | 2 cut(s) | 242, 484 |
| Fnu4HI | GCNGC | 2 cut(s) | 270, 369 |
| FokI | GGATG | 3 cut(s) | 82, 128, 350 |
| Fsp4HI | GCNGC | 2 cut(s) | 270, 369 |
| GlaI | GCGC | 1 cut(s) | 110 |
| GluI | GCNGC | 2 cut(s) | 270, 369 |
| HaeIII | GGCC | 5 cut(s) | 32, 74, 128, 272, 452 |
| HapII | CCGG | 3 cut(s) | 41, 170, 384 |
| HgaI | GACGC | 2 cut(s) | 217, 222 |
| HhaI | GCGC | 1 cut(s) | 111 |
| Hin1II | CATG | 1 cut(s) | 506 |
| Hin6I | GCGC | 1 cut(s) | 109 |
| HinP1I | GCGC | 1 cut(s) | 109 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 2 cut(s) | 88, 508 |
| HpaII | CCGG | 3 cut(s) | 41, 170, 384 |
| HphI | GGTGA | 2 cut(s) | 332, 448 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 69, 123, 513 |
| Hpy188III | TCNNGA | 2 cut(s) | 335, 472 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| Hpy99I | CGWCG | 2 cut(s) | 201, 216 |
| HpyAV | CCTTC | 2 cut(s) | 118, 463 |
| HpyCH4III | ACNGT | 3 cut(s) | 265, 302, 320 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 106, 497 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| HspAI | GCGC | 1 cut(s) | 109 |
| KroI | GCCGGC | 1 cut(s) | 169 |
| KroNI | GCCGGC | 1 cut(s) | 171 |
| LpnPI | CCDG | 5 cut(s) | 54, 183, 262, 397, 411 |
| LweI | GCATC | 2 cut(s) | 265, 478 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MboII | GAAGA | 4 cut(s) | 96, 233, 335, 353 |
| MluCI | AATT | 4 cut(s) | 117, 410, 417, 467 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MnlI | CCTC | 6 cut(s) | 37, 201, 340, 343, 346, 381 |
| MroNI | GCCGGC | 1 cut(s) | 169 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MseI | TTAA | 1 cut(s) | 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 318 |
| MspI | CCGG | 3 cut(s) | 41, 170, 384 |
| MspR9I | CCNGG | 1 cut(s) | 385 |
| Mva1269I | GAATGC | 1 cut(s) | 230 |
| MvnI | CGCG | 2 cut(s) | 109, 473 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 106, 497 |
| NaeI | GCCGGC | 1 cut(s) | 171 |
| NciI | CCSGG | 1 cut(s) | 385 |
| NdeI | CATATG | 2 cut(s) | 242, 484 |
| NgoMIV | GCCGGC | 1 cut(s) | 169 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 189, 273 |
| NruI | TCGCGA | 1 cut(s) | 473 |
| OliI | CACNNNNGTG | 1 cut(s) | 318 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 372 |
| PctI | GAATGC | 1 cut(s) | 230 |
| PdiI | GCCGGC | 1 cut(s) | 171 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 1 cut(s) | 508 |
| PkrI | GCNGC | 2 cut(s) | 271, 370 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 189, 273 |
| PspPI | GGNCC | 3 cut(s) | 30, 73, 271 |
| RruI | TCGCGA | 1 cut(s) | 473 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| RseI | CAYNNNNRTG | 1 cut(s) | 318 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| SatI | GCNGC | 2 cut(s) | 270, 369 |
| Sau96I | GGNCC | 3 cut(s) | 30, 73, 271 |
| SchI | GAGTC | 1 cut(s) | 97 |
| ScrFI | CCNGG | 1 cut(s) | 385 |
| SetI | ASST | 7 cut(s) | 26, 48, 141, 193, 281, 441, 465 |
| SfaNI | GCATC | 2 cut(s) | 265, 478 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 318 |
| Sse9I | AATT | 4 cut(s) | 117, 410, 417, 467 |
| SsiI | CCGC | 5 cut(s) | 92, 146, 173, 269, 369 |
| StyD4I | CCNGG | 1 cut(s) | 383 |
| StyI | CCWWGG | 2 cut(s) | 232, 423 |
| TaaI | ACNGT | 3 cut(s) | 265, 302, 320 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TaqI | TCGA | 1 cut(s) | 446 |
| TasI | AATT | 4 cut(s) | 117, 410, 417, 467 |
| TauI | GCSGC | 2 cut(s) | 272, 371 |
| TfiI | GAWTC | 1 cut(s) | 508 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| XapI | RAATTY | 3 cut(s) | 117, 417, 467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |