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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 346 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 4 cut(s) | 84, 108, 216, 237 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 35, 165, 346 |
| AgsI | TTSAA | 1 cut(s) | 194 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 36 |
| AluBI | AGCT | 1 cut(s) | 253 |
| AluI | AGCT | 1 cut(s) | 253 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AoxI | GGCC | 2 cut(s) | 60, 336 |
| ApaI | GGGCCC | 1 cut(s) | 340 |
| AseI | ATTAAT | 1 cut(s) | 54 |
| AspLEI | GCGC | 1 cut(s) | 276 |
| AspS9I | GGNCC | 2 cut(s) | 336, 337 |
| AsuHPI | GGTGA | 1 cut(s) | 17 |
| AsuII | TTCGAA | 1 cut(s) | 225 |
| AsuNHI | GCTAGC | 1 cut(s) | 356 |
| BaeGI | GKGCMC | 1 cut(s) | 340 |
| BanII | GRGCYC | 1 cut(s) | 340 |
| BccI | CCATC | 1 cut(s) | 140 |
| BciVI | GTATCC | 1 cut(s) | 289 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 2 cut(s) | 266, 357 |
| BfuI | GTATCC | 1 cut(s) | 289 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 2 cut(s) | 336, 337 |
| BmiI | GGNNCC | 1 cut(s) | 338 |
| BmtI | GCTAGC | 1 cut(s) | 360 |
| Bpu14I | TTCGAA | 1 cut(s) | 225 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaI | GGTCTC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 1 cut(s) | 159 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 35, 165, 346 |
| BseDI | CCNNGG | 1 cut(s) | 159 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 35, 165, 346 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BseSI | GKGCMC | 1 cut(s) | 340 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 2 cut(s) | 62, 338 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 35, 165, 346 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmI | GAATGC | 1 cut(s) | 331 |
| BsnI | GGCC | 2 cut(s) | 62, 338 |
| Bso31I | GGTCTC | 1 cut(s) | 227 |
| Bsp119I | TTCGAA | 1 cut(s) | 225 |
| Bsp120I | GGGCCC | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 340 |
| Bsp143I | GATC | 2 cut(s) | 247, 309 |
| BspACI | CCGC | 4 cut(s) | 84, 108, 216, 237 |
| BspANI | GGCC | 2 cut(s) | 62, 338 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspHI | TCATGA | 1 cut(s) | 399 |
| BspLI | GGNNCC | 1 cut(s) | 338 |
| BspOI | GCTAGC | 1 cut(s) | 360 |
| BspT104I | TTCGAA | 1 cut(s) | 225 |
| BspTNI | GGTCTC | 1 cut(s) | 227 |
| BssECI | CCNNGG | 1 cut(s) | 159 |
| BssMI | GATC | 2 cut(s) | 247, 309 |
| Bst4CI | ACNGT | 1 cut(s) | 100 |
| Bst6I | CTCTTC | 1 cut(s) | 12 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstBI | TTCGAA | 1 cut(s) | 225 |
| BstC8I | GCNNGC | 4 cut(s) | 64, 68, 358, 362 |
| BstDEI | CTNAG | 2 cut(s) | 33, 411 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 1 cut(s) | 276 |
| BstKTI | GATC | 2 cut(s) | 250, 312 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 2 cut(s) | 247, 309 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 335 |
| BstNSI | RCATGY | 1 cut(s) | 290 |
| BstSLI | GKGCMC | 1 cut(s) | 340 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 100 |
| BsuI | GTATCC | 1 cut(s) | 289 |
| BsuRI | GGCC | 2 cut(s) | 62, 338 |
| BtgZI | GCGATG | 1 cut(s) | 185 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 377 |
| Cac8I | GCNNGC | 4 cut(s) | 64, 68, 358, 362 |
| CciI | TCATGA | 1 cut(s) | 399 |
| CfoI | GCGC | 1 cut(s) | 276 |
| Cfr13I | GGNCC | 2 cut(s) | 336, 337 |
| CviAII | CATG | 5 cut(s) | 181, 287, 341, 388, 400 |
| CviJI | RGCY | 8 cut(s) | 62, 70, 122, 136, 215, 253, 338, 395 |
| CviKI_1 | RGCY | 8 cut(s) | 62, 70, 122, 136, 215, 253, 338, 395 |
| DdeI | CTNAG | 2 cut(s) | 33, 411 |
| DpnI | GATC | 2 cut(s) | 249, 311 |
| DpnII | GATC | 2 cut(s) | 247, 309 |
| DriI | GACNNNNNGTC | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 1 cut(s) | 12 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 36 |
| EarI | CTCTTC | 1 cut(s) | 12 |
| Eco24I | GRGCYC | 1 cut(s) | 340 |
| Eco31I | GGTCTC | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 336 |
| EcoT38I | GRGCYC | 1 cut(s) | 340 |
| FaeI | CATG | 5 cut(s) | 184, 290, 344, 391, 403 |
| FaiI | YATR | 6 cut(s) | 182, 257, 288, 342, 389, 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 106, 138 |
| FatI | CATG | 5 cut(s) | 180, 286, 340, 387, 399 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FriOI | GRGCYC | 1 cut(s) | 340 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 2 cut(s) | 266, 357 |
| GlaI | GCGC | 1 cut(s) | 275 |
| GluI | GCNGC | 1 cut(s) | 216 |
| HaeIII | GGCC | 2 cut(s) | 62, 338 |
| HhaI | GCGC | 1 cut(s) | 276 |
| Hin1II | CATG | 5 cut(s) | 184, 290, 344, 391, 403 |
| Hin6I | GCGC | 1 cut(s) | 274 |
| HinP1I | GCGC | 1 cut(s) | 274 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 2 cut(s) | 22, 367 |
| HphI | GGTGA | 1 cut(s) | 17 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 263 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 160, 322 |
| Hpy188III | TCNNGA | 2 cut(s) | 143, 400 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 263 |
| HpyCH4III | ACNGT | 1 cut(s) | 100 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 2 cut(s) | 290, 329 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 335 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 411 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 5 cut(s) | 184, 290, 344, 391, 403 |
| HspAI | GCGC | 1 cut(s) | 274 |
| Kzo9I | GATC | 2 cut(s) | 247, 309 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LpnPI | CCDG | 6 cut(s) | 44, 76, 84, 156, 284, 389 |
| MaeI | CTAG | 2 cut(s) | 266, 357 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MaeIII | GTNAC | 1 cut(s) | 46 |
| MalI | GATC | 2 cut(s) | 249, 311 |
| MboI | GATC | 2 cut(s) | 247, 309 |
| MboII | GAAGA | 2 cut(s) | 29, 253 |
| MhlI | GDGCHC | 1 cut(s) | 340 |
| MnlI | CCTC | 6 cut(s) | 28, 112, 154, 166, 286, 385 |
| MseI | TTAA | 1 cut(s) | 54 |
| MspA1I | CMGCKG | 1 cut(s) | 218 |
| Mva1269I | GAATGC | 1 cut(s) | 331 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 335 |
| NdeII | GATC | 2 cut(s) | 247, 309 |
| NheI | GCTAGC | 1 cut(s) | 356 |
| NlaIII | CATG | 5 cut(s) | 184, 290, 344, 391, 403 |
| NlaIV | GGNNCC | 1 cut(s) | 338 |
| NmuCI | GTSAC | 1 cut(s) | 46 |
| NspI | RCATGY | 1 cut(s) | 290 |
| NspV | TTCGAA | 1 cut(s) | 225 |
| PagI | TCATGA | 1 cut(s) | 399 |
| PctI | GAATGC | 1 cut(s) | 331 |
| PfeI | GAWTC | 2 cut(s) | 22, 367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 346 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PshBI | ATTAAT | 1 cut(s) | 54 |
| PspN4I | GGNNCC | 1 cut(s) | 338 |
| PspOMI | GGGCCC | 1 cut(s) | 336 |
| PspPI | GGNCC | 2 cut(s) | 336, 337 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 54 |
| SatI | GCNGC | 1 cut(s) | 216 |
| Sau3AI | GATC | 2 cut(s) | 247, 309 |
| Sau96I | GGNCC | 2 cut(s) | 336, 337 |
| SduI | GDGCHC | 1 cut(s) | 340 |
| SetI | ASST | 5 cut(s) | 158, 165, 170, 255, 262 |
| SfuI | TTCGAA | 1 cut(s) | 225 |
| SsiI | CCGC | 4 cut(s) | 84, 108, 216, 237 |
| SspMI | CTAG | 2 cut(s) | 266, 357 |
| TaaI | ACNGT | 1 cut(s) | 100 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TaqI | TCGA | 2 cut(s) | 5, 225 |
| TauI | GCSGC | 1 cut(s) | 218 |
| TfiI | GAWTC | 2 cut(s) | 22, 367 |
| Tru1I | TTAA | 1 cut(s) | 54 |
| Tru9I | TTAA | 1 cut(s) | 54 |
| TscAI | CASTG | 2 cut(s) | 105, 377 |
| TseFI | GTSAC | 1 cut(s) | 46 |
| Tsp45I | GTSAC | 1 cut(s) | 46 |
| TspDTI | ATGAA | 1 cut(s) | 416 |
| TspRI | CASTG | 2 cut(s) | 105, 377 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 346 |
| VspI | ATTAAT | 1 cut(s) | 54 |
| XceI | RCATGY | 1 cut(s) | 290 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XspI | CTAG | 2 cut(s) | 266, 357 |